Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015170

Physical Location & Seq

Genomic Coordinates Reverse (-)

17869515 .. 17872032

Gene Structure 2518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1866 bp

ATGTACAGATCAATGGCAATCCTGTCTTCTCTTCGACACGCGTACTCACAGATCTCTACTCGATCGTATCTAAGCCGATCTAAGGTGGGTTTTTCCTCAAACTTGTCTTCGCCTCTCGATTCATTTGCAATCGTCCCTAGTCGATTTCTTTGGAAATTTCGAACCTTTTCTTCGAAACCAGATTCTATGCTTCAATTAGTGCTTGAGAATGATTGGTCTAAGGAAGTAGAGGAAGGATTGAGGAAACCTGATATGTCTTTGACACACGAGACTGCAATTTACGTTCTGAGGAAATTGGAGAAGTATCCTGAAAAAGCTTATTACTTTCTCGATTGGGTTTTGAGAGATTCAGGGCTTAGTCCAAGTACTCCACTCTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCAATGAAACGGTTTTGGATGACTCTGAGGGAGATGAAACAAGGAGGGTTTTATTTAGACGAGGATACTTATAAGACTATTTATGGTGAGCTTAGTAAGGAGAAATCGAAAGCTGATGCTGTGGCTGTGGCTCATTTTTATGAGAGAATGCTTAAGGAGAACGCAATGTCTGTTGTTGCTGGAGAGGTTTCTGCTGTTGTTACTAAGGGGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGATGAAGCTCGTTTTGTCGGATAATTTTGTGATTAGGGTGTTGAAAGAACTAAGGGAACATCCTTTGAAAGCTTTGGCGTTTTTCCATTGGGTTGGTGGTGGTGGTAGTTCTTCTGGTTATCAACACAGTACTGTTACTTATAACGCAGCTTTGAGGGTTTTGGCTAGGCCTAACTCGGTTGCAGAGTTTTGGAGTGTTGTTGATGAAATGAAGACTGCAGGGTATGATATGGATCTTGACACTTATATAAAGGTTTCAAGGCAGTTTCAGAAATCTAGAATGATGGCTGAGACAGTTAAGCTTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGTTGAGGTATTTATCGGGTAGTCCCAATCCAGATTTGGATTTGGTGTTTCGGGTTTCGAGGAAATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTTTAACCAGTGTAGGTAGGTTTGACGAAGCTGAGGAAATCACCAAGGCTATGAGAAATGCGGGTTATGAGCCGGATAACATCACATACAGCCAACTCGTGTTTGGTCTTTGTAAAGCTAAGAGATTAGAAGAAGCACGAGGAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGACATAAAAACTTGGACTATACTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAAGGCCTTGGCGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGATGTCTTGATAGATGGGTTTGTTATCCACAACAAATTCGAGGGGGCAAGCATATTCCTTATGGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACGTACAAACTTCTTATAGACAAGCTGCTAAAGATCAAGAAGAGTGAAGAAGCACTAGATCTTCTTCAGATGATGAAGAAGCAAAATTACCCTGCGTATGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTTGGAAGACGCTAAGAAGTTCTTGGATGTGCTTAGCTCAAAGGATTCTCCTTCCTTTGCAGCCTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCTTCTCTTCATATGTCCCCATCACTTTAAAACTCACCCTAAAATCTCCGAACTCTTTGGTGCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

621

Amino Acids

71.03

Weight (kDa)

8.19

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	314 - 446	9.1e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	350 - 465	2.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	381 - 417	5e-06	PPR repeat family
PPR_1	PF12854	400 - 432	1.1e-09	PPR repeat
PPR_2	PF13041	414 - 452	4.7e-10	PPR repeat family
PPR_1	PF12854	435 - 466	2.4e-08	PPR repeat
PPR_2	PF13041	438 - 475	7.5e-09	PPR repeat family
PPR	PF01535	442 - 471	6.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0015170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48250
fragaria_vesca	FvH4_5g06330
malus_domestica	MD14G1171100.v1.1
prunus_persica	Prupe.5G165200_v2.0.a1
pyrus_communis	pycom06g14800 pycom14g14300
rosa_chinensis	RchiOBHm_Chr7g0192531
rosa_laevigata	RLG00000004358
rosa_multiflora	Rmu_sc0003108.1_g000034
rosa_roxburghii	Rroxscaffold_3G00262960
rosa_rugosa	Rorug07G0001900
rosa_samantha	Rh7AG126100 Rh7BG128500 Rh7CG130000 Rh7DG129900
rosa_wichuraiana	Rw7G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	483, 798
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	1196
AclWI	GGATC	2 cut(s)	897, 1333
AcsI	RAATTY	2 cut(s)	155, 1469
AcuI	CTGAAG	1 cut(s)	1586
AfaI	GTAC	5 cut(s)	5, 44, 367, 787, 1541
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	7 cut(s)	194, 700, 724, 915, 988, 1001, 1754
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
Alw26I	GTCTC	3 cut(s)	263, 941, 1104
AlwI	GGATC	2 cut(s)	897, 1333
AoxI	GGCC	2 cut(s)	824, 1374
ApeKI	GCWGC	6 cut(s)	403, 803, 1561, 1733, 1856, 1859
ApoI	RAATTY	2 cut(s)	155, 1469
Asp700I	GAANNNNTTC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	980
AsuHPI	GGTGA	4 cut(s)	509, 1168, 1516, 1820
AsuII	TTCGAA	2 cut(s)	160, 173
AvaII	GGWCC	1 cut(s)	980
BaeGI	GKGCMC	1 cut(s)	1350
BarI	GAAGNNNNNNTAC	2 cut(s)	1607, 1639
BauI	CACGAG	3 cut(s)	266, 1232, 1272
BbsI	GAAGAC	5 cut(s)	18, 99, 875, 1686, 1780
BbvCI	CCTCAGC	1 cut(s)	1167
BbvI	GCAGC	5 cut(s)	415, 815, 1548, 1745, 1843
BccI	CCATC	9 cut(s)	934, 967, 971, 1000, 1115, 1442, 1495, 1643, 1821
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciVI	GTATCC	3 cut(s)	315, 469, 1646
BclI	TGATCA	1 cut(s)	1285
BcoDI	GTCTC	3 cut(s)	263, 941, 1104
BfaI	CTAG	5 cut(s)	138, 822, 933, 1400, 1592
BfmI	CTRYAG	3 cut(s)	376, 873, 1857
BfrI	CTTAAG	1 cut(s)	563
BfuI	GTATCC	3 cut(s)	315, 469, 1646
BglII	AGATCT	2 cut(s)	51, 1594
BisI	GCNGC	6 cut(s)	404, 804, 1562, 1734, 1857, 1860
BlpI	GCTNAGC	1 cut(s)	1706
BlsI	GCNGC	6 cut(s)	405, 805, 1563, 1735, 1858, 1861
BmcAI	AGTACT	2 cut(s)	367, 787
Bme18I	GGWCC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	980
BmsI	GCATC	3 cut(s)	517, 1295, 1774
BpiI	GAAGAC	5 cut(s)	18, 99, 875, 1686, 1780
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	1167
Bpu1102I	GCTNAGC	1 cut(s)	1706
Bpu14I	TTCGAA	2 cut(s)	160, 173
BpuEI	CTTGAG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	1539
BsaBI	GATNNNNATC	1 cut(s)	888
BsaJI	CCNNGG	4 cut(s)	1179, 1342, 1377, 1526
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	1143
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	888
BseDI	CCNNGG	4 cut(s)	1179, 1342, 1377, 1526
BseGI	GGATG	5 cut(s)	435, 715, 982, 1310, 1705
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	4 cut(s)	278, 428, 936, 1158
BseNI	ACTGG	1 cut(s)	1143
BseRI	GAGGAG	1 cut(s)	1290
BseSI	GKGCMC	1 cut(s)	1350
BseXI	GCAGC	5 cut(s)	415, 815, 1548, 1745, 1843
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	826, 1376
BsiEI	CGRYCG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	1208
BslFI	GGGAC	4 cut(s)	119, 1023, 1684, 1794
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	263, 941, 1104
BsmFI	GGGAC	4 cut(s)	119, 1023, 1684, 1794
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	2 cut(s)	826, 1376
Bsp119I	TTCGAA	2 cut(s)	160, 173
Bsp1286I	GDGCHC	1 cut(s)	1350
Bsp1407I	TGTACA	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	1706
BspACI	CCGC	1 cut(s)	1196
BspANI	GGCC	2 cut(s)	826, 1376
BspCNI	CTCAG	4 cut(s)	279, 429, 937, 1159
BspFNI	CGCG	1 cut(s)	41
BspMAI	CTGCAG	2 cut(s)	877, 1861
BspPI	GGATC	2 cut(s)	897, 1333
BspT104I	TTCGAA	2 cut(s)	160, 173
BspTI	CTTAAG	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	1143
BssECI	CCNNGG	4 cut(s)	1179, 1342, 1377, 1526
BssSI	CACGAG	3 cut(s)	266, 1232, 1272
BssT1I	CCWWGG	4 cut(s)	1179, 1342, 1377, 1526
Bst2BI	CACGAG	3 cut(s)	266, 1232, 1272
Bst4CI	ACNGT	4 cut(s)	423, 785, 790, 952
Bst6I	CTCTTC	3 cut(s)	36, 1571, 1805
BstAFI	CTTAAG	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	1539
BstBI	TTCGAA	2 cut(s)	160, 173
BstC8I	GCNNGC	1 cut(s)	1483
BstF5I	GGATG	5 cut(s)	435, 715, 982, 1310, 1705
BstFNI	CGCG	1 cut(s)	41
BstMAI	GTCTC	3 cut(s)	263, 941, 1104
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	1388
BstSFI	CTRYAG	3 cut(s)	376, 873, 1857
BstSLI	GKGCMC	1 cut(s)	1350
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	5 cut(s)	415, 815, 1548, 1745, 1843
BstV2I	GAAGAC	5 cut(s)	18, 99, 875, 1686, 1780
BstX2I	RGATCY	3 cut(s)	51, 889, 1594
BstXI	CCANNNNNNTGG	1 cut(s)	749
BstYI	RGATCY	3 cut(s)	51, 889, 1594
BsuI	GTATCC	3 cut(s)	315, 469, 1646
BsuRI	GGCC	2 cut(s)	826, 1376
BtsCI	GGATG	5 cut(s)	435, 715, 982, 1310, 1705
BtsI	GCAGTG	1 cut(s)	1348
BtsIMutI	CAGTG	3 cut(s)	1150, 1348, 1779
Cac8I	GCNNGC	1 cut(s)	1483
Cfr13I	GGNCC	1 cut(s)	980
CseI	GACGC	1 cut(s)	1691
Csp6I	GTAC	5 cut(s)	4, 43, 366, 786, 1540
CviAII	CATG	1 cut(s)	1745
CviQI	GTAC	5 cut(s)	4, 43, 366, 786, 1540
DraI	TTTAAA	1 cut(s)	1822
Eam1104I	CTCTTC	3 cut(s)	36, 1571, 1805
EarI	CTCTTC	3 cut(s)	36, 1571, 1805
Eco130I	CCWWGG	4 cut(s)	1179, 1342, 1377, 1526
Eco147I	AGGCCT	2 cut(s)	826, 1376
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	1 cut(s)	1586
EcoT14I	CCWWGG	4 cut(s)	1179, 1342, 1377, 1526
ErhI	CCWWGG	4 cut(s)	1179, 1342, 1377, 1526
FaeI	CATG	1 cut(s)	1748
FalI	AAGNNNNNCTT	2 cut(s)	1679, 1711
FaqI	GGGAC	4 cut(s)	119, 1023, 1684, 1794
FatI	CATG	1 cut(s)	1744
FauI	CCCGC	1 cut(s)	1189
FauNDI	CATATG	1 cut(s)	1805
FbaI	TGATCA	1 cut(s)	1285
Fnu4HI	GCNGC	6 cut(s)	404, 804, 1562, 1734, 1857, 1860
FokI	GGATG	5 cut(s)	442, 702, 989, 1317, 1712
Fsp4HI	GCNGC	6 cut(s)	404, 804, 1562, 1734, 1857, 1860
FspBI	CTAG	5 cut(s)	138, 822, 933, 1400, 1592
GluI	GCNGC	6 cut(s)	404, 804, 1562, 1734, 1857, 1860
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	826, 1376
HapII	CCGG	1 cut(s)	1208
HgaI	GACGC	1 cut(s)	1691
Hin1II	CATG	1 cut(s)	1748
HindIII	AAGCTT	5 cut(s)	315, 726, 956, 1641, 1755
HpaII	CCGG	1 cut(s)	1208
HphI	GGTGA	4 cut(s)	509, 1168, 1516, 1820
Hpy188I	TCNGA	6 cut(s)	288, 438, 676, 927, 1605, 1843
HpyAV	CCTTC	3 cut(s)	227, 1734, 1763
HpyCH4III	ACNGT	4 cut(s)	423, 785, 790, 952
HpyCH4IV	ACGT	2 cut(s)	282, 1538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1388
HpySE526I	ACGT	2 cut(s)	282, 1538
Hsp92II	CATG	1 cut(s)	1748
Ksp22I	TGATCA	1 cut(s)	1285
Lsp1109I	GCAGC	5 cut(s)	415, 815, 1548, 1745, 1843
LweI	GCATC	3 cut(s)	517, 1295, 1774
MaeI	CTAG	5 cut(s)	138, 822, 933, 1400, 1592
MaeII	ACGT	2 cut(s)	282, 1538
MaeIII	GTNAC	2 cut(s)	610, 790
MflI	RGATCY	3 cut(s)	51, 889, 1594
MhlI	GDGCHC	1 cut(s)	1350
MluCI	AATT	9 cut(s)	155, 194, 276, 293, 647, 679, 1364, 1469, 1621
MluI	ACGCGT	1 cut(s)	39
MlyI	GAGTC	4 cut(s)	427, 1287, 1415, 1770
MmeI	TCCRAC	1 cut(s)	654
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	4 cut(s)	564, 954, 1139, 1821
MslI	CAYNNNNRTG	2 cut(s)	549, 1303
MspCI	CTTAAG	1 cut(s)	563
MspI	CCGG	1 cut(s)	1208
Mva1269I	GAATGC	1 cut(s)	564
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	1388
NdeI	CATATG	1 cut(s)	1805
NlaIII	CATG	1 cut(s)	1748
NspV	TTCGAA	2 cut(s)	160, 173
PceI	AGGCCT	2 cut(s)	826, 1376
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	6 cut(s)	119, 182, 347, 1085, 1125, 1718
PkrI	GCNGC	6 cut(s)	405, 805, 1563, 1735, 1858, 1861
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	4 cut(s)	427, 1286, 1415, 1770
PpsI	GAGTC	4 cut(s)	427, 1286, 1415, 1770
Ppu21I	YACGTR	1 cut(s)	1539
PsiI	TTATAA	2 cut(s)	483, 798
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	2 cut(s)	877, 1861
PsuI	RGATCY	3 cut(s)	51, 889, 1594
PvuI	CGATCG	1 cut(s)	65
RsaI	GTAC	5 cut(s)	5, 44, 367, 787, 1541
RsaNI	GTAC	5 cut(s)	4, 43, 366, 786, 1540
RseI	CAYNNNNRTG	2 cut(s)	549, 1303
SaqAI	TTAA	4 cut(s)	564, 954, 1139, 1821
SatI	GCNGC	6 cut(s)	404, 804, 1562, 1734, 1857, 1860
Sau96I	GGNCC	1 cut(s)	980
ScaI	AGTACT	2 cut(s)	367, 787
SchI	GAGTC	4 cut(s)	427, 1287, 1415, 1770
SduI	GDGCHC	1 cut(s)	1350
SfaNI	GCATC	3 cut(s)	517, 1295, 1774
SfcI	CTRYAG	3 cut(s)	376, 873, 1857
SfuI	TTCGAA	2 cut(s)	160, 173
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	2 cut(s)	549, 1303
SmlI	CTYRAG	2 cut(s)	203, 563
SmoI	CTYRAG	2 cut(s)	203, 563
Sse9I	AATT	9 cut(s)	155, 194, 276, 293, 647, 679, 1364, 1469, 1621
SseBI	AGGCCT	2 cut(s)	826, 1376
SsiI	CCGC	1 cut(s)	1196
SspMI	CTAG	5 cut(s)	138, 822, 933, 1400, 1592
StuI	AGGCCT	2 cut(s)	826, 1376
StyI	CCWWGG	4 cut(s)	1179, 1342, 1377, 1526
TaaI	ACNGT	4 cut(s)	423, 785, 790, 952
TaiI	ACGT	2 cut(s)	285, 1541
TasI	AATT	9 cut(s)	155, 194, 276, 293, 647, 679, 1364, 1469, 1621
TatI	WGTACW	3 cut(s)	3, 365, 785
TfiI	GAWTC	6 cut(s)	119, 182, 347, 1085, 1125, 1718
Tru1I	TTAA	4 cut(s)	564, 954, 1139, 1821
Tru9I	TTAA	4 cut(s)	564, 954, 1139, 1821
TscAI	CASTG	3 cut(s)	1150, 1355, 1786
TseI	GCWGC	6 cut(s)	403, 803, 1561, 1733, 1856, 1859
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	3 cut(s)	1150, 1355, 1786
Vha464I	CTTAAG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	2 cut(s)	155, 1469
XbaI	TCTAGA	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	3 cut(s)	749, 1048, 1235
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	5 cut(s)	138, 822, 933, 1400, 1592
ZrmI	AGTACT	2 cut(s)	367, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.