Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015170

Physical Location & Seq

Genomic Coordinates Forward (+)

9911745 .. 9914062

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGAATCGAGCAAAGGCGGTCCTCACATCTCTCCGAGTCGCCAACTCGCTAGTACTGAGTCGGGTCCACTCCACAACTCGGCCTCTTTGTTCTCAGGTGACTCACTTCCCTCATTTACTTTCAAATCAATCTCACAGTTCTCATTTCCTCAATACCCATCAAAGACTCTCCTTTTCCTCAACACCCAACTCGGTTCTGCAACTCGTTCTGGCCAATCAGTGGTCAGCTGAGTTAGAGGCCGAGTTGTCCGAGTCACACCCATCACTGACCCACGATGTGGTAATCTATGTTTTGAAGAAACTGGAAAAAGACCCACCAAAGGCTTCCAGTTTCTTCAATTGGGTCTGTGAGAAAAATGGGTTTAGGCCAAGCTCTTCGATTTTTAGCTTAATGCTTAGGGTTTTAGTGCATAAGGATACAATGAGACAGTTTTGGGCCACTCTGACGAGAATGAAGGAGGAAGGGTTTTACATTGATGTGCAGACGTATTTGGCGATATCGGAACAGCTTAGAACTGGGAAGATGGATGCCGACGTTGCGGCGTTCAAGCATTTTTATGAGAGGATGATTCAAGATAATGCTGGTGATGAGGTTGTGAAGAAGGTGCTGGATGTTGTTTTGGGGTCAGAGTGGAGTGATAAGGTTGAGAAAGAATTGGGGGAGCTCAACATTGTGTTATCGGATAATTTTGTCGTAAGGGTATTGAGGGATCTTAGAGTTTGCCCATCGAAAGCCTTGGGGTTTTTCCATTGGGTGAGCCGGTGTCCTGGTTATGAGCACAATAGTATTACATACAATGGAATTGCAAGGGTTCTTGGACAGGCTAATTCAATTGGGGAGTTTTGGAGTTTGATAGAGGAAATGAAGGCTGCGGGTCAGGAGCTGGATTTAGATACCTACATTAAGGTTTCGAGGCAGTTTCAGAAGAGCAAGATGATAGAGGATGCAGTGAAGCTTTATGAACTCATGATGGATGGCCCTTATAAGCCTTCTGTTCAGGATTGCAGCATGCTTTTAAGGAGCATCGCAGCAAGTGGGAAGCCAGATTTGGATTTGGTGTTTAGAGTTGCAAAGAAATTTGAGTCTGCAGGGGGTACACTATCTAAGGCTGTCTATGATGGGATTCACAGGTCTTTGACGAGTGCAGGTAGATTTGATGAAGCAGAGAATATTTTGAAGGTTATGAGAAACGCAGGGTTTGAGCCAGACAACATTACATATAGCCAAGTGGTCTTTGGGCTTTGCAAGGCCAAGAAACTCGAAGAAGCCTGTAAAGTGCTGGATGATATGGAAGAAAATGGATGTGTTCCTGATTTAAAGACTTGGACGATTTTGATTCAAGGCCATTGTGCTGCTAATGAAATTGACAAGGCGCTGATTTGTTTTGCAAAGATGATGGAAAAAGAATGTGAAGCGGATGCGGATCTTCTAGATGTCTTGATAAATGGATTCATTAAGCAGACGAAGGTAGATGGTGCATACAAACTGCTTATTGAAATGTTGAATACAGCTCGTGTAAGACCTTGGCAAGCCACTTTCAAAAATCTTATCGACAACCTACTGGGAGCTAGAAAACTCGAGGAAGCAATGGAGCTTCTTCACTTAATGAAGAAGCAGAGCTACCCGCCTTATCCAGAGCCTTTTGTCCGATACATATCAAAGTTTGGTTCTGTGGAGGATGCTTCAGAATTTTTCAAGGCATTGTCTGTGAAGGAATATCCATCCTCTGCAGCTTATGTCCACGTTTTCAAATCATTCTTTAAAGAAGGTAGACACTCTGAGGCCAAGGATCTGCTTTATAAATGCCCCCATCATATCCGAAAACTTGGTGAAGTTCGGAAACTTTTTGGTTCTACAGAAAGAAGCAAGACTACTGCTATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

628

Amino Acids

71.14

Weight (kDa)

7.88

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	344 - 464	7.7e-09	Fungal tetratrico peptide repeats
PPR_long	PF17177	350 - 443	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	379 - 416	2.2e-06	PPR repeat family
PPR_3	PF13812	391 - 447	6.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	399 - 431	1.1e-09	PPR repeat
PPR	PF01535	405 - 435	6e-06	PPR repeat
PPR_2	PF13041	413 - 450	1.2e-11	PPR repeat family
PPR_1	PF12854	433 - 465	2.5e-06	PPR repeat
PPR_2	PF13041	437 - 474	1.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48250
fragaria_vesca	FvH4_5g06330
malus_domestica	MD14G1171100.v1.1
prunus_persica	Prupe.5G165200_v2.0.a1
pyrus_communis	pycom06g14800 pycom14g14300
rosa_chinensis	RchiOBHm_Chr7g0192531
rosa_laevigata	RLG00000004358
rosa_multiflora	Rmu_sc0003108.1_g000034
rosa_roxburghii	Rroxscaffold_3G00262960
rosa_rugosa	Rorug07G0001900
rosa_samantha	Rh7AG126100 Rh7BG128500 Rh7CG130000 Rh7DG129900
rosa_wichuraiana	Rw7G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	984, 1800
Acc36I	ACCTGC	1 cut(s)	1136
AccB7I	CCANNNNNTGG	2 cut(s)	219, 277
AccI	GTMKAC	1 cut(s)	1771
AciI	CCGC	6 cut(s)	17, 539, 872, 1415, 1421, 1625
AclWI	GGATC	3 cut(s)	717, 1431, 1797
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	1076, 1688
AcuI	CTGAAG	1 cut(s)	1668
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	54, 1096
AfiI	CCNNNNNNNGG	4 cut(s)	78, 219, 277, 319
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	2 cut(s)	1031, 1063
Alw21I	GWGCWC	2 cut(s)	666, 780
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	3 cut(s)	717, 1431, 1797
AlwNI	CAGNNNCTG	1 cut(s)	883
Ama87I	CYCGRG	1 cut(s)	1577
AoxI	GGCC	9 cut(s)	80, 210, 237, 365, 435, 976, 1248, 1342, 1782
ApeKI	GCWGC	5 cut(s)	869, 1005, 1028, 1352, 1730
ApoI	RAATTY	2 cut(s)	1076, 1688
AspLEI	GCGC	1 cut(s)	1375
AspS9I	GGNCC	4 cut(s)	19, 64, 435, 977
AsuHPI	GGTGA	4 cut(s)	109, 596, 766, 1841
AvaI	CYCGRG	1 cut(s)	1577
AvaII	GGWCC	2 cut(s)	19, 64
BalI	TGGCCA	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	666
BarI	GAAGNNNNNNTAC	4 cut(s)	1604, 1636, 1855, 1887
BauI	CACGAG	1 cut(s)	1512
Bbv12I	GWGCWC	2 cut(s)	666, 780
BbvI	GCAGC	5 cut(s)	856, 1017, 1040, 1339, 1742
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	3 cut(s)	50, 1430, 1569
BfmI	CTRYAG	3 cut(s)	1086, 1728, 1854
BfoI	RGCGCY	1 cut(s)	1376
BfuAI	ACCTGC	1 cut(s)	1136
BfuI	GTATCC	1 cut(s)	409
BisI	GCNGC	6 cut(s)	540, 870, 1006, 1029, 1353, 1731
BlsI	GCNGC	6 cut(s)	541, 871, 1007, 1030, 1354, 1732
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	768
Bme18I	GGWCC	2 cut(s)	19, 64
BmeT110I	CYCGRG	1 cut(s)	1577
BmgT120I	GGNCC	4 cut(s)	19, 64, 435, 977
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	768
BmrI	ACTGGG	2 cut(s)	525, 1571
BmsI	GCATC	5 cut(s)	517, 934, 1032, 1408, 1669
BmuI	ACTGGG	2 cut(s)	525, 1571
Bpu10I	CCTNAGC	1 cut(s)	395
BsaBI	GATNNNNATC	2 cut(s)	1422, 1654
BsaJI	CCNNGG	3 cut(s)	735, 1523, 1785
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 219, 277, 319
Bse118I	RCCGGY	1 cut(s)	759
Bse1I	ACTGG	4 cut(s)	306, 327, 520, 1566
Bse3DI	GCAATG	1 cut(s)	1593
Bse8I	GATNNNNATC	2 cut(s)	1422, 1654
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	735, 1523, 1785
BseJI	GATNNNNATC	2 cut(s)	1422, 1654
BseLI	CCNNNNNNNGG	4 cut(s)	78, 219, 277, 319
BseMI	GCAATG	1 cut(s)	1593
BseMII	CTCAG	4 cut(s)	47, 107, 219, 1770
BseNI	ACTGG	4 cut(s)	306, 327, 520, 1566
BseXI	GCAGC	5 cut(s)	856, 1017, 1040, 1339, 1742
BsgI	GTGCAG	2 cut(s)	500, 1164
BshFI	GGCC	9 cut(s)	82, 212, 239, 367, 437, 978, 1250, 1344, 1784
BsiHKAI	GWGCWC	2 cut(s)	666, 780
BsiHKCI	CYCGRG	1 cut(s)	1577
BsiSI	CCGG	1 cut(s)	760
BslI	CCNNNNNNNGG	4 cut(s)	78, 219, 277, 319
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	9 cut(s)	82, 212, 239, 367, 437, 978, 1250, 1344, 1784
BsoBI	CYCGRG	1 cut(s)	1577
Bsp1286I	GDGCHC	2 cut(s)	666, 780
Bsp143I	GATC	3 cut(s)	709, 1423, 1789
BspACI	CCGC	6 cut(s)	17, 539, 872, 1415, 1421, 1625
BspANI	GGCC	9 cut(s)	82, 212, 239, 367, 437, 978, 1250, 1344, 1784
BspCNI	CTCAG	4 cut(s)	48, 106, 220, 1771
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	2 cut(s)	1090, 1732
BspMI	ACCTGC	1 cut(s)	1136
BspPI	GGATC	3 cut(s)	717, 1431, 1797
BspQI	GCTCTTC	2 cut(s)	379, 920
BsrDI	GCAATG	1 cut(s)	1593
BsrFI	RCCGGY	1 cut(s)	759
BsrI	ACTGG	4 cut(s)	306, 327, 520, 1566
BssAI	RCCGGY	1 cut(s)	759
BssECI	CCNNGG	3 cut(s)	735, 1523, 1785
BssMI	GATC	3 cut(s)	709, 1423, 1789
BssSI	CACGAG	1 cut(s)	1512
BssT1I	CCWWGG	3 cut(s)	735, 1523, 1785
Bst2BI	CACGAG	1 cut(s)	1512
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	137, 429
Bst6I	CTCTTC	2 cut(s)	379, 920
BstC8I	GCNNGC	2 cut(s)	1010, 1530
BstDEI	CTNAG	8 cut(s)	56, 93, 228, 395, 509, 713, 1104, 1779
BstH2I	RGCGCY	1 cut(s)	1376
BstHHI	GCGC	1 cut(s)	1375
BstKTI	GATC	3 cut(s)	712, 1426, 1792
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	3 cut(s)	709, 1423, 1789
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	1012
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	3 cut(s)	1086, 1728, 1854
BstV1I	GCAGC	5 cut(s)	856, 1017, 1040, 1339, 1742
BstX2I	RGATCY	3 cut(s)	709, 1423, 1789
BstYI	RGATCY	3 cut(s)	709, 1423, 1789
BsuI	GTATCC	1 cut(s)	409
BsuRI	GGCC	9 cut(s)	82, 212, 239, 367, 437, 978, 1250, 1344, 1784
BtgZI	GCGATG	1 cut(s)	1009
BtsI	GCAGTG	1 cut(s)	954
BtsIMutI	CAGTG	3 cut(s)	224, 263, 954
BveI	ACCTGC	1 cut(s)	1136
Cac8I	GCNNGC	2 cut(s)	1010, 1530
CaiI	CAGNNNCTG	1 cut(s)	883
CciI	TCATGA	1 cut(s)	966
CfoI	GCGC	1 cut(s)	1375
Cfr10I	RCCGGY	1 cut(s)	759
Cfr13I	GGNCC	4 cut(s)	19, 64, 435, 977
Csp6I	GTAC	2 cut(s)	53, 1095
CviAII	CATG	2 cut(s)	967, 1009
CviQI	GTAC	2 cut(s)	53, 1095
DdeI	CTNAG	8 cut(s)	56, 93, 228, 395, 509, 713, 1104, 1779
DpnI	GATC	3 cut(s)	711, 1425, 1791
DpnII	GATC	3 cut(s)	709, 1423, 1789
DraI	TTTAAA	2 cut(s)	1317, 1762
DraIII	CACNNNGTG	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	379, 920
EarI	CTCTTC	2 cut(s)	379, 920
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	3 cut(s)	735, 1523, 1785
Eco24I	GRGCYC	1 cut(s)	666
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	2 cut(s)	19, 64
Eco53kI	GAGCTC	1 cut(s)	664
Eco57I	CTGAAG	1 cut(s)	1668
Eco88I	CYCGRG	1 cut(s)	1577
EcoICRI	GAGCTC	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	766
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	3 cut(s)	735, 1523, 1785
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	3 cut(s)	735, 1523, 1785
FaeI	CATG	2 cut(s)	970, 1012
FatI	CATG	2 cut(s)	966, 1008
FauI	CCCGC	2 cut(s)	865, 1632
FblI	GTMKAC	1 cut(s)	1771
Fnu4HI	GCNGC	6 cut(s)	540, 870, 1006, 1029, 1353, 1731
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	6 cut(s)	540, 870, 1006, 1029, 1353, 1731
FspBI	CTAG	3 cut(s)	50, 1430, 1569
GlaI	GCGC	1 cut(s)	1374
GluI	GCNGC	6 cut(s)	540, 870, 1006, 1029, 1353, 1731
HaeII	RGCGCY	1 cut(s)	1376
HaeIII	GGCC	9 cut(s)	82, 212, 239, 367, 437, 978, 1250, 1344, 1784
HapII	CCGG	1 cut(s)	760
HhaI	GCGC	1 cut(s)	1375
Hin1II	CATG	2 cut(s)	970, 1012
Hin6I	GCGC	1 cut(s)	1373
HinP1I	GCGC	1 cut(s)	1373
HindIII	AAGCTT	1 cut(s)	953
HpaII	CCGG	1 cut(s)	760
HphI	GGTGA	4 cut(s)	109, 596, 766, 1841
Hpy166II	GTNNAC	4 cut(s)	67, 1097, 1741, 1772
Hpy188III	TCNNGA	8 cut(s)	572, 878, 967, 998, 1310, 1430, 1438, 1634
Hpy8I	GTNNAC	4 cut(s)	67, 1097, 1741, 1772
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	9 cut(s)	448, 455, 595, 859, 999, 1171, 1459, 1705, 1760
HpyCH4III	ACNGT	2 cut(s)	137, 429
HpyCH4IV	ACGT	3 cut(s)	485, 534, 1743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	8 cut(s)	56, 93, 228, 395, 509, 713, 1104, 1779
HpySE526I	ACGT	3 cut(s)	485, 534, 1743
Hsp92II	CATG	2 cut(s)	970, 1012
HspAI	GCGC	1 cut(s)	1373
Kzo9I	GATC	3 cut(s)	709, 1423, 1789
LguI	GCTCTTC	2 cut(s)	379, 920
LmnI	GCTCC	5 cut(s)	661, 880, 1020, 1565, 1591
Lsp1109I	GCAGC	5 cut(s)	856, 1017, 1040, 1339, 1742
LweI	GCATC	5 cut(s)	517, 934, 1032, 1408, 1669
MaeI	CTAG	3 cut(s)	50, 1430, 1569
MaeII	ACGT	3 cut(s)	485, 534, 1743
MaeIII	GTNAC	2 cut(s)	97, 252
MalI	GATC	3 cut(s)	711, 1425, 1791
MboI	GATC	3 cut(s)	709, 1423, 1789
MfeI	CAATTG	2 cut(s)	337, 831
MflI	RGATCY	3 cut(s)	709, 1423, 1789
MhlI	GDGCHC	2 cut(s)	666, 780
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	9 cut(s)	337, 653, 685, 801, 826, 831, 1076, 1362, 1688
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	6 cut(s)	45, 67, 94, 159, 260, 1091
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	8 cut(s)	389, 903, 1016, 1316, 1455, 1604, 1761, 1885
MslI	CAYNNNNRTG	2 cut(s)	476, 555
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	2 cut(s)	337, 831
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	1 cut(s)	536
NdeII	GATC	3 cut(s)	709, 1423, 1789
NlaIII	CATG	2 cut(s)	970, 1012
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	2 cut(s)	58, 265
NmuCI	GTSAC	2 cut(s)	97, 252
NspI	RCATGY	1 cut(s)	1012
PaeI	GCATGC	1 cut(s)	1012
PaeR7I	CTCGAG	1 cut(s)	1577
PagI	TCATGA	1 cut(s)	966
PciSI	GCTCTTC	2 cut(s)	379, 920
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PfeI	GAWTC	5 cut(s)	4, 568, 1123, 1336, 1449
PflMI	CCANNNNNTGG	2 cut(s)	219, 277
PkrI	GCNGC	6 cut(s)	541, 871, 1007, 1030, 1354, 1732
PleI	GAGTC	6 cut(s)	44, 66, 94, 159, 259, 1090
PpsI	GAGTC	6 cut(s)	44, 66, 94, 159, 259, 1090
PsiI	TTATAA	2 cut(s)	984, 1800
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	4 cut(s)	19, 64, 435, 977
PspXI	VCTCGAGB	1 cut(s)	1577
PstI	CTGCAG	2 cut(s)	1090, 1732
PstNI	CAGNNNCTG	1 cut(s)	883
PsuI	RGATCY	3 cut(s)	709, 1423, 1789
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	54, 1096
RsaNI	GTAC	2 cut(s)	53, 1095
RseI	CAYNNNNRTG	2 cut(s)	476, 555
SacI	GAGCTC	1 cut(s)	666
SapI	GCTCTTC	2 cut(s)	379, 920
SaqAI	TTAA	8 cut(s)	389, 903, 1016, 1316, 1455, 1604, 1761, 1885
SatI	GCNGC	6 cut(s)	540, 870, 1006, 1029, 1353, 1731
Sau3AI	GATC	3 cut(s)	709, 1423, 1789
Sau96I	GGNCC	4 cut(s)	19, 64, 435, 977
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	6 cut(s)	45, 67, 94, 159, 260, 1091
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	666, 780
SfaNI	GCATC	5 cut(s)	517, 934, 1032, 1408, 1669
SfcI	CTRYAG	3 cut(s)	1086, 1728, 1854
Sfr274I	CTCGAG	1 cut(s)	1577
SinI	GGWCC	2 cut(s)	19, 64
SlaI	CTCGAG	1 cut(s)	1577
SmiMI	CAYNNNNRTG	2 cut(s)	476, 555
SmlI	CTYRAG	1 cut(s)	1577
SmoI	CTYRAG	1 cut(s)	1577
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	9 cut(s)	337, 653, 685, 801, 826, 831, 1076, 1362, 1688
SsiI	CCGC	6 cut(s)	17, 539, 872, 1415, 1421, 1625
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	3 cut(s)	50, 1430, 1569
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	766
StyI	CCWWGG	3 cut(s)	735, 1523, 1785
TaaI	ACNGT	2 cut(s)	137, 429
TaiI	ACGT	3 cut(s)	488, 537, 1746
TaqI	TCGA	7 cut(s)	7, 377, 728, 911, 1260, 1551, 1578
TasI	AATT	9 cut(s)	337, 653, 685, 801, 826, 831, 1076, 1362, 1688
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	5 cut(s)	4, 568, 1123, 1336, 1449
Tru1I	TTAA	8 cut(s)	389, 903, 1016, 1316, 1455, 1604, 1761, 1885
Tru9I	TTAA	8 cut(s)	389, 903, 1016, 1316, 1455, 1604, 1761, 1885
TscAI	CASTG	3 cut(s)	224, 270, 954
TseFI	GTSAC	2 cut(s)	97, 252
TseI	GCWGC	5 cut(s)	869, 1005, 1028, 1352, 1730
Tsp45I	GTSAC	2 cut(s)	97, 252
TspDTI	ATGAA	8 cut(s)	17, 467, 878, 975, 1173, 1374, 1441, 1622
TspRI	CASTG	3 cut(s)	224, 270, 954
Van91I	CCANNNNNTGG	2 cut(s)	219, 277
VpaK11BI	GGWCC	2 cut(s)	19, 64
XapI	RAATTY	2 cut(s)	1076, 1688
XbaI	TCTAGA	1 cut(s)	1429
XceI	RCATGY	1 cut(s)	1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1232
XhoI	CTCGAG	1 cut(s)	1577
XmiI	GTMKAC	1 cut(s)	1771
XspI	CTAG	3 cut(s)	50, 1430, 1569
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.