Pentatricopeptide repeat-containing protein At3g48250
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48250 |
| fragaria_vesca | FvH4_5g06330 |
| malus_domestica | MD14G1171100.v1.1 |
| prunus_persica | Prupe.5G165200_v2.0.a1 |
| pyrus_communis | pycom06g14800 pycom14g14300 |
| rosa_chinensis | RchiOBHm_Chr7g0192531 |
| rosa_laevigata | RLG00000004358 |
| rosa_multiflora | Rmu_sc0003108.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00262960 |
| rosa_rugosa | Rorug07G0001900 |
| rosa_samantha | Rh7AG126100 Rh7BG128500 Rh7CG130000 Rh7DG129900 |
| rosa_wichuraiana | Rw7G010860 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1617 |
| Acc36I | ACCTGC | 1 cut(s) | 680 |
| AccII | CGCG | 1 cut(s) | 174 |
| AciI | CCGC | 3 cut(s) | 764, 962, 1548 |
| AclWI | GGATC | 2 cut(s) | 260, 1448 |
| AcoI | YGGCCR | 2 cut(s) | 207, 423 |
| AcsI | RAATTY | 6 cut(s) | 534, 893, 939, 1478, 1505, 1650 |
| AflII | CTTAAG | 1 cut(s) | 1271 |
| AjnI | CCWGG | 2 cut(s) | 55, 186 |
| AluBI | AGCT | 6 cut(s) | 481, 551, 558, 772, 781, 1437 |
| AluI | AGCT | 6 cut(s) | 481, 551, 558, 772, 781, 1437 |
| Alw21I | GWGCWC | 1 cut(s) | 783 |
| Alw26I | GTCTC | 3 cut(s) | 106, 1066, 1584 |
| AlwI | GGATC | 2 cut(s) | 260, 1448 |
| AoxI | GGCC | 5 cut(s) | 207, 423, 793, 1065, 1599 |
| ApeKI | GCWGC | 6 cut(s) | 120, 141, 822, 1169, 1499, 1691 |
| ApoI | RAATTY | 6 cut(s) | 534, 893, 939, 1478, 1505, 1650 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1388, 1420 |
| AspLEI | GCGC | 2 cut(s) | 176, 1192 |
| AspS9I | GGNCC | 3 cut(s) | 190, 794, 1143 |
| AsuHPI | GGTGA | 3 cut(s) | 778, 1330, 1658 |
| AsuII | TTCGAA | 1 cut(s) | 1636 |
| AvaII | GGWCC | 2 cut(s) | 190, 1143 |
| BaeGI | GKGCMC | 1 cut(s) | 228 |
| BanII | GRGCYC | 2 cut(s) | 8, 783 |
| BauI | CACGAG | 1 cut(s) | 177 |
| Bbv12I | GWGCWC | 1 cut(s) | 783 |
| BbvI | GCAGC | 6 cut(s) | 132, 153, 834, 1156, 1486, 1678 |
| BccI | CCATC | 7 cut(s) | 334, 550, 748, 781, 785, 929, 1099 |
| BceAI | ACGGC | 2 cut(s) | 338, 1203 |
| BciT130I | CCWGG | 2 cut(s) | 57, 188 |
| BcoDI | GTCTC | 3 cut(s) | 106, 1066, 1584 |
| BfaI | CTAG | 1 cut(s) | 701 |
| BfmI | CTRYAG | 3 cut(s) | 903, 1500, 1671 |
| BfoI | RGCGCY | 1 cut(s) | 1193 |
| BfrI | CTTAAG | 1 cut(s) | 1271 |
| BfuAI | ACCTGC | 1 cut(s) | 680 |
| BisI | GCNGC | 7 cut(s) | 121, 142, 823, 1170, 1500, 1548, 1692 |
| BlsI | GCNGC | 7 cut(s) | 122, 143, 824, 1171, 1501, 1549, 1693 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 188 |
| Bme18I | GGWCC | 2 cut(s) | 190, 1143 |
| BmgT120I | GGNCC | 3 cut(s) | 190, 794, 1143 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 2 cut(s) | 57, 188 |
| BmsI | GCATC | 5 cut(s) | 751, 849, 1219, 1225, 1486 |
| Bpu10I | CCTNAGC | 1 cut(s) | 813 |
| Bpu14I | TTCGAA | 1 cut(s) | 1636 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1239 |
| BsaJI | CCNNGG | 3 cut(s) | 55, 158, 1340 |
| BsaWI | WCCGGW | 1 cut(s) | 584 |
| Bse1I | ACTGG | 1 cut(s) | 1251 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1239 |
| BseBI | CCWGG | 2 cut(s) | 57, 188 |
| BseDI | CCNNGG | 3 cut(s) | 55, 158, 1340 |
| BseGI | GGATG | 7 cut(s) | 387, 409, 766, 796, 1105, 1255, 1501 |
| BseJI | GATNNNNATC | 1 cut(s) | 1239 |
| BseMII | CTCAG | 6 cut(s) | 117, 234, 251, 827, 858, 1587 |
| BseNI | ACTGG | 1 cut(s) | 1251 |
| BseSI | GKGCMC | 1 cut(s) | 228 |
| BseX3I | CGGCCG | 1 cut(s) | 207 |
| BseXI | GCAGC | 6 cut(s) | 132, 153, 834, 1156, 1486, 1678 |
| BseYI | CCCAGC | 1 cut(s) | 455 |
| BsgI | GTGCAG | 1 cut(s) | 708 |
| Bsh1236I | CGCG | 1 cut(s) | 174 |
| Bsh1285I | CGRYCG | 1 cut(s) | 210 |
| BshFI | GGCC | 5 cut(s) | 209, 425, 795, 1067, 1601 |
| BsiEI | CGRYCG | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 783 |
| BsiSI | CCGG | 1 cut(s) | 585 |
| BsmAI | GTCTC | 3 cut(s) | 106, 1066, 1584 |
| BsmI | GAATGC | 1 cut(s) | 1403 |
| BsnI | GGCC | 5 cut(s) | 209, 425, 795, 1067, 1601 |
| Bsp119I | TTCGAA | 1 cut(s) | 1636 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 228, 783 |
| Bsp143I | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| BspACI | CCGC | 3 cut(s) | 764, 962, 1548 |
| BspANI | GGCC | 5 cut(s) | 209, 425, 795, 1067, 1601 |
| BspCNI | CTCAG | 6 cut(s) | 116, 233, 252, 826, 857, 1588 |
| BspFNI | CGCG | 1 cut(s) | 174 |
| BspHI | TCATGA | 3 cut(s) | 694, 783, 1134 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspMAI | CTGCAG | 2 cut(s) | 907, 1504 |
| BspMI | ACCTGC | 1 cut(s) | 680 |
| BspPI | GGATC | 2 cut(s) | 260, 1448 |
| BspQI | GCTCTTC | 1 cut(s) | 737 |
| BspT104I | TTCGAA | 1 cut(s) | 1636 |
| BspTI | CTTAAG | 1 cut(s) | 1271 |
| BsrI | ACTGG | 1 cut(s) | 1251 |
| BssECI | CCNNGG | 3 cut(s) | 55, 158, 1340 |
| BssMI | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| BssSI | CACGAG | 1 cut(s) | 177 |
| BssT1I | CCWWGG | 2 cut(s) | 158, 1340 |
| Bst2BI | CACGAG | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 2 cut(s) | 57, 188 |
| Bst4CI | ACNGT | 3 cut(s) | 246, 1040, 1166 |
| Bst6I | CTCTTC | 1 cut(s) | 737 |
| BstAFI | CTTAAG | 1 cut(s) | 1271 |
| BstBI | TTCGAA | 1 cut(s) | 1636 |
| BstC8I | GCNNGC | 5 cut(s) | 827, 964, 1087, 1347, 1682 |
| BstDEI | CTNAG | 8 cut(s) | 103, 220, 260, 530, 813, 844, 921, 1596 |
| BstF5I | GGATG | 7 cut(s) | 387, 409, 766, 796, 1105, 1255, 1501 |
| BstFNI | CGCG | 1 cut(s) | 174 |
| BstH2I | RGCGCY | 1 cut(s) | 1193 |
| BstHHI | GCGC | 2 cut(s) | 176, 1192 |
| BstKTI | GATC | 4 cut(s) | 255, 1215, 1243, 1456 |
| BstMAI | GTCTC | 3 cut(s) | 106, 1066, 1584 |
| BstMBI | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| BstMCI | CGRYCG | 1 cut(s) | 210 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 141, 778 |
| BstNI | CCWGG | 2 cut(s) | 57, 188 |
| BstNSI | RCATGY | 1 cut(s) | 829 |
| BstSCI | CCNGG | 2 cut(s) | 55, 186 |
| BstSFI | CTRYAG | 3 cut(s) | 903, 1500, 1671 |
| BstSLI | GKGCMC | 1 cut(s) | 228 |
| BstUI | CGCG | 1 cut(s) | 174 |
| BstV1I | GCAGC | 6 cut(s) | 132, 153, 834, 1156, 1486, 1678 |
| BstX2I | RGATCY | 1 cut(s) | 1453 |
| BstYI | RGATCY | 1 cut(s) | 1453 |
| BstZI | CGGCCG | 1 cut(s) | 207 |
| BsuRI | GGCC | 5 cut(s) | 209, 425, 795, 1067, 1601 |
| BtsCI | GGATG | 7 cut(s) | 387, 409, 766, 796, 1105, 1255, 1501 |
| BtsIMutI | CAGTG | 3 cut(s) | 111, 1162, 1494 |
| BveI | ACCTGC | 1 cut(s) | 680 |
| Cac8I | GCNNGC | 5 cut(s) | 827, 964, 1087, 1347, 1682 |
| CciI | TCATGA | 3 cut(s) | 694, 783, 1134 |
| CfoI | GCGC | 2 cut(s) | 176, 1192 |
| Cfr13I | GGNCC | 3 cut(s) | 190, 794, 1143 |
| CseI | GACGC | 1 cut(s) | 26 |
| CsiI | ACCWGGT | 1 cut(s) | 186 |
| CviAII | CATG | 6 cut(s) | 125, 695, 784, 826, 1135, 1559 |
| DdeI | CTNAG | 8 cut(s) | 103, 220, 260, 530, 813, 844, 921, 1596 |
| DpnI | GATC | 4 cut(s) | 254, 1214, 1242, 1455 |
| DpnII | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| DraI | TTTAAA | 1 cut(s) | 1579 |
| EaeI | YGGCCR | 2 cut(s) | 207, 423 |
| EagI | CGGCCG | 1 cut(s) | 207 |
| Eam1104I | CTCTTC | 1 cut(s) | 737 |
| EarI | CTCTTC | 1 cut(s) | 737 |
| Ecl136II | GAGCTC | 1 cut(s) | 781 |
| EclXI | CGGCCG | 1 cut(s) | 207 |
| Eco130I | CCWWGG | 2 cut(s) | 158, 1340 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 783 |
| Eco32I | GATATC | 2 cut(s) | 76, 1132 |
| Eco47I | GGWCC | 2 cut(s) | 190, 1143 |
| Eco52I | CGGCCG | 1 cut(s) | 207 |
| Eco53kI | GAGCTC | 1 cut(s) | 781 |
| EcoICRI | GAGCTC | 1 cut(s) | 781 |
| EcoO109I | RGGNCCY | 1 cut(s) | 190 |
| EcoRI | GAATTC | 1 cut(s) | 939 |
| EcoRII | CCWGG | 2 cut(s) | 55, 186 |
| EcoRV | GATATC | 2 cut(s) | 76, 1132 |
| EcoT14I | CCWWGG | 2 cut(s) | 158, 1340 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 783 |
| ErhI | CCWWGG | 2 cut(s) | 158, 1340 |
| FaeI | CATG | 6 cut(s) | 128, 698, 787, 829, 1138, 1562 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1596, 1628 |
| FatI | CATG | 6 cut(s) | 124, 694, 783, 825, 1134, 1558 |
| FauI | CCCGC | 1 cut(s) | 955 |
| Fnu4HI | GCNGC | 7 cut(s) | 121, 142, 823, 1170, 1500, 1548, 1692 |
| FokI | GGATG | 7 cut(s) | 394, 416, 773, 803, 1112, 1262, 1508 |
| FriOI | GRGCYC | 2 cut(s) | 8, 783 |
| Fsp4HI | GCNGC | 7 cut(s) | 121, 142, 823, 1170, 1500, 1548, 1692 |
| FspBI | CTAG | 1 cut(s) | 701 |
| GlaI | GCGC | 2 cut(s) | 175, 1191 |
| GluI | GCNGC | 7 cut(s) | 121, 142, 823, 1170, 1500, 1548, 1692 |
| GsaI | CCCAGC | 1 cut(s) | 459 |
| HaeII | RGCGCY | 1 cut(s) | 1193 |
| HaeIII | GGCC | 5 cut(s) | 209, 425, 795, 1067, 1601 |
| HapII | CCGG | 1 cut(s) | 585 |
| HgaI | GACGC | 1 cut(s) | 26 |
| HhaI | GCGC | 2 cut(s) | 176, 1192 |
| Hin1II | CATG | 6 cut(s) | 128, 698, 787, 829, 1138, 1562 |
| Hin6I | GCGC | 2 cut(s) | 174, 1190 |
| HinP1I | GCGC | 2 cut(s) | 174, 1190 |
| HincII | GTYRAC | 3 cut(s) | 36, 184, 1183 |
| HindII | GTYRAC | 3 cut(s) | 36, 184, 1183 |
| HindIII | AAGCTT | 1 cut(s) | 549 |
| HinfI | GANTC | 9 cut(s) | 128, 233, 628, 644, 899, 1153, 1266, 1327, 1592 |
| HpaII | CCGG | 1 cut(s) | 585 |
| HphI | GGTGA | 3 cut(s) | 778, 1330, 1658 |
| Hpy166II | GTNNAC | 3 cut(s) | 36, 184, 1183 |
| Hpy188I | TCNGA | 5 cut(s) | 261, 445, 499, 741, 1597 |
| Hpy188III | TCNNGA | 7 cut(s) | 695, 784, 815, 1127, 1135, 1255, 1451 |
| Hpy8I | GTNNAC | 3 cut(s) | 36, 184, 1183 |
| Hpy99I | CGWCG | 2 cut(s) | 403, 1400 |
| HpyAV | CCTTC | 8 cut(s) | 412, 517, 676, 816, 988, 1522, 1577, 1670 |
| HpyCH4III | ACNGT | 3 cut(s) | 246, 1040, 1166 |
| HpyCH4IV | ACGT | 3 cut(s) | 196, 302, 491 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 141, 778 |
| HpyF3I | CTNAG | 8 cut(s) | 103, 220, 260, 530, 813, 844, 921, 1596 |
| HpySE526I | ACGT | 3 cut(s) | 196, 302, 491 |
| Hsp92II | CATG | 6 cut(s) | 128, 698, 787, 829, 1138, 1562 |
| HspAI | GCGC | 2 cut(s) | 174, 1190 |
| Kzo9I | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| LguI | GCTCTTC | 1 cut(s) | 737 |
| LmnI | GCTCC | 3 cut(s) | 11, 478, 837 |
| Lsp1109I | GCAGC | 6 cut(s) | 132, 153, 834, 1156, 1486, 1678 |
| LweI | GCATC | 5 cut(s) | 751, 849, 1219, 1225, 1486 |
| MabI | ACCWGGT | 1 cut(s) | 186 |
| MaeI | CTAG | 1 cut(s) | 701 |
| MaeII | ACGT | 3 cut(s) | 196, 302, 491 |
| MaeIII | GTNAC | 1 cut(s) | 197 |
| MalI | GATC | 4 cut(s) | 254, 1214, 1242, 1455 |
| MboI | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| MboII | GAAGA | 8 cut(s) | 79, 349, 427, 754, 1091, 1294, 1406, 1438 |
| MfeI | CAATTG | 1 cut(s) | 648 |
| MflI | RGATCY | 1 cut(s) | 1453 |
| MhlI | GDGCHC | 3 cut(s) | 8, 228, 783 |
| MlyI | GAGTC | 4 cut(s) | 638, 908, 1321, 1586 |
| MseI | TTAA | 7 cut(s) | 50, 327, 483, 1272, 1334, 1421, 1578 |
| MslI | CAYNNNNRTG | 1 cut(s) | 293 |
| MspCI | CTTAAG | 1 cut(s) | 1271 |
| MspI | CCGG | 1 cut(s) | 585 |
| MspR9I | CCNGG | 2 cut(s) | 57, 188 |
| MunI | CAATTG | 1 cut(s) | 648 |
| Mva1269I | GAATGC | 1 cut(s) | 1403 |
| MvaI | CCWGG | 2 cut(s) | 57, 188 |
| MvnI | CGCG | 1 cut(s) | 174 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 141, 778 |
| NdeII | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| NlaIII | CATG | 6 cut(s) | 128, 698, 787, 829, 1138, 1562 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmeAIII | GCCGAG | 1 cut(s) | 185 |
| NmuCI | GTSAC | 1 cut(s) | 197 |
| NspI | RCATGY | 1 cut(s) | 829 |
| NspV | TTCGAA | 1 cut(s) | 1636 |
| PaeI | GCATGC | 1 cut(s) | 829 |
| PagI | TCATGA | 3 cut(s) | 694, 783, 1134 |
| PciSI | GCTCTTC | 1 cut(s) | 737 |
| PctI | GAATGC | 1 cut(s) | 1403 |
| PfeI | GAWTC | 5 cut(s) | 128, 233, 628, 1153, 1266 |
| PflFI | GACNNNGTC | 1 cut(s) | 188 |
| PkrI | GCNGC | 7 cut(s) | 122, 143, 824, 1171, 1501, 1549, 1693 |
| PleI | GAGTC | 4 cut(s) | 638, 907, 1321, 1586 |
| PpsI | GAGTC | 4 cut(s) | 638, 907, 1321, 1586 |
| PpuMI | RGGWCCY | 1 cut(s) | 190 |
| PsiI | TTATAA | 1 cut(s) | 1617 |
| Psp124BI | GAGCTC | 1 cut(s) | 783 |
| Psp5II | RGGWCCY | 1 cut(s) | 190 |
| Psp6I | CCWGG | 2 cut(s) | 55, 186 |
| PspFI | CCCAGC | 1 cut(s) | 455 |
| PspGI | CCWGG | 2 cut(s) | 55, 186 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PspPI | GGNCC | 3 cut(s) | 190, 794, 1143 |
| PspPPI | RGGWCCY | 1 cut(s) | 190 |
| PstI | CTGCAG | 2 cut(s) | 907, 1504 |
| PsuI | RGATCY | 1 cut(s) | 1453 |
| PsyI | GACNNNGTC | 1 cut(s) | 188 |
| RseI | CAYNNNNRTG | 1 cut(s) | 293 |
| SacI | GAGCTC | 1 cut(s) | 783 |
| SapI | GCTCTTC | 1 cut(s) | 737 |
| SaqAI | TTAA | 7 cut(s) | 50, 327, 483, 1272, 1334, 1421, 1578 |
| SatI | GCNGC | 7 cut(s) | 121, 142, 823, 1170, 1500, 1548, 1692 |
| Sau3AI | GATC | 4 cut(s) | 252, 1212, 1240, 1453 |
| Sau96I | GGNCC | 3 cut(s) | 190, 794, 1143 |
| SchI | GAGTC | 4 cut(s) | 638, 908, 1321, 1586 |
| ScrFI | CCNGG | 2 cut(s) | 57, 188 |
| SduI | GDGCHC | 3 cut(s) | 8, 228, 783 |
| SexAI | ACCWGGT | 1 cut(s) | 186 |
| SfaNI | GCATC | 5 cut(s) | 751, 849, 1219, 1225, 1486 |
| SfcI | CTRYAG | 3 cut(s) | 903, 1500, 1671 |
| SfuI | TTCGAA | 1 cut(s) | 1636 |
| SinI | GGWCC | 2 cut(s) | 190, 1143 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 293 |
| SmlI | CTYRAG | 1 cut(s) | 1271 |
| SmoI | CTYRAG | 1 cut(s) | 1271 |
| SphI | GCATGC | 1 cut(s) | 829 |
| SsiI | CCGC | 3 cut(s) | 764, 962, 1548 |
| SspI | AATATT | 1 cut(s) | 1469 |
| SspMI | CTAG | 1 cut(s) | 701 |
| SstI | GAGCTC | 1 cut(s) | 783 |
| StyD4I | CCNGG | 2 cut(s) | 55, 186 |
| StyI | CCWWGG | 2 cut(s) | 158, 1340 |
| TaaI | ACNGT | 3 cut(s) | 246, 1040, 1166 |
| TaiI | ACGT | 3 cut(s) | 199, 305, 494 |
| TaqI | TCGA | 7 cut(s) | 131, 545, 897, 1215, 1368, 1395, 1636 |
| TaqII | GACCGA | 1 cut(s) | 563 |
| TauI | GCSGC | 1 cut(s) | 1550 |
| TfiI | GAWTC | 5 cut(s) | 128, 233, 628, 1153, 1266 |
| Tru1I | TTAA | 7 cut(s) | 50, 327, 483, 1272, 1334, 1421, 1578 |
| Tru9I | TTAA | 7 cut(s) | 50, 327, 483, 1272, 1334, 1421, 1578 |
| TscAI | CASTG | 3 cut(s) | 111, 1169, 1494 |
| TseFI | GTSAC | 1 cut(s) | 197 |
| TseI | GCWGC | 6 cut(s) | 120, 141, 822, 1169, 1499, 1691 |
| Tsp45I | GTSAC | 1 cut(s) | 197 |
| TspGWI | ACGGA | 3 cut(s) | 416, 850, 1278 |
| TspRI | CASTG | 3 cut(s) | 111, 1169, 1494 |
| Tth111I | GACNNNGTC | 1 cut(s) | 188 |
| Vha464I | CTTAAG | 1 cut(s) | 1271 |
| VpaK11BI | GGWCC | 2 cut(s) | 190, 1143 |
| XapI | RAATTY | 6 cut(s) | 534, 893, 939, 1478, 1505, 1650 |
| XceI | RCATGY | 1 cut(s) | 829 |
| XspI | CTAG | 1 cut(s) | 701 |