FvH4_5g08980

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012726
Physical Location & Seq
Forward (+)
5200238 .. 5203578
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08980.t2

Sequence Viewer

Length: 1332 bp
ATGCAATCGGAGCCACGTCAGCGGGGCTCGTCTGCCGGAGATGGGCCGGCGCTGGTTAGAAGTTACAAGGACTGGAAAGGCAGCAATATATTTCTTCTTGGTGGAAGGCTTATATTCGGACCGGATGCGAGATCTCTTGGGTTAACTGTATGCCTCATTGTTATTCCTGTTGCAGTTTTCTGTGGCTTTGTGGGGAGAAAACTCGTTGATCATTTGGGAATTTCAGTAATGATTGCCATTATTGTTCTGACGATATTTGTTTTGGTTCTCCTTCTAATAACCTCAGGCAGAGATCCTGGTATTGTACCTCGTAACCTTCACCCTCCAGAGCCAGACGACTATGATGGGAGTACAGACACCGGTTCCGGTGAAACACCACAGTCACGTTTTCCACGCATGAAGGAAGTGCTTATCAATCGTATAATTGTGAAGGTCAAGTATTGTGATACCTGCATGCTTTACAGACCTCCCCGTTGTTCTCACTGTTCCATATGCAATAACTGTGTGCAAAGATTTGATCATCACTGTCCTTGGGTTGGCCAGTGTATTGGATTGCGAAATTACAGGTTCTTCTTCATGTTTGTCTTCTCTGCAACTCTTCTTTGCATATATGTACATGGGTTTTGCTGGGTCTATGTCAAGATGATCATGAACAGCGAGGACATATCAATTTGGAAAGCACTGATTAAGACTCCTGCCTCCATTGCCCTCATAATCTACAGTTTCCTTGCTTCCTGGTTTGTTGGCGGCCTTACTAGCTTCCACTTATACCTCATCAGTACAAACCAGTCTACTTATGAAAACTTTAGATATCGGTATGATGGACGAGCCAACCCATTCAATAAAGGGGTAATTGAGAACTTCATGGAGGTATTCTGCACCAGCATTCCTCCATCTCAGAACAATTTCAGGGAAAAAGTTCCAATCAATCCTGCACAAGTTGGTAACAATTTTGACGGTCCTGTCATGGGGAAAGCCATTAGTGACATTGAAATGGGGAAAAAGCCAGGGTGGGATGAGACTGCCAGGGAGACAGGTGACTATGGAGGACAATTTAGCAATGATGATGGAGAAGGAAAGGACAATGGATTTAGCGAGGCAGATGTATCTCCGGATTTGAGCAGAACGCTTCCGACAGAGAGCACAGAGAGCCACAGCACAGCCTTGCATCCTAGCAGGCGTTCGAGTTGGGGAAGGAGAAGTGGAAGTTTAAATATATCACCTGAAGTTCTTGCTATGGCAGCAGGAGTTGGGGACTCCAGGCGAGTCAGTGATCGAATCAGTGGCAGCTTTACCTCAGAGTCCGGACAACAATCTCAGATGAGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

444

Amino Acids

49.1

Weight (kDa)

7.92

Isoelectric Point (pI)

41.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 14 - 138 2.5e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48760
fragaria_vesca FvH4_5g08980 FvH4_5g08980
malus_domestica MD06G1135900.v1.1 MD14G1151100.v1.1
prunus_persica Prupe.5G146300_v2.0.a1
pyrus_communis pycom06g12710 pycom14g12550
rosa_chinensis RchiOBHm_Chr7g0189301
rosa_laevigata RLG00000004619
rosa_multiflora Rmu_sc0004318.1_g000015
rosa_roxburghii Rroxscaffold_3G00265540
rosa_rugosa Rorug06G0497000
rosa_samantha Rh7AG101900 Rh7BG104500 Rh7CG106000 Rh7DG103600
rosa_wichuraiana Rw7G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 962
Acc36I ACCTGC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 791
AccIII TCCGGA 2 cut(s) 1111, 1304
AciI CCGC 2 cut(s) 22, 747
AclWI GGATC 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 1245
AfaI GTAC 4 cut(s) 306, 352, 615, 781
AfiI CCNNNNNNNGG 3 cut(s) 42, 536, 968
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 2 cut(s) 841, 992
AjiI CACGTC 1 cut(s) 17
AjnI CCWGG 5 cut(s) 295, 734, 1006, 1025, 1259
AluBI AGCT 2 cut(s) 759, 1290
AluI AGCT 2 cut(s) 759, 1290
Alw21I GWGCWC 1 cut(s) 1145
Alw26I GTCTC 2 cut(s) 1013, 1025
AlwI GGATC 1 cut(s) 287
Aor13HI TCCGGA 2 cut(s) 1111, 1304
AoxI GGCC 3 cut(s) 44, 538, 748
ApeKI GCWGC 3 cut(s) 81, 1241, 1287
ApoI RAATTY 1 cut(s) 219
AsiGI ACCGGT 1 cut(s) 359
Asp700I GAANNNNTTC 2 cut(s) 905, 918
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 44, 119, 959
AsuHPI GGTGA 4 cut(s) 311, 380, 1049, 1212
AvaII GGWCC 2 cut(s) 119, 959
AxyI CCTNAGG 1 cut(s) 283
BalI TGGCCA 1 cut(s) 540
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 1145
BbvI GCAGC 3 cut(s) 93, 1253, 1299
BccI CCATC 5 cut(s) 35, 338, 815, 901, 1061
BciT130I CCWGG 5 cut(s) 297, 736, 1008, 1027, 1261
BclI TGATCA 3 cut(s) 208, 517, 645
BcoDI GTCTC 2 cut(s) 1013, 1025
BfaI CTAG 2 cut(s) 756, 1173
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 458
BglII AGATCT 1 cut(s) 131
BisI GCNGC 4 cut(s) 82, 748, 1242, 1288
BlsI GCNGC 4 cut(s) 83, 749, 1243, 1289
Bme1390I CCNGG 5 cut(s) 297, 736, 1008, 1027, 1261
Bme18I GGWCC 2 cut(s) 119, 959
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 44, 119, 959
BmiI GGNNCC 2 cut(s) 12, 364
BmrFI CCNGG 5 cut(s) 297, 736, 1008, 1027, 1261
BmsI GCATC 2 cut(s) 115, 1177
BpiI GAAGAC 1 cut(s) 577
BpmI CTGGAG 2 cut(s) 309, 1243
BsaJI CCNNGG 3 cut(s) 530, 1007, 1026
BsaWI WCCGGW 5 cut(s) 121, 359, 365, 1111, 1304
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 536, 968
Bse118I RCCGGY 2 cut(s) 46, 359
Bse1I ACTGG 3 cut(s) 77, 541, 787
Bse21I CCTNAGG 1 cut(s) 283
Bse3DI GCAATG 2 cut(s) 702, 1066
BseAI TCCGGA 2 cut(s) 1111, 1304
BseBI CCWGG 5 cut(s) 297, 736, 1008, 1027, 1261
BseDI CCNNGG 3 cut(s) 530, 1007, 1026
BseGI GGATG 3 cut(s) 130, 1021, 1168
BseLI CCNNNNNNNGG 3 cut(s) 42, 536, 968
BseMI GCAATG 2 cut(s) 702, 1066
BseMII CTCAG 4 cut(s) 297, 911, 1311, 1331
BseNI ACTGG 3 cut(s) 77, 541, 787
BseXI GCAGC 3 cut(s) 93, 1253, 1299
BseYI CCCAGC 1 cut(s) 627
BsgI GTGCAG 2 cut(s) 862, 918
BshFI GGCC 3 cut(s) 46, 540, 750
BshTI ACCGGT 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 1145
BsiSI CCGG 7 cut(s) 36, 47, 122, 360, 366, 1112, 1305
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 3 cut(s) 42, 536, 968
BsmAI GTCTC 2 cut(s) 1013, 1025
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 3 cut(s) 46, 540, 750
Bsp1286I GDGCHC 2 cut(s) 29, 1145
Bsp13I TCCGGA 2 cut(s) 1111, 1304
Bsp1407I TGTACA 1 cut(s) 613
Bsp143I GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
BspACI CCGC 2 cut(s) 22, 747
BspANI GGCC 3 cut(s) 46, 540, 750
BspCNI CTCAG 4 cut(s) 296, 910, 1310, 1330
BspEI TCCGGA 2 cut(s) 1111, 1304
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 12, 364
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 702, 1066
BsrFI RCCGGY 2 cut(s) 46, 359
BsrGI TGTACA 1 cut(s) 613
BsrI ACTGG 3 cut(s) 77, 541, 787
BssAI RCCGGY 2 cut(s) 46, 359
BssECI CCNNGG 3 cut(s) 530, 1007, 1026
BssMI GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 5 cut(s) 297, 736, 1008, 1027, 1261
Bst4CI ACNGT 7 cut(s) 148, 381, 485, 503, 527, 722, 959
Bst6I CTCTTC 1 cut(s) 603
BstAUI TGTACA 1 cut(s) 613
BstC8I GCNNGC 3 cut(s) 48, 455, 1178
BstDEI CTNAG 4 cut(s) 283, 897, 1297, 1317
BstF5I GGATG 3 cut(s) 130, 1021, 1168
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 6 cut(s) 134, 211, 295, 520, 648, 1276
BstMAI GTCTC 2 cut(s) 1013, 1025
BstMBI GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
BstMWI GCNNNNNNNGC 6 cut(s) 10, 19, 704, 756, 1149, 1241
BstNI CCWGG 5 cut(s) 297, 736, 1008, 1027, 1261
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 5 cut(s) 295, 734, 1006, 1025, 1259
BstSFI CTRYAG 1 cut(s) 718
BstV1I GCAGC 3 cut(s) 93, 1253, 1299
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 2 cut(s) 131, 292
BstXI CCANNNNNNTGG 1 cut(s) 548
BstYI RGATCY 2 cut(s) 131, 292
Bsu36I CCTNAGG 1 cut(s) 283
BsuRI GGCC 3 cut(s) 46, 540, 750
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 130, 1021, 1168
BtsIMutI CAGTG 6 cut(s) 481, 523, 548, 680, 1276, 1288
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 3 cut(s) 48, 455, 1178
CciI TCATGA 1 cut(s) 648
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 2 cut(s) 46, 359
Cfr13I GGNCC 3 cut(s) 44, 119, 959
CpoI CGGWCCG 1 cut(s) 119
Csp6I GTAC 4 cut(s) 305, 351, 614, 780
CspAI ACCGGT 1 cut(s) 359
CspI CGGWCCG 1 cut(s) 119
CviAII CATG 7 cut(s) 397, 454, 577, 617, 649, 865, 967
CviQI GTAC 4 cut(s) 305, 351, 614, 780
DdeI CTNAG 4 cut(s) 283, 897, 1297, 1317
DpnI GATC 6 cut(s) 133, 210, 294, 519, 647, 1275
DpnII GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
DraI TTTAAA 1 cut(s) 1212
DrdI GACNNNNNNGTC 1 cut(s) 962
DseDI GACNNNNNNGTC 1 cut(s) 962
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 530
Eco24I GRGCYC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 2 cut(s) 119, 959
Eco57I CTGAAG 1 cut(s) 1245
Eco81I CCTNAGG 1 cut(s) 283
EcoRII CCWGG 5 cut(s) 295, 734, 1006, 1025, 1259
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 530
EcoT38I GRGCYC 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 7 cut(s) 400, 457, 580, 620, 652, 868, 970
FaqI GGGAC 1 cut(s) 1268
FatI CATG 7 cut(s) 396, 453, 576, 616, 648, 864, 966
FauI CCCGC 1 cut(s) 15
FauNDI CATATG 1 cut(s) 491
FbaI TGATCA 3 cut(s) 208, 517, 645
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 4 cut(s) 82, 748, 1242, 1288
FokI GGATG 3 cut(s) 137, 1028, 1155
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 4 cut(s) 82, 748, 1242, 1288
FspBI CTAG 2 cut(s) 756, 1173
GlaI GCGC 1 cut(s) 51
GluI GCNGC 4 cut(s) 82, 748, 1242, 1288
GsaI CCCAGC 1 cut(s) 631
GsuI CTGGAG 2 cut(s) 309, 1243
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 3 cut(s) 46, 540, 750
HapII CCGG 7 cut(s) 36, 47, 122, 360, 366, 1112, 1305
HhaI GCGC 1 cut(s) 52
Hin1II CATG 7 cut(s) 400, 457, 580, 620, 652, 868, 970
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 5 cut(s) 691, 1256, 1266, 1278, 1301
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 7 cut(s) 36, 47, 122, 360, 366, 1112, 1305
HphI GGTGA 4 cut(s) 311, 380, 1049, 1212
Hpy166II GTNNAC 2 cut(s) 144, 792
Hpy188I TCNGA 7 cut(s) 10, 119, 249, 900, 1134, 1300, 1320
Hpy188III TCNNGA 5 cut(s) 326, 640, 649, 1112, 1305
Hpy8I GTNNAC 2 cut(s) 144, 792
HpyAV CCTTC 7 cut(s) 99, 281, 326, 394, 424, 1067, 1188
HpyCH4III ACNGT 7 cut(s) 148, 381, 485, 503, 527, 722, 959
HpyCH4IV ACGT 2 cut(s) 16, 385
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 19, 704, 756, 1149, 1241
HpyF3I CTNAG 4 cut(s) 283, 897, 1297, 1317
HpySE526I ACGT 2 cut(s) 16, 385
Hsp92II CATG 7 cut(s) 400, 457, 580, 620, 652, 868, 970
HspAI GCGC 1 cut(s) 50
Kpn2I TCCGGA 2 cut(s) 1111, 1304
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Ksp22I TGATCA 3 cut(s) 208, 517, 645
KspAI GTTAAC 1 cut(s) 144
Kzo9I GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 93, 1253, 1299
LweI GCATC 2 cut(s) 115, 1177
MaeI CTAG 2 cut(s) 756, 1173
MaeII ACGT 2 cut(s) 16, 385
MaeIII GTNAC 6 cut(s) 62, 311, 381, 944, 983, 1037
MalI GATC 6 cut(s) 133, 210, 294, 519, 647, 1275
MboI GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
MboII GAAGA 5 cut(s) 86, 562, 565, 577, 590
MflI RGATCY 2 cut(s) 131, 292
MhlI GDGCHC 2 cut(s) 29, 1145
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 8 cut(s) 219, 423, 559, 669, 852, 904, 949, 1052
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 4 cut(s) 685, 1250, 1275, 1310
MmeI TCCRAC 1 cut(s) 1157
Mox20I TGGCCA 1 cut(s) 540
MroI TCCGGA 2 cut(s) 1111, 1304
MroNI GCCGGC 1 cut(s) 46
MroXI GAANNNNTTC 2 cut(s) 905, 918
MscI TGGCCA 1 cut(s) 540
MseI TTAA 3 cut(s) 143, 687, 1211
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 1 cut(s) 540
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 7 cut(s) 36, 47, 122, 360, 366, 1112, 1305
MspR9I CCNGG 5 cut(s) 297, 736, 1008, 1027, 1261
Mva1269I GAATGC 1 cut(s) 885
MvaI CCWGG 5 cut(s) 297, 736, 1008, 1027, 1261
MwoI GCNNNNNNNGC 6 cut(s) 10, 19, 704, 756, 1149, 1241
NaeI GCCGGC 1 cut(s) 48
NdeI CATATG 1 cut(s) 491
NdeII GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 7 cut(s) 400, 457, 580, 620, 652, 868, 970
NlaIV GGNNCC 2 cut(s) 12, 364
NmuCI GTSAC 3 cut(s) 381, 983, 1037
NspI RCATGY 1 cut(s) 457
PaeI GCATGC 1 cut(s) 457
PagI TCATGA 1 cut(s) 648
PctI GAATGC 1 cut(s) 885
PdiI GCCGGC 1 cut(s) 48
PdmI GAANNNNTTC 2 cut(s) 905, 918
PfeI GAWTC 1 cut(s) 1278
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 4 cut(s) 83, 749, 1243, 1289
PleI GAGTC 4 cut(s) 685, 1250, 1274, 1309
PpsI GAGTC 4 cut(s) 685, 1250, 1274, 1309
Psp6I CCWGG 5 cut(s) 295, 734, 1006, 1025, 1259
PspFI CCCAGC 1 cut(s) 627
PspGI CCWGG 5 cut(s) 295, 734, 1006, 1025, 1259
PspN4I GGNNCC 2 cut(s) 12, 364
PspPI GGNCC 3 cut(s) 44, 119, 959
PsuI RGATCY 2 cut(s) 131, 292
RsaI GTAC 4 cut(s) 306, 352, 615, 781
RsaNI GTAC 4 cut(s) 305, 351, 614, 780
RseI CAYNNNNRTG 1 cut(s) 992
Rsr2I CGGWCCG 1 cut(s) 119
RsrII CGGWCCG 1 cut(s) 119
SaqAI TTAA 3 cut(s) 143, 687, 1211
SatI GCNGC 4 cut(s) 82, 748, 1242, 1288
Sau3AI GATC 6 cut(s) 131, 208, 292, 517, 645, 1273
Sau96I GGNCC 3 cut(s) 44, 119, 959
SchI GAGTC 4 cut(s) 685, 1250, 1275, 1310
ScrFI CCNGG 5 cut(s) 297, 736, 1008, 1027, 1261
SduI GDGCHC 2 cut(s) 29, 1145
SfaNI GCATC 2 cut(s) 115, 1177
SfcI CTRYAG 1 cut(s) 718
SinI GGWCC 2 cut(s) 119, 959
SmiMI CAYNNNNRTG 1 cut(s) 992
SphI GCATGC 1 cut(s) 457
Sse9I AATT 8 cut(s) 219, 423, 559, 669, 852, 904, 949, 1052
SsiI CCGC 2 cut(s) 22, 747
SspMI CTAG 2 cut(s) 756, 1173
StyD4I CCNGG 5 cut(s) 295, 734, 1006, 1025, 1259
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 7 cut(s) 148, 381, 485, 503, 527, 722, 959
TaiI ACGT 2 cut(s) 19, 388
TaqI TCGA 2 cut(s) 1184, 1276
TasI AATT 8 cut(s) 219, 423, 559, 669, 852, 904, 949, 1052
TatI WGTACW 3 cut(s) 350, 613, 779
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 1 cut(s) 1278
Tru1I TTAA 3 cut(s) 143, 687, 1211
Tru9I TTAA 3 cut(s) 143, 687, 1211
TscAI CASTG 6 cut(s) 488, 530, 548, 687, 1276, 1288
TseFI GTSAC 3 cut(s) 381, 983, 1037
TseI GCWGC 3 cut(s) 81, 1241, 1287
Tsp45I GTSAC 3 cut(s) 381, 983, 1037
TspDTI ATGAA 5 cut(s) 413, 565, 665, 813, 853
TspRI CASTG 6 cut(s) 488, 530, 548, 687, 1276, 1288
VpaK11BI GGWCC 2 cut(s) 119, 959
XapI RAATTY 1 cut(s) 219
XceI RCATGY 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 791
XmnI GAANNNNTTC 2 cut(s) 905, 918
XspI CTAG 2 cut(s) 756, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.