Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0013248

Physical Location & Seq

Genomic Coordinates Reverse (-)

21692572 .. 21693808

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTATGGTGGAAGTGAGAGTTCCAAATCTTGACTGTGAGGGATGTGCTTCCAAGTTAAAGAAAGCTCTCTTCAAGCTCAAAGGTGTTGAAGTAGTGGAAATAGAGATGGAGATCCAAAAGATAAGCGTGAGAGGGTACGCGTTGGATGAAAGGAAAGTGCTAAAGGCGATTAAGCGAGCTGGAAAAGCAGTAGAGCCATGGCCATTTCCTGGTTACTCATCTCATTATGCATCATTTTACAAGTACCCTACATACATTAAGAACCATTACTATGACACCTACAAAAACGAAACCACCACCGGCGTACATACCTTCTTCCACACTCCGGCAGCTTATTCCGTCGCCGTGGCGTCCGATGAGGCCATTGCTTCGCTCTTTAGTGATGACAATCCACATGCTTGCACTATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

7.71

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	6 - 63	3.9e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48970 AT3G48970 AT3G48970
fragaria_vesca	FvH4_7g29520
malus_domestica	MD01G1201300.v1.1
prunus_persica	Prupe.2G294700_v2.0.a1
pyrus_communis	pycom01g21100
rosa_chinensis	RchiOBHm_Chr1g0377361
rosa_laevigata	RLG00000026525
rosa_multiflora	Rmu_co8119758.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281280
rosa_rugosa	Rorug01G0403000 Rorug01G0403100
rosa_samantha	Rh1AG420800 Rh1BG379600 Rh1CG393600 Rh1DG410600
rosa_wichuraiana	Rw1G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	143
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	140, 248, 309
AfiI	CCNNNNNNNGG	2 cut(s)	212, 328
AflIII	ACRYGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	76, 92
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	4 cut(s)	68, 79, 182, 335
AluI	AGCT	4 cut(s)	68, 79, 182, 335
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	2 cut(s)	203, 363
ApeKI	GCWGC	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	113, 390
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	200, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 328
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	2 cut(s)	113, 390
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	200, 348
BseGI	GGATG	2 cut(s)	50, 154
BseJI	GATNNNNATC	2 cut(s)	113, 390
BseLI	CCNNNNNNNGG	2 cut(s)	212, 328
BseMI	GCAATG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	205, 365
BsiSI	CCGG	2 cut(s)	303, 329
BslI	CCNNNNNNNGG	2 cut(s)	212, 328
BsnI	GGCC	2 cut(s)	205, 365
Bsp143I	GATC	1 cut(s)	114
Bsp19I	CCATGG	1 cut(s)	200
BspANI	GGCC	2 cut(s)	205, 365
BspFNI	CGCG	1 cut(s)	143
BspPI	GGATC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	200, 348
BssMI	GATC	1 cut(s)	114
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	180, 403
BstDSI	CCRYGG	2 cut(s)	200, 348
BstF5I	GGATG	2 cut(s)	50, 154
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	205, 365
BtgI	CCRYGG	2 cut(s)	200, 348
BtsCI	GGATG	2 cut(s)	50, 154
Cac8I	GCNNGC	2 cut(s)	180, 403
Cfr10I	RCCGGY	1 cut(s)	302
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	139, 247, 308
CviAII	CATG	2 cut(s)	201, 398
CviJI	RGCY	7 cut(s)	68, 79, 182, 199, 205, 335, 365
CviKI_1	RGCY	7 cut(s)	68, 79, 182, 199, 205, 335, 365
CviQI	GTAC	3 cut(s)	139, 247, 308
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	204, 401
FaiI	YATR	8 cut(s)	8, 202, 231, 256, 276, 312, 399, 413
FatI	CATG	2 cut(s)	200, 397
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	2 cut(s)	57, 161
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	205, 365
HapII	CCGG	2 cut(s)	303, 329
HgaI	GACGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	204, 401
HpaII	CCGG	2 cut(s)	303, 329
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	32
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	2 cut(s)	233, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	204, 401
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	168, 198, 225, 316, 342
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	2 cut(s)	64, 310
MflI	RGATCY	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	205
MluI	ACGCGT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	34, 128, 355
Mox20I	TGGCCA	1 cut(s)	205
Mph1103I	ATGCAT	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	3 cut(s)	59, 174, 261
MslI	CAYNNNNRTG	2 cut(s)	273, 410
Msp20I	TGGCCA	1 cut(s)	205
MspI	CCGG	2 cut(s)	303, 329
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	2 cut(s)	204, 401
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	140, 248, 309
RsaNI	GTAC	3 cut(s)	139, 247, 308
RseI	CAYNNNNRTG	2 cut(s)	273, 410
SaqAI	TTAA	3 cut(s)	59, 174, 261
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	7 cut(s)	70, 81, 88, 184, 284, 317, 337
SfaNI	GCATC	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	273, 410
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	38
Tru1I	TTAA	3 cut(s)	59, 174, 261
Tru9I	TTAA	3 cut(s)	59, 174, 261
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.