AT3G48970

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013248
Physical Location & Seq
Reverse (-)
18152236 .. 18153643
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48970.2

Sequence Viewer

Length: 423 bp
ATGTCTATGACAGTGGAGATAAGAGTTCCAAACTTGGATTGTGAAGGATGTGCTTCTAAGCTTAGGAAGACTCTACTCAAGCTTAAAGGAGTGGAAGAAGTGGAAGTAGAGATGGAAACCCAAAAAGTGACGGCTCGAGGATACCGGTTAGAGGAAAAGAAGGTATTGAAAGCGGTACGACGTGCCGGTAAGGCAGCTGAACTGTGGCCATACCGGTTAGGTAATAGCCATTTTGCCTCTTTCTATAAATATCCTTCTTACGTGACCAACCACTATTACTCTGATGCACACCGTACGGATCCCACCGGTGGTGTCCACACTTTCTTCCACACTCCCGCGGATTACTCGGTTGCTGTGGCTGGAGATGAGATCGCGGCTTCGATGTTTAGCGATGATAATCCCCATGCTTGTACTATTATGTAG

Protein Analysis

140

Amino Acids

15.75

Weight (kDa)

7.01

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 5 - 62 3.2e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013248)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48970 AT3G48970 AT3G48970
fragaria_vesca FvH4_7g29520
malus_domestica MD01G1201300.v1.1
prunus_persica Prupe.2G294700_v2.0.a1
pyrus_communis pycom01g21100
rosa_chinensis RchiOBHm_Chr1g0377361
rosa_laevigata RLG00000026525
rosa_multiflora Rmu_co8119758.1_g000001
rosa_roxburghii Rroxscaffold_4G00281280
rosa_rugosa Rorug01G0403000 Rorug01G0403100
rosa_samantha Rh1AG420800 Rh1BG379600 Rh1CG393600 Rh1DG410600
rosa_wichuraiana Rw1G036890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 338, 374
AciI CCGC 4 cut(s) 173, 336, 338, 374
AclWI GGATC 2 cut(s) 293, 306
AcoI YGGCCR 1 cut(s) 206
AfaI GTAC 3 cut(s) 177, 295, 412
AfiI CCNNNNNNNGG 2 cut(s) 151, 308
AgeI ACCGGT 3 cut(s) 144, 213, 305
AgsI TTSAA 1 cut(s) 169
AjiI CACGTC 1 cut(s) 182
AluBI AGCT 3 cut(s) 61, 82, 197
AluI AGCT 3 cut(s) 61, 82, 197
AlwI GGATC 2 cut(s) 293, 306
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 194
AsiGI ACCGGT 3 cut(s) 144, 213, 305
AvaI CYCGRG 1 cut(s) 135
BalI TGGCCA 1 cut(s) 208
BamHI GGATCC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 206
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 147
BciVI GTATCC 1 cut(s) 134
BfuI GTATCC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 195, 375
BlsI GCNGC 2 cut(s) 196, 376
BmeT110I CYCGRG 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 396
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 3 cut(s) 144, 213, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 308
Bse118I RCCGGY 4 cut(s) 144, 185, 213, 305
Bse8I GATNNNNATC 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 2 cut(s) 151, 308
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 2 cut(s) 338, 374
BshFI GGCC 1 cut(s) 208
BshTI ACCGGT 3 cut(s) 144, 213, 305
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 4 cut(s) 145, 186, 214, 306
BsiWI CGTACG 1 cut(s) 293
BslI CCNNNNNNNGG 2 cut(s) 151, 308
BsnI GGCC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 2 cut(s) 298, 369
BspACI CCGC 4 cut(s) 173, 336, 338, 374
BspANI GGCC 1 cut(s) 208
BspFNI CGCG 2 cut(s) 338, 374
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 2 cut(s) 293, 306
BsrFI RCCGGY 4 cut(s) 144, 185, 213, 305
BssAI RCCGGY 4 cut(s) 144, 185, 213, 305
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 298, 369
Bst4CI ACNGT 3 cut(s) 13, 204, 293
BstBAI YACGTR 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 57, 62
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 53
BstFNI CGCG 2 cut(s) 338, 374
BstKTI GATC 2 cut(s) 301, 372
BstMBI GATC 2 cut(s) 298, 369
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstUI CGCG 2 cut(s) 338, 374
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 405
BtrI CACGTC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 18
Cfr10I RCCGGY 4 cut(s) 144, 185, 213, 305
Cfr42I CCGCGG 1 cut(s) 339
Csp6I GTAC 3 cut(s) 176, 294, 411
CspAI ACCGGT 3 cut(s) 144, 213, 305
CviAII CATG 1 cut(s) 404
CviJI RGCY 8 cut(s) 61, 82, 134, 197, 208, 228, 359, 377
CviKI_1 RGCY 8 cut(s) 61, 82, 134, 197, 208, 228, 359, 377
CviQI GTAC 3 cut(s) 176, 294, 411
DdeI CTNAG 2 cut(s) 57, 62
DpnI GATC 2 cut(s) 300, 371
DpnII GATC 2 cut(s) 298, 369
EaeI YGGCCR 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 135
FaeI CATG 1 cut(s) 407
FaiI YATR 5 cut(s) 8, 211, 246, 405, 419
FatI CATG 1 cut(s) 403
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 195, 375
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 195, 375
GluI GCNGC 2 cut(s) 195, 375
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 1 cut(s) 208
HapII CCGG 4 cut(s) 145, 186, 214, 306
Hin1II CATG 1 cut(s) 407
HindIII AAGCTT 2 cut(s) 59, 80
HinfI GANTC 1 cut(s) 70
HpaII CCGG 4 cut(s) 145, 186, 214, 306
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 38, 154, 264
HpyCH4III ACNGT 3 cut(s) 13, 204, 293
HpyCH4IV ACGT 2 cut(s) 181, 261
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 57, 62
HpySE526I ACGT 2 cut(s) 181, 261
Hsp92II CATG 1 cut(s) 407
KspI CCGCGG 1 cut(s) 339
Kzo9I GATC 2 cut(s) 298, 369
LpnPI CCDG 5 cut(s) 158, 199, 227, 319, 345
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 274
MaeII ACGT 2 cut(s) 181, 261
MaeIII GTNAC 2 cut(s) 127, 262
MalI GATC 2 cut(s) 300, 371
MboI GATC 2 cut(s) 298, 369
MboII GAAGA 3 cut(s) 79, 107, 316
MflI RGATCY 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 208
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 3 cut(s) 131, 145, 247
Mox20I TGGCCA 1 cut(s) 208
MscI TGGCCA 1 cut(s) 208
MseI TTAA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 208
MspA1I CMGCKG 2 cut(s) 197, 338
MspI CCGG 4 cut(s) 145, 186, 214, 306
MvnI CGCG 2 cut(s) 338, 374
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 298, 369
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 127, 262
PaeR7I CTCGAG 1 cut(s) 135
Pfl23II CGTACG 1 cut(s) 293
PinAI ACCGGT 3 cut(s) 144, 213, 305
PkrI GCNGC 2 cut(s) 196, 376
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 262
PspLI CGTACG 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 300
PspXI VCTCGAGB 1 cut(s) 135
PsuI RGATCY 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 177, 295, 412
RsaNI GTAC 3 cut(s) 176, 294, 411
SacII CCGCGG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 195, 375
Sau3AI GATC 2 cut(s) 298, 369
SchI GAGTC 1 cut(s) 64
SetI ASST 7 cut(s) 63, 84, 165, 184, 199, 223, 264
SfaNI GCATC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 135
Sfr303I CCGCGG 1 cut(s) 339
SgrAI CRCCGGYG 1 cut(s) 305
SgrBI CCGCGG 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 77, 135
SmoI CTYRAG 2 cut(s) 77, 135
SsiI CCGC 4 cut(s) 173, 336, 338, 374
TaaI ACNGT 3 cut(s) 13, 204, 293
TaiI ACGT 2 cut(s) 184, 264
TaqI TCGA 2 cut(s) 136, 380
TatI WGTACW 1 cut(s) 410
TauI GCSGC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 127, 262
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 2 cut(s) 127, 262
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.