Rh7AG101900

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012726
Physical Location & Seq
Reverse (-)
7931719 .. 7936805
5087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG101900.1

Sequence Viewer

Length: 948 bp
ATGAAGGAAGTGCTTATCAATCGTATAATTGTGAAGGTCAAGTACTGTGATACCTGCATGCTTTACAGACCTCCCCGTTGTTCTCACTGTTCCATATGCAATAACTGTGTGCAAAGATTTGATCATCACTGTCCTTGGGTTGGTCAGTGTATTGGATTGCGAAATTACAGGTTCTTCTTCATGTTTGTCTTCTCTGCAACTCTTCTTTGCATATATGTACATGGGTTTTGCTGGGTCTATGTCAAGATGATCATGAACAGCGAGGACATATCAATTTGGAAAGCACTGATTAAGACTCCTGCCTCCATTGCACTCATAATTTACAGTTTCCTTGCTTCCTGGTTTGTCGGCGGCCTTACTAGCTTCCACTTATATCTCATCAGTACAAACCAGTCTACATATGAAAATTTTAGATACCGATATGATGGACGAGCCAACCCATTCAATAAAGGGGTAATTGAGAACTTCATGGAGGTATTCTGCACCAGCATTCCTCCATCTCAGAACAATTTCAGGGAAAAAGTTCCAATCAATCGTGCAATTTCACTTGCACAAGTTGGTACCAATTTTGACGGTCCTGTCATGGGGAAAGCCATCAGTGACATTGAAATGGGGAAGAAGCCAGGCTGGGATGAGGCTGCCAGGGAAACAGGTGACTACGGAGGACAGTTTAGCAATGATGATGGAGACGGCAAGGACAATGGATTTAGCGAGGCAGATGTATCTCCAGATTTAAGCAGAACGCTTCCGACCGAGAGCACAGAGAGCCACAGTGCAGCCTTGCATCCTAGCAGGCGTTCAAGTTGGGGAAGGAGAAGTGGAAGTTTAAATATATCACCAGAAGTTCTTGCTATGGCAGCGGGAGTTGGGGACTCGAGGCGAGTCAGTGATCGAATCAGTGGCAACTTTACTGCAGAGACTGGACAACAATTTCAGATTAATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

315

Amino Acids

35.4

Weight (kDa)

7.98

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 14 - 138 2.5e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48760
fragaria_vesca FvH4_5g08980 FvH4_5g08980
malus_domestica MD06G1135900.v1.1 MD14G1151100.v1.1
prunus_persica Prupe.5G146300_v2.0.a1
pyrus_communis pycom06g12710 pycom14g12550
rosa_chinensis RchiOBHm_Chr7g0189301
rosa_laevigata RLG00000004619
rosa_multiflora Rmu_sc0004318.1_g000015
rosa_roxburghii Rroxscaffold_3G00265540
rosa_rugosa Rorug06G0497000
rosa_samantha Rh7AG101900 Rh7BG104500 Rh7CG106000 Rh7DG103600
rosa_wichuraiana Rw7G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 560
AccI GTMKAC 1 cut(s) 395
AciI CCGC 2 cut(s) 351, 860
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 4 cut(s) 44, 219, 385, 562
AfiI CCNNNNNNNGG 2 cut(s) 140, 584
AgsI TTSAA 3 cut(s) 445, 608, 801
AjnI CCWGG 3 cut(s) 338, 622, 641
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 2 cut(s) 681, 911
AlwNI CAGNNNCTG 1 cut(s) 920
Ama87I CYCGRG 1 cut(s) 874
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 638, 776, 857
ApoI RAATTY 1 cut(s) 406
AseI ATTAAT 1 cut(s) 939
Asp700I GAANNNNTTC 2 cut(s) 509, 522
Asp718I GGTACC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 665, 828
AvaI CYCGRG 1 cut(s) 874
AvaII GGWCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 761
BbvI GCAGC 3 cut(s) 625, 788, 869
BccI CCATC 4 cut(s) 419, 505, 602, 677
BceAI ACGGC 1 cut(s) 706
BciT130I CCWGG 3 cut(s) 340, 624, 643
BclI TGATCA 2 cut(s) 121, 249
BcoDI GTCTC 2 cut(s) 681, 911
BfaI CTAG 2 cut(s) 360, 789
BfmI CTRYAG 1 cut(s) 912
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 4 cut(s) 352, 639, 777, 858
BlsI GCNGC 4 cut(s) 353, 640, 778, 859
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 3 cut(s) 340, 624, 643
Bme18I GGWCC 1 cut(s) 575
BmeT110I CYCGRG 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 3 cut(s) 340, 624, 643
BmsI GCATC 1 cut(s) 793
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 134, 642
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 584
Bse1I ACTGG 2 cut(s) 391, 925
Bse3DI GCAATG 2 cut(s) 306, 682
BseBI CCWGG 3 cut(s) 340, 624, 643
BseDI CCNNGG 2 cut(s) 134, 642
BseGI GGATG 2 cut(s) 637, 784
BseLI CCNNNNNNNGG 2 cut(s) 140, 584
BseMI GCAATG 2 cut(s) 306, 682
BseMII CTCAG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 391, 925
BseXI GCAGC 3 cut(s) 625, 788, 869
BseYI CCCAGC 2 cut(s) 231, 627
BsgI GTGCAG 2 cut(s) 466, 795
Bsh1285I CGRYCG 1 cut(s) 753
BshFI GGCC 1 cut(s) 354
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 753
BsiHKAI GWGCWC 1 cut(s) 761
BsiHKCI CYCGRG 1 cut(s) 874
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 2 cut(s) 140, 584
BsmAI GTCTC 2 cut(s) 681, 911
BsmBI CGTCTC 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 884
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 874
Bsp1286I GDGCHC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 121, 249, 889
BspACI CCGC 2 cut(s) 351, 860
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 514
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 562
BspMAI CTGCAG 1 cut(s) 916
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 560
BsrDI GCAATG 2 cut(s) 306, 682
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 2 cut(s) 391, 925
BssECI CCNNGG 2 cut(s) 134, 642
BssMI GATC 3 cut(s) 121, 249, 889
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 3 cut(s) 340, 624, 643
Bst4CI ACNGT 8 cut(s) 47, 89, 107, 131, 326, 575, 669, 773
Bst6I CTCTTC 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 59, 794
BstDEI CTNAG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 637, 784
BstKTI GATC 3 cut(s) 124, 252, 892
BstMAI GTCTC 2 cut(s) 681, 911
BstMBI GATC 3 cut(s) 121, 249, 889
BstMCI CGRYCG 1 cut(s) 753
BstMWI GCNNNNNNNGC 4 cut(s) 308, 360, 765, 857
BstNI CCWGG 3 cut(s) 340, 624, 643
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 3 cut(s) 338, 622, 641
BstSFI CTRYAG 1 cut(s) 912
BstV1I GCAGC 3 cut(s) 625, 788, 869
BstV2I GAAGAC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 637, 784
BtsIMutI CAGTG 8 cut(s) 85, 127, 152, 284, 604, 778, 892, 904
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 59, 794
CaiI CAGNNNCTG 1 cut(s) 920
CciI TCATGA 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 4 cut(s) 43, 218, 384, 561
CviAII CATG 6 cut(s) 58, 181, 221, 253, 469, 583
CviJI RGCY 9 cut(s) 354, 363, 434, 593, 622, 627, 638, 768, 779
CviKI_1 RGCY 9 cut(s) 354, 363, 434, 593, 622, 627, 638, 768, 779
CviQI GTAC 4 cut(s) 43, 218, 384, 561
DdeI CTNAG 1 cut(s) 501
DpnI GATC 3 cut(s) 123, 251, 891
DpnII GATC 3 cut(s) 121, 249, 889
DraI TTTAAA 1 cut(s) 828
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 874
EcoRII CCWGG 3 cut(s) 338, 622, 641
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 681
FaeI CATG 6 cut(s) 61, 184, 224, 256, 472, 586
FaqI GGGAC 1 cut(s) 884
FatI CATG 6 cut(s) 57, 180, 220, 252, 468, 582
FauI CCCGC 1 cut(s) 853
FauNDI CATATG 2 cut(s) 95, 400
FbaI TGATCA 2 cut(s) 121, 249
FblI GTMKAC 1 cut(s) 395
Fnu4HI GCNGC 4 cut(s) 352, 639, 777, 858
FokI GGATG 2 cut(s) 644, 771
Fsp4HI GCNGC 4 cut(s) 352, 639, 777, 858
FspBI CTAG 2 cut(s) 360, 789
GluI GCNGC 4 cut(s) 352, 639, 777, 858
GsaI CCCAGC 2 cut(s) 235, 631
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 354
Hin1II CATG 6 cut(s) 61, 184, 224, 256, 472, 586
HinfI GANTC 4 cut(s) 295, 872, 882, 894
HphI GGTGA 2 cut(s) 665, 828
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 3 cut(s) 504, 750, 936
Hpy188III TCNNGA 3 cut(s) 244, 253, 728
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 28, 804
HpyCH4III ACNGT 8 cut(s) 47, 89, 107, 131, 326, 575, 669, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 360, 765, 857
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 6 cut(s) 61, 184, 224, 256, 472, 586
KpnI GGTACC 1 cut(s) 564
Ksp22I TGATCA 2 cut(s) 121, 249
Kzo9I GATC 3 cut(s) 121, 249, 889
Lsp1109I GCAGC 3 cut(s) 625, 788, 869
LweI GCATC 1 cut(s) 793
MaeI CTAG 2 cut(s) 360, 789
MaeIII GTNAC 2 cut(s) 599, 653
MalI GATC 3 cut(s) 123, 251, 891
MboI GATC 3 cut(s) 121, 249, 889
MboII GAAGA 5 cut(s) 166, 169, 181, 194, 628
MhlI GDGCHC 1 cut(s) 761
MlyI GAGTC 3 cut(s) 289, 866, 891
MmeI TCCRAC 1 cut(s) 773
MnlI CCTC 9 cut(s) 81, 256, 313, 466, 504, 628, 656, 706, 870
MroXI GAANNNNTTC 2 cut(s) 509, 522
MseI TTAA 5 cut(s) 291, 734, 827, 939, 946
MslI CAYNNNNRTG 1 cut(s) 608
MspA1I CMGCKG 1 cut(s) 860
MspR9I CCNGG 3 cut(s) 340, 624, 643
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 3 cut(s) 340, 624, 643
MwoI GCNNNNNNNGC 4 cut(s) 308, 360, 765, 857
NdeI CATATG 2 cut(s) 95, 400
NdeII GATC 3 cut(s) 121, 249, 889
NlaIII CATG 6 cut(s) 61, 184, 224, 256, 472, 586
NlaIV GGNNCC 1 cut(s) 562
NmuCI GTSAC 2 cut(s) 599, 653
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PaeR7I CTCGAG 1 cut(s) 874
PagI TCATGA 1 cut(s) 252
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 509, 522
PfeI GAWTC 1 cut(s) 894
PkrI GCNGC 4 cut(s) 353, 640, 778, 859
PleI GAGTC 3 cut(s) 289, 866, 890
PpsI GAGTC 3 cut(s) 289, 866, 890
PshBI ATTAAT 1 cut(s) 939
Psp6I CCWGG 3 cut(s) 338, 622, 641
PspFI CCCAGC 2 cut(s) 231, 627
PspGI CCWGG 3 cut(s) 338, 622, 641
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 1 cut(s) 575
PspXI VCTCGAGB 1 cut(s) 874
PstI CTGCAG 1 cut(s) 916
PstNI CAGNNNCTG 1 cut(s) 920
RsaI GTAC 4 cut(s) 44, 219, 385, 562
RsaNI GTAC 4 cut(s) 43, 218, 384, 561
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 5 cut(s) 291, 734, 827, 939, 946
SatI GCNGC 4 cut(s) 352, 639, 777, 858
Sau3AI GATC 3 cut(s) 121, 249, 889
Sau96I GGNCC 1 cut(s) 575
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 3 cut(s) 289, 866, 891
ScrFI CCNGG 3 cut(s) 340, 624, 643
SduI GDGCHC 1 cut(s) 761
SetI ASST 7 cut(s) 39, 56, 73, 173, 365, 477, 655
SfaNI GCATC 1 cut(s) 793
SfcI CTRYAG 1 cut(s) 912
Sfr274I CTCGAG 1 cut(s) 874
SinI GGWCC 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 874
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 874
SmoI CTYRAG 1 cut(s) 874
SphI GCATGC 1 cut(s) 61
SsiI CCGC 2 cut(s) 351, 860
SspMI CTAG 2 cut(s) 360, 789
StyD4I CCNGG 3 cut(s) 338, 622, 641
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 8 cut(s) 47, 89, 107, 131, 326, 575, 669, 773
TaqI TCGA 2 cut(s) 875, 892
TaqII GACCGA 1 cut(s) 767
TatI WGTACW 3 cut(s) 42, 217, 383
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 894
Tru1I TTAA 5 cut(s) 291, 734, 827, 939, 946
Tru9I TTAA 5 cut(s) 291, 734, 827, 939, 946
TscAI CASTG 8 cut(s) 92, 134, 152, 291, 604, 778, 892, 904
TseFI GTSAC 2 cut(s) 599, 653
TseI GCWGC 3 cut(s) 638, 776, 857
Tsp45I GTSAC 2 cut(s) 599, 653
TspDTI ATGAA 5 cut(s) 17, 169, 269, 417, 457
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 8 cut(s) 92, 134, 152, 291, 604, 778, 892, 904
VpaK11BI GGWCC 1 cut(s) 575
VspI ATTAAT 1 cut(s) 939
XapI RAATTY 1 cut(s) 406
XceI RCATGY 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 874
XmiI GTMKAC 1 cut(s) 395
XmnI GAANNNNTTC 2 cut(s) 509, 522
XspI CTAG 2 cut(s) 360, 789
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.