Rorug06G0497000

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012726
Physical Location & Seq
Forward (+)
61341189 .. 61342686
1498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0497000.1

Sequence Viewer

Length: 834 bp
ATGAAGAGCCCCCAGACTTGTTCTTCTTGCAGACACAACAGAATCAAATGCGATCCAGATTGTTGGCTGGCCCCGTACTTCCCTGCCCATGTGCACCAGAAATACAAGAAAGCCCAGCAGGTGTTCGGCAAAAGTTACATGACCAAGTTGCTCAAGAGCCTCCACCAGACCCCTCACAAAAGAAGCACTGCCATGAAGAACATCAGAGCCGAAGCCGATATCCGCAGCGCCGACCCGGTCGGCGGTTGTTATGGTGTTGTCAAGGAGCAATGTGCTGTTATAAGGAGACTGGAGAGGAAGATTGCAGAGCAAGAGGAGGAGCTCCGCCGCTTGCGCAGTCAACTTGGTGGTGGAGGAGGAGGAGGAGGGTCTGTTAATGTGGCTATGGCACAACCACCTTTGGCCACCGCCATGTATCAAGAACAGGGCTACAACACTTTTCAGCAGAATCTTGAAGAACAGAATTACAATGCAAGTCAAGGATATGATCAAGAACAGGGCAACTTTGCTCAAGGATTTCCTCATGTTCATCAAGAAGAGGGCAACATTGTTCAAGGATATCGAATTCGACAAGAACAGACTAACATTGATGCTCAGAGTCAAGGATATGTTCAGGCACCCACTCATCATCAACAGCTTCTTCCAGAGCCTAATCAAGAACAGGGCGACATTTTTGATTTCAGGGATGAAGTTGTTGTACTTGTGCCAGAACATGATGGTCTCGAGCCTCAACCCTCGACCCAATTCAGGCCGCCAGGGCATGTTGGAGTTCGTGTTCTCCTATTAGAACCAGGAGAAGGGTCTATTTCTTATCTTTCTCATGACAATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

277

Amino Acids

31.1

Weight (kDa)

6.31

Isoelectric Point (pI)

66.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 104 2.7e-24 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012726)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48760
fragaria_vesca FvH4_5g08980 FvH4_5g08980
malus_domestica MD06G1135900.v1.1 MD14G1151100.v1.1
prunus_persica Prupe.5G146300_v2.0.a1
pyrus_communis pycom06g12710 pycom14g12550
rosa_chinensis RchiOBHm_Chr7g0189301
rosa_laevigata RLG00000004619
rosa_multiflora Rmu_sc0004318.1_g000015
rosa_roxburghii Rroxscaffold_3G00265540
rosa_rugosa Rorug06G0497000
rosa_samantha Rh7AG101900 Rh7BG104500 Rh7CG106000 Rh7DG103600
rosa_wichuraiana Rw7G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AarI CACCTGC 1 cut(s) 109
Acc16I TGCGCA 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 6 cut(s) 223, 243, 325, 328, 408, 752
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 564
AfaI GTAC 2 cut(s) 77, 699
AfiI CCNNNNNNNGG 3 cut(s) 242, 747, 797
AgsI TTSAA 2 cut(s) 455, 554
AjnI CCWGG 2 cut(s) 754, 790
AloI GAACNNNNNNTCC 2 cut(s) 759, 791
AluBI AGCT 2 cut(s) 322, 637
AluI AGCT 2 cut(s) 322, 637
Alw21I GWGCWC 2 cut(s) 96, 324
Alw26I GTCTC 2 cut(s) 280, 725
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 3 cut(s) 69, 402, 749
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 564
AspLEI GCGC 2 cut(s) 230, 336
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 236
AvaI CYCGRG 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 404
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 2 cut(s) 11, 324
BarI GAAGNNNNNNTAC 2 cut(s) 681, 713
Bbv12I GWGCWC 2 cut(s) 96, 324
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 710
BciT130I CCWGG 2 cut(s) 756, 792
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 280, 725
BfaI CTAG 1 cut(s) 832
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 109
BglI GCCNNNNNGGC 1 cut(s) 757
BisI GCNGC 3 cut(s) 226, 328, 752
BlsI GCNGC 3 cut(s) 227, 329, 753
Bme1390I CCNGG 3 cut(s) 236, 756, 792
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 72, 618
BmrFI CCNGG 3 cut(s) 236, 756, 792
BmsI GCATC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 137, 495
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 1 cut(s) 755
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 747, 797
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 2 cut(s) 756, 792
BseDI CCNNGG 1 cut(s) 755
BseGI GGATG 1 cut(s) 691
BseLI CCNNNNNNNGG 3 cut(s) 242, 747, 797
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 6 cut(s) 329, 332, 369, 372, 375, 378
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 237
BseYI CCCAGC 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 71, 404, 751
BshNI GGYRCC 1 cut(s) 616
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 2 cut(s) 96, 324
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 242, 747, 797
BsmAI GTCTC 2 cut(s) 280, 725
BsnI GGCC 3 cut(s) 71, 404, 751
Bso31I GGTCTC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 722
Bsp1286I GDGCHC 3 cut(s) 11, 96, 324
Bsp143I GATC 2 cut(s) 52, 487
BspACI CCGC 6 cut(s) 223, 243, 325, 328, 408, 752
BspANI GGCC 3 cut(s) 71, 404, 751
BspCNI CTCAG 1 cut(s) 607
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 2 cut(s) 72, 618
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 725
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 755
BssMI GATC 2 cut(s) 52, 487
Bst2UI CCWGG 2 cut(s) 756, 792
Bst6I CTCTTC 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 69, 332
BstDEI CTNAG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 691
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 336
BstKTI GATC 2 cut(s) 55, 490
BstMAI GTCTC 2 cut(s) 280, 725
BstMBI GATC 2 cut(s) 52, 487
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 333, 757
BstNI CCWGG 2 cut(s) 756, 792
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 3 cut(s) 234, 754, 790
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 71, 404, 751
BtsCI GGATG 1 cut(s) 691
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 69, 332
CciI TCATGA 1 cut(s) 820
CfoI GCGC 2 cut(s) 230, 336
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 76, 698
CviAII CATG 8 cut(s) 89, 139, 193, 412, 524, 713, 761, 821
CviQI GTAC 2 cut(s) 76, 698
DdeI CTNAG 1 cut(s) 594
DpnI GATC 2 cut(s) 54, 489
DpnII GATC 2 cut(s) 52, 487
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 11, 324
Eco31I GGTCTC 1 cut(s) 725
Eco32I GATATC 2 cut(s) 220, 560
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 754, 790
EcoRV GATATC 2 cut(s) 220, 560
EcoT38I GRGCYC 2 cut(s) 11, 324
FaeI CATG 8 cut(s) 92, 142, 196, 415, 527, 716, 764, 824
FatI CATG 8 cut(s) 88, 138, 192, 411, 523, 712, 760, 820
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 226, 328, 752
FokI GGATG 1 cut(s) 698
FriOI GRGCYC 2 cut(s) 11, 324
Fsp4HI GCNGC 3 cut(s) 226, 328, 752
FspBI CTAG 1 cut(s) 832
FspI TGCGCA 1 cut(s) 335
GlaI GCGC 2 cut(s) 229, 335
GluI GCNGC 3 cut(s) 226, 328, 752
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 71, 404, 751
HapII CCGG 1 cut(s) 236
HhaI GCGC 2 cut(s) 230, 336
Hin1II CATG 8 cut(s) 92, 142, 196, 415, 527, 716, 764, 824
Hin6I GCGC 2 cut(s) 228, 334
HinP1I GCGC 2 cut(s) 228, 334
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 3 cut(s) 42, 448, 598
HpaII CCGG 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 94, 341
Hpy188I TCNGA 2 cut(s) 206, 597
Hpy8I GTNNAC 2 cut(s) 94, 341
HpyAV CCTTC 1 cut(s) 791
HpyCH4V TGCA 4 cut(s) 30, 94, 305, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 757
HpyF3I CTNAG 1 cut(s) 594
Hsp92II CATG 8 cut(s) 92, 142, 196, 415, 527, 716, 764, 824
HspAI GCGC 2 cut(s) 228, 334
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 52, 487
LmnI GCTCC 3 cut(s) 265, 319, 327
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 832
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 54, 489
MboI GATC 2 cut(s) 52, 487
MboII GAAGA 7 cut(s) 15, 16, 208, 310, 467, 548, 632
MhlI GDGCHC 3 cut(s) 11, 96, 324
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 3 cut(s) 463, 564, 743
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 1 cut(s) 607
MmeI TCCRAC 1 cut(s) 745
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 3 cut(s) 191, 410, 825
Msp20I TGGCCA 1 cut(s) 404
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 236, 756, 792
MvaI CCWGG 2 cut(s) 756, 792
MwoI GCNNNNNNNGC 2 cut(s) 333, 757
NciI CCSGG 1 cut(s) 236
NdeII GATC 2 cut(s) 52, 487
NlaIII CATG 8 cut(s) 92, 142, 196, 415, 527, 716, 764, 824
NlaIV GGNNCC 2 cut(s) 72, 618
NsbI TGCGCA 1 cut(s) 335
NspI RCATGY 1 cut(s) 764
PaeR7I CTCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 820
PaqCI CACCTGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 42, 448
PflFI GACNNNGTC 2 cut(s) 236, 827
PkrI GCNGC 3 cut(s) 227, 329, 753
PleI GAGTC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 606
PsiI TTATAA 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 754, 790
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 2 cut(s) 754, 790
PspN4I GGNNCC 2 cut(s) 72, 618
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 2 cut(s) 236, 827
RsaI GTAC 2 cut(s) 77, 699
RsaNI GTAC 2 cut(s) 76, 698
RseI CAYNNNNRTG 3 cut(s) 191, 410, 825
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 3 cut(s) 226, 328, 752
Sau3AI GATC 2 cut(s) 52, 487
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 607
ScrFI CCNGG 3 cut(s) 236, 756, 792
SduI GDGCHC 3 cut(s) 11, 96, 324
SetI ASST 4 cut(s) 123, 324, 400, 639
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 722
SmiMI CAYNNNNRTG 3 cut(s) 191, 410, 825
SmlI CTYRAG 3 cut(s) 152, 510, 722
SmoI CTYRAG 3 cut(s) 152, 510, 722
Sse9I AATT 3 cut(s) 463, 564, 743
SsiI CCGC 6 cut(s) 223, 243, 325, 328, 408, 752
SspMI CTAG 1 cut(s) 832
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 3 cut(s) 234, 754, 790
TaqI TCGA 4 cut(s) 562, 568, 723, 737
TasI AATT 3 cut(s) 463, 564, 743
TatI WGTACW 1 cut(s) 697
TauI GCSGC 2 cut(s) 330, 754
TfiI GAWTC 2 cut(s) 42, 448
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 4 cut(s) 17, 209, 518, 702
TspRI CASTG 1 cut(s) 193
Tth111I GACNNNGTC 2 cut(s) 236, 827
VneI GTGCAC 1 cut(s) 92
XapI RAATTY 1 cut(s) 564
XceI RCATGY 1 cut(s) 764
XhoI CTCGAG 1 cut(s) 722
XspI CTAG 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.