AT3G48760

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012726
Physical Location & Seq
Forward (+)
18075705 .. 18078363
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48760.1

Sequence Viewer

Length: 1431 bp
ATGTTAGATTTGCAGCCGTCAGATCGGCGTCATGGAGCTCCGAGTAGTAGCGGCGGTGTTAGTGGTGGTGATGAGCTGATCAGAACTTATAAAGGCTGGAAAGGCAATAACGTGTTCTTCCTTGGAGGAAGGCTCGTGTTTGGACCTGATGCTCGATCTATTCTCATCACCGTCTTCTTAATTACAGCTCCTGTCATTGTATTCTGTATTTTTGTTGGCAGAAAATTTATCGATGATTTTCCTCACCATAGAGGAGTATCAGTTTTAGCTGTTGCTGTTGGTCTGATTTTATTAGATCTAGTATTTCTTCTTCTAACCTCCGCGAGAGACCCAGGGATAATACCACGTAATCTGTATCCTCCTGAACCAGAGAGTAATGAAGGCAATGGAGAACCACGTCTTGCTCATACTCCTCAGAGTCGGTTGCCTCGGACAAAGGATATGATTGTAAATGGAATTACTGTCAAGATCAAATACTGTGACACATGCATGCTTTACAGACCGCCCCGTGCTTCTCATTGTTCGATTTGCAACAACTGCGTCGAGAAGTTTGATCACCACTGTCCTTGGCTTGGTCAGTGCATTGGATTGAGAAACTATAGGTTCTACTTCATGTTTGTGTTGTGCTCAACTCTTCTCTGCATTTATGTCCATGTGTTCTGCTGGATCTACGTCAAGCGGATAATGGATAGTGAGAACATAAACATCTGGAAATCGTTTCTCAAGACTCCTGCTTCCATTGCACTAATAATCTACACTTTCATTTGCGTCTGGTTTGTTGGTGGGCTTACCTGTTTCCACTTGTACCTAATGAGTACCAATCAGTCAACTTACGAAAACTTTAGGTATCGGTATGATAGACATGAGAACCCCTTCAACAAAGGAATAGTGGGGAACTTTATGGAAGTTTTCTGCACAAATGTTGCCGTATCTCAGAACAGTTTCAGAGAAAAGGTTTCAAAGGAGCCAGCAATACCACCAAGGACAGTAAATGGAGGGATGTCAAGCCCGAGCTTACAGAAAGTTTCCAACGACATAGAGATGGGGAGAAAACCAGTGTGGCACGAGACAGTAGAAGAAGAGCTCGGTGACATCGAAAAGGACATGGAAGCAGGGGTTGCATCACGGGATTTGAGCAGAATGCTTCCTCCAGAAGAATCTGAAGGACGAGGGATTATGCATTCAAGAGAGTCAAGCAGGGGACGCGGGATTATGCATTCAAGAGAGTCAAGCAGGGGAAGAAGAGGAGGGAGCTGGGAATTGTCAAGCCGTGTAAACGAAGATTTAAGAACCAGAGATGAGTCTGTGTCAAGAGTCGGTGAAGACAGCTCAGAGTCTTCAGACAATGATGCTTCAAGAGATTTACATGTTGAGATATATGATGCAGTAACAAGTAGAGGAAGAACCGGAACTGGTATAGGGCGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

476

Amino Acids

53.69

Weight (kDa)

8.15

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 156 - 282 9.6e-36 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48760
fragaria_vesca FvH4_5g08980 FvH4_5g08980
malus_domestica MD06G1135900.v1.1 MD14G1151100.v1.1
prunus_persica Prupe.5G146300_v2.0.a1
pyrus_communis pycom06g12710 pycom14g12550
rosa_chinensis RchiOBHm_Chr7g0189301
rosa_laevigata RLG00000004619
rosa_multiflora Rmu_sc0004318.1_g000015
rosa_roxburghii Rroxscaffold_3G00265540
rosa_rugosa Rorug06G0497000
rosa_samantha Rh7AG101900 Rh7BG104500 Rh7CG106000 Rh7DG103600
rosa_wichuraiana Rw7G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 90
AccII CGCG 2 cut(s) 323, 1206
AciI CCGC 7 cut(s) 51, 54, 321, 503, 679, 1206, 1423
AclWI GGATC 1 cut(s) 674
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 2 cut(s) 1182, 1323
AcyI GRCGYC 1 cut(s) 28
AfaI GTAC 2 cut(s) 806, 817
AfiI CCNNNNNNNGG 1 cut(s) 572
AflIII ACRYGT 2 cut(s) 111, 1366
AgsI TTSAA 5 cut(s) 877, 960, 1185, 1221, 1356
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 8 cut(s) 38, 76, 188, 269, 1014, 1084, 1254, 1329
AluI AGCT 8 cut(s) 38, 76, 188, 269, 1014, 1084, 1254, 1329
Alw21I GWGCWC 3 cut(s) 40, 629, 1086
Alw26I GTCTC 2 cut(s) 321, 1061
AlwI GGATC 1 cut(s) 674
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 1009
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 224
Asp700I GAANNNNTTC 2 cut(s) 872, 941
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 6 cut(s) 80, 160, 236, 548, 1100, 1331
AvaI CYCGRG 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 2 cut(s) 40, 1086
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BauI CACGAG 2 cut(s) 134, 1064
BbsI GAAGAC 3 cut(s) 166, 1329, 1329
Bbv12I GWGCWC 3 cut(s) 40, 629, 1086
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 1036
BceAI ACGGC 2 cut(s) 911, 1254
BciT130I CCWGG 1 cut(s) 333
BciVI GTATCC 1 cut(s) 366
BclI TGATCA 2 cut(s) 78, 553
BcoDI GTCTC 2 cut(s) 321, 1061
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 598
BfuI GTATCC 1 cut(s) 366
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 14, 52
BlsI GCNGC 2 cut(s) 15, 53
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 1009
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 966
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 4 cut(s) 139, 1130, 1339, 1372
BpiI GAAGAC 3 cut(s) 166, 1329, 1329
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 1 cut(s) 1134
BpuEI CTTGAG 1 cut(s) 707
Bsa29I ATCGAT 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 6 cut(s) 121, 331, 332, 428, 566, 980
BsaWI WCCGGW 1 cut(s) 1406
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 1055, 1417
Bse3DI GCAATG 2 cut(s) 391, 738
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 231
BseDI CCNNGG 6 cut(s) 121, 331, 332, 428, 566, 980
BseGI GGATG 1 cut(s) 1005
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMI GCAATG 2 cut(s) 391, 738
BseMII CTCAG 3 cut(s) 428, 947, 1344
BseNI ACTGG 2 cut(s) 1055, 1417
BseRI GAGGAG 3 cut(s) 267, 402, 1260
BseXI GCAGC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 1254
BsgI GTGCAG 1 cut(s) 898
Bsh1236I CGCG 2 cut(s) 323, 1206
BshVI ATCGAT 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 40, 629, 1086
BsiHKCI CYCGRG 1 cut(s) 1009
BsiSI CCGG 1 cut(s) 1407
BslFI GGGAC 1 cut(s) 1215
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 2 cut(s) 321, 1061
BsmFI GGGAC 1 cut(s) 1215
BsmI GAATGC 3 cut(s) 1146, 1180, 1216
Bso31I GGTCTC 1 cut(s) 321
BsoBI CYCGRG 1 cut(s) 1009
Bsp1286I GDGCHC 3 cut(s) 40, 629, 1086
Bsp143I GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
BspACI CCGC 7 cut(s) 51, 54, 321, 503, 679, 1206, 1423
BspCNI CTCAG 3 cut(s) 427, 946, 1343
BspDI ATCGAT 1 cut(s) 231
BspFNI CGCG 2 cut(s) 323, 1206
BspLI GGNNCC 1 cut(s) 966
BspPI GGATC 1 cut(s) 674
BspQI GCTCTTC 1 cut(s) 1074
BspTNI GGTCTC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 391, 738
BsrI ACTGG 2 cut(s) 1055, 1417
BssECI CCNNGG 6 cut(s) 121, 331, 332, 428, 566, 980
BssMI GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
BssNI GRCGYC 1 cut(s) 28
BssSI CACGAG 2 cut(s) 134, 1064
BssT1I CCWWGG 3 cut(s) 121, 566, 980
Bst2BI CACGAG 2 cut(s) 134, 1064
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 7 cut(s) 172, 463, 479, 563, 941, 988, 1072
Bst6I CTCTTC 3 cut(s) 639, 1074, 1237
BstACI GRCGYC 1 cut(s) 28
BstAPI GCANNNNNTGC 2 cut(s) 537, 1118
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 491, 969
BstDEI CTNAG 3 cut(s) 414, 933, 1330
BstF5I GGATG 1 cut(s) 1005
BstFNI CGCG 2 cut(s) 323, 1206
BstKTI GATC 7 cut(s) 25, 81, 158, 298, 471, 556, 669
BstMAI GTCTC 2 cut(s) 321, 1061
BstMBI GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
BstMWI GCNNNNNNNGC 5 cut(s) 102, 537, 740, 1118, 1203
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 3 cut(s) 489, 493, 1370
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 598
BstUI CGCG 2 cut(s) 323, 1206
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 3 cut(s) 166, 1329, 1329
BstX2I RGATCY 2 cut(s) 295, 666
BstYI RGATCY 2 cut(s) 295, 666
Bsu15I ATCGAT 1 cut(s) 231
BsuI GTATCC 1 cut(s) 366
BsuTUI ATCGAT 1 cut(s) 231
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 1005
BtsIMutI CAGTG 3 cut(s) 559, 584, 1062
Cac8I GCNNGC 2 cut(s) 491, 969
CaiI CAGNNNCTG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 1 cut(s) 231
CseI GACGC 4 cut(s) 17, 529, 757, 1212
Csp6I GTAC 2 cut(s) 805, 816
CspCI CAANNNNNGTGG 2 cut(s) 548, 583
CviAII CATG 8 cut(s) 32, 486, 490, 613, 653, 863, 1105, 1367
CviQI GTAC 2 cut(s) 805, 816
DdeI CTNAG 3 cut(s) 414, 933, 1330
DpnI GATC 7 cut(s) 24, 80, 157, 297, 470, 555, 668
DpnII GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
Eam1104I CTCTTC 3 cut(s) 639, 1074, 1237
EarI CTCTTC 3 cut(s) 639, 1074, 1237
Ecl136II GAGCTC 2 cut(s) 38, 1084
Eco130I CCWWGG 3 cut(s) 121, 566, 980
Eco24I GRGCYC 2 cut(s) 40, 1086
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 38, 1084
Eco57I CTGAAG 2 cut(s) 1182, 1323
Eco88I CYCGRG 1 cut(s) 1009
EcoICRI GAGCTC 2 cut(s) 38, 1084
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 3 cut(s) 121, 566, 980
EcoT22I ATGCAT 3 cut(s) 491, 1182, 1218
EcoT38I GRGCYC 2 cut(s) 40, 1086
ErhI CCWWGG 3 cut(s) 121, 566, 980
FaeI CATG 8 cut(s) 35, 489, 493, 616, 656, 866, 1108, 1370
FaqI GGGAC 1 cut(s) 1215
FatI CATG 8 cut(s) 31, 485, 489, 612, 652, 862, 1104, 1366
FauI CCCGC 1 cut(s) 1199
FbaI TGATCA 2 cut(s) 78, 553
Fnu4HI GCNGC 2 cut(s) 14, 52
FokI GGATG 1 cut(s) 1012
FriOI GRGCYC 2 cut(s) 40, 1086
Fsp4HI GCNGC 2 cut(s) 14, 52
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 14, 52
GsaI CCCAGC 1 cut(s) 1258
GsuI CTGGAG 1 cut(s) 1134
HapII CCGG 1 cut(s) 1407
HgaI GACGC 4 cut(s) 17, 529, 757, 1212
Hin1I GRCGYC 1 cut(s) 28
Hin1II CATG 8 cut(s) 35, 489, 493, 616, 656, 866, 1108, 1370
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HinfI GANTC 8 cut(s) 418, 727, 1157, 1190, 1226, 1301, 1314, 1334
HpaII CCGG 1 cut(s) 1407
HphI GGTGA 6 cut(s) 80, 160, 236, 548, 1100, 1331
Hpy166II GTNNAC 2 cut(s) 828, 1276
Hpy8I GTNNAC 2 cut(s) 828, 1276
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 4 cut(s) 123, 374, 883, 1157
HpyCH4III ACNGT 7 cut(s) 172, 463, 479, 563, 941, 988, 1072
HpyCH4IV ACGT 4 cut(s) 111, 346, 397, 672
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 537, 740, 1118, 1203
HpyF3I CTNAG 3 cut(s) 414, 933, 1330
HpySE526I ACGT 4 cut(s) 111, 346, 397, 672
Hsp92I GRCGYC 1 cut(s) 28
Hsp92II CATG 8 cut(s) 35, 489, 493, 616, 656, 866, 1108, 1370
Ksp22I TGATCA 2 cut(s) 78, 553
Kzo9I GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
LguI GCTCTTC 1 cut(s) 1074
LmnI GCTCC 5 cut(s) 35, 43, 193, 964, 1251
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 4 cut(s) 139, 1130, 1339, 1372
MaeI CTAG 1 cut(s) 299
MaeII ACGT 4 cut(s) 111, 346, 397, 672
MaeIII GTNAC 3 cut(s) 479, 1088, 1387
MalI GATC 7 cut(s) 24, 80, 157, 297, 470, 555, 668
MboI GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
MflI RGATCY 2 cut(s) 295, 666
MhlI GDGCHC 3 cut(s) 40, 629, 1086
MluCI AATT 4 cut(s) 180, 224, 456, 1259
MlyI GAGTC 7 cut(s) 427, 721, 1199, 1235, 1310, 1323, 1343
MmeI TCCRAC 1 cut(s) 1053
Mph1103I ATGCAT 3 cut(s) 491, 1182, 1218
MroXI GAANNNNTTC 2 cut(s) 872, 941
MseI TTAA 2 cut(s) 179, 1286
MslI CAYNNNNRTG 3 cut(s) 488, 617, 1040
MspI CCGG 1 cut(s) 1407
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 3 cut(s) 1146, 1180, 1216
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 2 cut(s) 323, 1206
MwoI GCNNNNNNNGC 5 cut(s) 102, 537, 740, 1118, 1203
NdeII GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
NlaIII CATG 8 cut(s) 35, 489, 493, 616, 656, 866, 1108, 1370
NlaIV GGNNCC 1 cut(s) 966
NmuCI GTSAC 2 cut(s) 479, 1088
NsiI ATGCAT 3 cut(s) 491, 1182, 1218
NspI RCATGY 3 cut(s) 489, 493, 1370
PaeI GCATGC 1 cut(s) 493
PasI CCCWGGG 1 cut(s) 332
PciI ACATGT 1 cut(s) 1366
PciSI GCTCTTC 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 1 cut(s) 1092
PctI GAATGC 3 cut(s) 1146, 1180, 1216
PdmI GAANNNNTTC 2 cut(s) 872, 941
PfeI GAWTC 1 cut(s) 1157
PkrI GCNGC 2 cut(s) 15, 53
PleI GAGTC 7 cut(s) 426, 721, 1198, 1234, 1309, 1322, 1342
PpsI GAGTC 7 cut(s) 426, 721, 1198, 1234, 1309, 1322, 1342
Ppu21I YACGTR 1 cut(s) 347
PscI ACATGT 1 cut(s) 1366
PsiI TTATAA 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 40, 1086
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 1254
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 966
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 295, 666
RsaI GTAC 2 cut(s) 806, 817
RsaNI GTAC 2 cut(s) 805, 816
RseI CAYNNNNRTG 3 cut(s) 488, 617, 1040
SacI GAGCTC 2 cut(s) 40, 1086
SapI GCTCTTC 1 cut(s) 1074
SaqAI TTAA 2 cut(s) 179, 1286
SatI GCNGC 2 cut(s) 14, 52
Sau3AI GATC 7 cut(s) 22, 78, 155, 295, 468, 553, 666
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 7 cut(s) 427, 721, 1199, 1235, 1310, 1323, 1343
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 3 cut(s) 40, 629, 1086
SfaNI GCATC 4 cut(s) 139, 1130, 1339, 1372
SfcI CTRYAG 1 cut(s) 598
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 3 cut(s) 488, 617, 1040
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 180, 224, 456, 1259
SsiI CCGC 7 cut(s) 51, 54, 321, 503, 679, 1206, 1423
SspMI CTAG 1 cut(s) 299
SstI GAGCTC 2 cut(s) 40, 1086
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 3 cut(s) 121, 566, 980
TaaI ACNGT 7 cut(s) 172, 463, 479, 563, 941, 988, 1072
TaiI ACGT 4 cut(s) 114, 349, 400, 675
TaqI TCGA 5 cut(s) 154, 231, 524, 543, 1095
TasI AATT 4 cut(s) 180, 224, 456, 1259
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 1157
Tru1I TTAA 2 cut(s) 179, 1286
Tru9I TTAA 2 cut(s) 179, 1286
TscAI CASTG 3 cut(s) 566, 584, 1062
TseFI GTSAC 2 cut(s) 479, 1088
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 479, 1088
TspDTI ATGAA 3 cut(s) 393, 601, 751
TspRI CASTG 3 cut(s) 566, 584, 1062
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 224
XceI RCATGY 3 cut(s) 489, 493, 1370
XmnI GAANNNNTTC 2 cut(s) 872, 941
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 3 cut(s) 491, 1182, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.