Prupe.5G165200_v2.0.a1

Pentatricopeptide repeat-containing protein At3g48250

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14363766 .. 14365982
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G165200.1

Sequence Viewer

Length: 1698 bp
ATGGGCTCCAATTTGGACGCAACTCAATTCGGGTTGACCCGAAAAGGCTTAAACCCTGGAAATCCCCTAATTGATATCATTGGCTTCTTCTGTGGTGTAGTCTCAGTGAAAAAGTATAGCAGCCATGAATCGAGCAAAGGCAGCGTTGCTCAAAACCCTTGGCTTCGCCAACGCGCTCGTGTTGACCAGGTCCTACGTCACAACTCGGCCGATTTGTTCTCAGGGCACAAGGATTCAATGAAACAGTTTTGGATCACTCTGAGGCAAATGAAAGAGCAAGGCTTTTACATTGAAGTGCAAACGTATTCGGCAATCGCTGAACGGCTTAAAAAGGGGAAGATGGATAATGATGTTGTGGCTTTCAAGCATTTTTTTGAAAGGATGATGAAAGATAATGCGACGGATGAGGTTGCGAAGAAGGTGGCCGATGTTGTTTCAGGGTCAGAGTGGAGTGCTGGGATTGAGAAAGAGTTGGGGGAGCTTAAAATTACGTTATCTGATAATTTTGTCGTAAGGGTATTGAAGGAACTTAGAATTTGCCCATCGAAAGCTTTGAGCTTTTTCCATTGGGTCGGTCAAAGTTCCGGTTATGAACACAATACTATCACATATAATGCAGTTGCAAGGATTCTTGCACAGGCTGACTCAATTGGGGAGTTTTGGAGTGTGATTGAGGAAATGAAGGGTGCAGGTCATGAACTAGATTTGGACACTTATATAAAGATTACGAGGCAGTTTCAGAAGAGCAAGATGATGGAGGATGCGGTGAAGCTATATGAGCTCATGATGGATGGCCCGTATAAGCCTTCTGCTCAGGATTGCAGCATGCTTTTACGGAGCATCTCAGCAAATGATAAACCAGATTTGGATATGGTGTTTAGAGTTGCAAAGAAATTCGAGTCTGCAGGGAATACACTCTCTAAGGCTGTTTATGATGGAATTCATAGGTCTTTGACAAGTGCGGGCAGTTTTGATGAAGCAGAGAAAATTACGAAGGTTATGAGAAATGCAGGGTATGAGCCAGACAACATTACATACAGTCAGTTGGTCTTTGGACTTTGTAAGGCCAAGAGACTTGAAGAAGCCTGCAAAGTGCTGGATGAGATGGAAGCAAATGGGTGTGTTCCTGATATCATGACTTGGACCATTTTGATTCAAGGACACTGTGCTGCTAATGAAGTTGACACGGCGCTGGTTTGTTTTGCAAAGATGATCGAAAAAGGCTGTGATGCTGATGCTGATCTACTGGATGTCTTGATAAACGGATTCCTTAAGCAGAGGAAGATAGAGGGTGCATACAAATTGCTTATTGAAATGGTGAATATGACTCGTTTAAGACCTTGGCAAGCCACATACAAAAATCTTATCGAAAACCTGTTAGGAGTTAGAAAACTCGACGAAGCATTCGCACTTCTTCATTTAATGAAGAAACAGAGCTACCCACCTTATCCAGATCCTTTTGTCCAATATTTATCAAAATTTGGTTCAGTGGAGGATGCTGCAGAATTTTTCAAGGCATTGTCTGTGAAGGAATATCCCTCGTCTGCCGCTTATGTCCATGTTTTCAAATCATTCTTTAAAGAAGGTAGAGACTCTGAGGCCAAAGAACTGCTTTATAAATGCCCTTATCATATTCGAAAACTTGGTGAAATTTCCAAACTTTTTGGTTCTACAGAAGGCAAGCAGACTGCTGCTTGA

Protein Analysis

566

Amino Acids

63.73

Weight (kDa)

7.54

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48250
fragaria_vesca FvH4_5g06330
malus_domestica MD14G1171100.v1.1
prunus_persica Prupe.5G165200_v2.0.a1
pyrus_communis pycom06g14800 pycom14g14300
rosa_chinensis RchiOBHm_Chr7g0192531
rosa_laevigata RLG00000004358
rosa_multiflora Rmu_sc0003108.1_g000034
rosa_roxburghii Rroxscaffold_3G00262960
rosa_rugosa Rorug07G0001900
rosa_samantha Rh7AG126100 Rh7BG128500 Rh7CG130000 Rh7DG129900
rosa_wichuraiana Rw7G010860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1617
Acc36I ACCTGC 1 cut(s) 680
AccII CGCG 1 cut(s) 174
AciI CCGC 3 cut(s) 764, 962, 1548
AclWI GGATC 2 cut(s) 260, 1448
AcoI YGGCCR 2 cut(s) 207, 423
AcsI RAATTY 6 cut(s) 534, 893, 939, 1478, 1505, 1650
AflII CTTAAG 1 cut(s) 1271
AjnI CCWGG 2 cut(s) 55, 186
AluBI AGCT 6 cut(s) 481, 551, 558, 772, 781, 1437
AluI AGCT 6 cut(s) 481, 551, 558, 772, 781, 1437
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 3 cut(s) 106, 1066, 1584
AlwI GGATC 2 cut(s) 260, 1448
AoxI GGCC 5 cut(s) 207, 423, 793, 1065, 1599
ApeKI GCWGC 6 cut(s) 120, 141, 822, 1169, 1499, 1691
ApoI RAATTY 6 cut(s) 534, 893, 939, 1478, 1505, 1650
ArsI GACNNNNNNTTYG 2 cut(s) 1388, 1420
AspLEI GCGC 2 cut(s) 176, 1192
AspS9I GGNCC 3 cut(s) 190, 794, 1143
AsuHPI GGTGA 3 cut(s) 778, 1330, 1658
AsuII TTCGAA 1 cut(s) 1636
AvaII GGWCC 2 cut(s) 190, 1143
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 2 cut(s) 8, 783
BauI CACGAG 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 6 cut(s) 132, 153, 834, 1156, 1486, 1678
BccI CCATC 7 cut(s) 334, 550, 748, 781, 785, 929, 1099
BceAI ACGGC 2 cut(s) 338, 1203
BciT130I CCWGG 2 cut(s) 57, 188
BcoDI GTCTC 3 cut(s) 106, 1066, 1584
BfaI CTAG 1 cut(s) 701
BfmI CTRYAG 3 cut(s) 903, 1500, 1671
BfoI RGCGCY 1 cut(s) 1193
BfrI CTTAAG 1 cut(s) 1271
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 7 cut(s) 121, 142, 823, 1170, 1500, 1548, 1692
BlsI GCNGC 7 cut(s) 122, 143, 824, 1171, 1501, 1549, 1693
Bme1390I CCNGG 2 cut(s) 57, 188
Bme18I GGWCC 2 cut(s) 190, 1143
BmgT120I GGNCC 3 cut(s) 190, 794, 1143
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 2 cut(s) 57, 188
BmsI GCATC 5 cut(s) 751, 849, 1219, 1225, 1486
Bpu10I CCTNAGC 1 cut(s) 813
Bpu14I TTCGAA 1 cut(s) 1636
BsaBI GATNNNNATC 1 cut(s) 1239
BsaJI CCNNGG 3 cut(s) 55, 158, 1340
BsaWI WCCGGW 1 cut(s) 584
Bse1I ACTGG 1 cut(s) 1251
Bse8I GATNNNNATC 1 cut(s) 1239
BseBI CCWGG 2 cut(s) 57, 188
BseDI CCNNGG 3 cut(s) 55, 158, 1340
BseGI GGATG 7 cut(s) 387, 409, 766, 796, 1105, 1255, 1501
BseJI GATNNNNATC 1 cut(s) 1239
BseMII CTCAG 6 cut(s) 117, 234, 251, 827, 858, 1587
BseNI ACTGG 1 cut(s) 1251
BseSI GKGCMC 1 cut(s) 228
BseX3I CGGCCG 1 cut(s) 207
BseXI GCAGC 6 cut(s) 132, 153, 834, 1156, 1486, 1678
BseYI CCCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 5 cut(s) 209, 425, 795, 1067, 1601
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 1 cut(s) 585
BsmAI GTCTC 3 cut(s) 106, 1066, 1584
BsmI GAATGC 1 cut(s) 1403
BsnI GGCC 5 cut(s) 209, 425, 795, 1067, 1601
Bsp119I TTCGAA 1 cut(s) 1636
Bsp1286I GDGCHC 3 cut(s) 8, 228, 783
Bsp143I GATC 4 cut(s) 252, 1212, 1240, 1453
BspACI CCGC 3 cut(s) 764, 962, 1548
BspANI GGCC 5 cut(s) 209, 425, 795, 1067, 1601
BspCNI CTCAG 6 cut(s) 116, 233, 252, 826, 857, 1588
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 3 cut(s) 694, 783, 1134
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 2 cut(s) 907, 1504
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 2 cut(s) 260, 1448
BspQI GCTCTTC 1 cut(s) 737
BspT104I TTCGAA 1 cut(s) 1636
BspTI CTTAAG 1 cut(s) 1271
BsrI ACTGG 1 cut(s) 1251
BssECI CCNNGG 3 cut(s) 55, 158, 1340
BssMI GATC 4 cut(s) 252, 1212, 1240, 1453
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 158, 1340
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 57, 188
Bst4CI ACNGT 3 cut(s) 246, 1040, 1166
Bst6I CTCTTC 1 cut(s) 737
BstAFI CTTAAG 1 cut(s) 1271
BstBI TTCGAA 1 cut(s) 1636
BstC8I GCNNGC 5 cut(s) 827, 964, 1087, 1347, 1682
BstDEI CTNAG 8 cut(s) 103, 220, 260, 530, 813, 844, 921, 1596
BstF5I GGATG 7 cut(s) 387, 409, 766, 796, 1105, 1255, 1501
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 2 cut(s) 176, 1192
BstKTI GATC 4 cut(s) 255, 1215, 1243, 1456
BstMAI GTCTC 3 cut(s) 106, 1066, 1584
BstMBI GATC 4 cut(s) 252, 1212, 1240, 1453
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 2 cut(s) 141, 778
BstNI CCWGG 2 cut(s) 57, 188
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 2 cut(s) 55, 186
BstSFI CTRYAG 3 cut(s) 903, 1500, 1671
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 6 cut(s) 132, 153, 834, 1156, 1486, 1678
BstX2I RGATCY 1 cut(s) 1453
BstYI RGATCY 1 cut(s) 1453
BstZI CGGCCG 1 cut(s) 207
BsuRI GGCC 5 cut(s) 209, 425, 795, 1067, 1601
BtsCI GGATG 7 cut(s) 387, 409, 766, 796, 1105, 1255, 1501
BtsIMutI CAGTG 3 cut(s) 111, 1162, 1494
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 5 cut(s) 827, 964, 1087, 1347, 1682
CciI TCATGA 3 cut(s) 694, 783, 1134
CfoI GCGC 2 cut(s) 176, 1192
Cfr13I GGNCC 3 cut(s) 190, 794, 1143
CseI GACGC 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 186
CviAII CATG 6 cut(s) 125, 695, 784, 826, 1135, 1559
DdeI CTNAG 8 cut(s) 103, 220, 260, 530, 813, 844, 921, 1596
DpnI GATC 4 cut(s) 254, 1214, 1242, 1455
DpnII GATC 4 cut(s) 252, 1212, 1240, 1453
DraI TTTAAA 1 cut(s) 1579
EaeI YGGCCR 2 cut(s) 207, 423
EagI CGGCCG 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 737
Ecl136II GAGCTC 1 cut(s) 781
EclXI CGGCCG 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 158, 1340
Eco24I GRGCYC 2 cut(s) 8, 783
Eco32I GATATC 2 cut(s) 76, 1132
Eco47I GGWCC 2 cut(s) 190, 1143
Eco52I CGGCCG 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 939
EcoRII CCWGG 2 cut(s) 55, 186
EcoRV GATATC 2 cut(s) 76, 1132
EcoT14I CCWWGG 2 cut(s) 158, 1340
EcoT38I GRGCYC 2 cut(s) 8, 783
ErhI CCWWGG 2 cut(s) 158, 1340
FaeI CATG 6 cut(s) 128, 698, 787, 829, 1138, 1562
FalI AAGNNNNNCTT 2 cut(s) 1596, 1628
FatI CATG 6 cut(s) 124, 694, 783, 825, 1134, 1558
FauI CCCGC 1 cut(s) 955
Fnu4HI GCNGC 7 cut(s) 121, 142, 823, 1170, 1500, 1548, 1692
FokI GGATG 7 cut(s) 394, 416, 773, 803, 1112, 1262, 1508
FriOI GRGCYC 2 cut(s) 8, 783
Fsp4HI GCNGC 7 cut(s) 121, 142, 823, 1170, 1500, 1548, 1692
FspBI CTAG 1 cut(s) 701
GlaI GCGC 2 cut(s) 175, 1191
GluI GCNGC 7 cut(s) 121, 142, 823, 1170, 1500, 1548, 1692
GsaI CCCAGC 1 cut(s) 459
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 5 cut(s) 209, 425, 795, 1067, 1601
HapII CCGG 1 cut(s) 585
HgaI GACGC 1 cut(s) 26
HhaI GCGC 2 cut(s) 176, 1192
Hin1II CATG 6 cut(s) 128, 698, 787, 829, 1138, 1562
Hin6I GCGC 2 cut(s) 174, 1190
HinP1I GCGC 2 cut(s) 174, 1190
HincII GTYRAC 3 cut(s) 36, 184, 1183
HindII GTYRAC 3 cut(s) 36, 184, 1183
HindIII AAGCTT 1 cut(s) 549
HinfI GANTC 9 cut(s) 128, 233, 628, 644, 899, 1153, 1266, 1327, 1592
HpaII CCGG 1 cut(s) 585
HphI GGTGA 3 cut(s) 778, 1330, 1658
Hpy166II GTNNAC 3 cut(s) 36, 184, 1183
Hpy188I TCNGA 5 cut(s) 261, 445, 499, 741, 1597
Hpy188III TCNNGA 7 cut(s) 695, 784, 815, 1127, 1135, 1255, 1451
Hpy8I GTNNAC 3 cut(s) 36, 184, 1183
Hpy99I CGWCG 2 cut(s) 403, 1400
HpyAV CCTTC 8 cut(s) 412, 517, 676, 816, 988, 1522, 1577, 1670
HpyCH4III ACNGT 3 cut(s) 246, 1040, 1166
HpyCH4IV ACGT 3 cut(s) 196, 302, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 778
HpyF3I CTNAG 8 cut(s) 103, 220, 260, 530, 813, 844, 921, 1596
HpySE526I ACGT 3 cut(s) 196, 302, 491
Hsp92II CATG 6 cut(s) 128, 698, 787, 829, 1138, 1562
HspAI GCGC 2 cut(s) 174, 1190
Kzo9I GATC 4 cut(s) 252, 1212, 1240, 1453
LguI GCTCTTC 1 cut(s) 737
LmnI GCTCC 3 cut(s) 11, 478, 837
Lsp1109I GCAGC 6 cut(s) 132, 153, 834, 1156, 1486, 1678
LweI GCATC 5 cut(s) 751, 849, 1219, 1225, 1486
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 1 cut(s) 701
MaeII ACGT 3 cut(s) 196, 302, 491
MaeIII GTNAC 1 cut(s) 197
MalI GATC 4 cut(s) 254, 1214, 1242, 1455
MboI GATC 4 cut(s) 252, 1212, 1240, 1453
MboII GAAGA 8 cut(s) 79, 349, 427, 754, 1091, 1294, 1406, 1438
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 1 cut(s) 1453
MhlI GDGCHC 3 cut(s) 8, 228, 783
MlyI GAGTC 4 cut(s) 638, 908, 1321, 1586
MseI TTAA 7 cut(s) 50, 327, 483, 1272, 1334, 1421, 1578
MslI CAYNNNNRTG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 1271
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 2 cut(s) 57, 188
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 1 cut(s) 1403
MvaI CCWGG 2 cut(s) 57, 188
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 141, 778
NdeII GATC 4 cut(s) 252, 1212, 1240, 1453
NlaIII CATG 6 cut(s) 128, 698, 787, 829, 1138, 1562
NlaIV GGNNCC 1 cut(s) 7
NmeAIII GCCGAG 1 cut(s) 185
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 829
NspV TTCGAA 1 cut(s) 1636
PaeI GCATGC 1 cut(s) 829
PagI TCATGA 3 cut(s) 694, 783, 1134
PciSI GCTCTTC 1 cut(s) 737
PctI GAATGC 1 cut(s) 1403
PfeI GAWTC 5 cut(s) 128, 233, 628, 1153, 1266
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 7 cut(s) 122, 143, 824, 1171, 1501, 1549, 1693
PleI GAGTC 4 cut(s) 638, 907, 1321, 1586
PpsI GAGTC 4 cut(s) 638, 907, 1321, 1586
PpuMI RGGWCCY 1 cut(s) 190
PsiI TTATAA 1 cut(s) 1617
Psp124BI GAGCTC 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 55, 186
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 55, 186
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 3 cut(s) 190, 794, 1143
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 2 cut(s) 907, 1504
PsuI RGATCY 1 cut(s) 1453
PsyI GACNNNGTC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 737
SaqAI TTAA 7 cut(s) 50, 327, 483, 1272, 1334, 1421, 1578
SatI GCNGC 7 cut(s) 121, 142, 823, 1170, 1500, 1548, 1692
Sau3AI GATC 4 cut(s) 252, 1212, 1240, 1453
Sau96I GGNCC 3 cut(s) 190, 794, 1143
SchI GAGTC 4 cut(s) 638, 908, 1321, 1586
ScrFI CCNGG 2 cut(s) 57, 188
SduI GDGCHC 3 cut(s) 8, 228, 783
SexAI ACCWGGT 1 cut(s) 186
SfaNI GCATC 5 cut(s) 751, 849, 1219, 1225, 1486
SfcI CTRYAG 3 cut(s) 903, 1500, 1671
SfuI TTCGAA 1 cut(s) 1636
SinI GGWCC 2 cut(s) 190, 1143
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 1271
SmoI CTYRAG 1 cut(s) 1271
SphI GCATGC 1 cut(s) 829
SsiI CCGC 3 cut(s) 764, 962, 1548
SspI AATATT 1 cut(s) 1469
SspMI CTAG 1 cut(s) 701
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 2 cut(s) 55, 186
StyI CCWWGG 2 cut(s) 158, 1340
TaaI ACNGT 3 cut(s) 246, 1040, 1166
TaiI ACGT 3 cut(s) 199, 305, 494
TaqI TCGA 7 cut(s) 131, 545, 897, 1215, 1368, 1395, 1636
TaqII GACCGA 1 cut(s) 563
TauI GCSGC 1 cut(s) 1550
TfiI GAWTC 5 cut(s) 128, 233, 628, 1153, 1266
Tru1I TTAA 7 cut(s) 50, 327, 483, 1272, 1334, 1421, 1578
Tru9I TTAA 7 cut(s) 50, 327, 483, 1272, 1334, 1421, 1578
TscAI CASTG 3 cut(s) 111, 1169, 1494
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 6 cut(s) 120, 141, 822, 1169, 1499, 1691
Tsp45I GTSAC 1 cut(s) 197
TspGWI ACGGA 3 cut(s) 416, 850, 1278
TspRI CASTG 3 cut(s) 111, 1169, 1494
Tth111I GACNNNGTC 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 1271
VpaK11BI GGWCC 2 cut(s) 190, 1143
XapI RAATTY 6 cut(s) 534, 893, 939, 1478, 1505, 1650
XceI RCATGY 1 cut(s) 829
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.