AT3G50030

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017179
Physical Location & Seq
Reverse (-)
18546444 .. 18548240
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50030.1

Sequence Viewer

Length: 1506 bp
ATGCTGAAATTCGATGAACCAAAATGCACAAACCCATCCTGTTTCTTCTGCAGCATGAAAGATACCAACCCGTTTCGTCGAAGATCAAAACTCGCTGCAATCTTCAAAGAGATTCCTCGTACGGAGTCAAAAGACCATGTCTTGGTCTTGAGTGGTTTGTGGAACATAGCCATGTCCGAGCCTGACGATCCTGAGTTCCCGTCACTAGGTTTGTTCGAGTGTATGTCAAAACTCATACATAAATCGATCAAAAACAGTGTTTGGCTTCTCAAAGACCAGAACATATTCATTCCTTATTACGCAGCTCATATCATTGGATCGTATGTTATGAACAAGGAAGATTTAGCTGCCATGGCGGTTGATTCAAAGGTCTTTCTTGTTCCTGCTTTGTTGGAGCTTTTGAGAGGGAAGATCAGTTGGGTTGAGCAGCGAGCCGCAGCTCGAGCACTTGGTCATTTAGCTAGCCATGAGAAGAGTTTTGAAGCGGTTTCTTTATTCGAAGAAGAAATTGTGAAGCTTGCAATGGAGATAGCTACTAATTGTTTGAAGAATGTTTACAAAAGCTTTCTTGGGGTTGAAGATAGGGGTAGGTTAAAGTATCAGAGCGATTTGTTGACTAGAGGGCTTGGTGGGTTTGAGACAGAGAATCAAAAAGCAGAGGAATGGGGGATTCAGCTACAATGTTGGTCTTTATTTCTATTGAATTGTTTCGCATCTCGAGTAAACCGGAAGTCTCCGGGAGGACTTGGATTGATAAAGTCTCTTTGTAAAACAGAGTTGGGGAGAAAGAGAGTTAGTGAGGTTAGAGAAGTGATTGAGAGACTTTGCGATCTTTCGAGATCGTCTGATGATTGGAAAGAAACTGCTTTAGATACACTTTTGTTGCTTCTTAAAGACTCAAATGTTAGAGTAGCTCAGATAGTTTTACAAGATTATCACAAGATTAAGTATAGTGGCTTGAAGATGACGACCGAGGAAGCTCATAGAAGTATAGAGAATCTATGGGAGATTAAAGTAGAGAGGAAGAAGAAAGAGAAGCTTATGAGTGAAACAGAGCTTGAAGAAAGAAGAAAGATGGTGAAGTCGTTAAAGAAACAGGGGAAGAAGAAGTTTTTGAAGGGTTTTGTTAAAGAAGCGATGGAGATTTACACAGTTGGGATTGATTTGTGTCCGTTGGATATGTTAAGAGATAGGGTTGTGTTGTTTAGCAACAGAGCACAGTGTTACTTGTTGTTGAAGAAAGTTGAATCTGCTATTAGTGATGCTACTAGGGCTTTGTGTTTATCTGGTGTGAATAATCCCCACGGTAAGAGTTTGTGGAGAAGATCTCAAGCGTTCGATTTAAAAGGATCGACGAGAGAGAGCTTGATGGATTGTTTAGCGTTCGTTGATCATCGAGTCAAGCATTCAAATACACAGAGGATTCCCTACTATGCGGCGCAGATGATAAGAAAACAGATGAGCGCCACGTGTATTTTCTCTGGGGTTGTGTCGAATAGTCGATGA

Protein Analysis

501

Amino Acids

57.33

Weight (kDa)

9.25

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_7 PF26524 7 - 241 4.6e-114 Plant ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50030
fragaria_vesca FvH4_1g17090
malus_domestica MD15G1292100.v1.1
prunus_persica Prupe.6G225200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107261
rosa_laevigata RLG00000017565
rosa_multiflora Rmu_sc0006416.1_g000025
rosa_rugosa Rorug02G0141400
rosa_samantha Rh2AG192100 Rh2BG204000 Rh2CG197400 Rh2DG199400
rosa_wichuraiana Rw2G015200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 142
AciI CCGC 4 cut(s) 356, 435, 485, 1436
AclWI GGATC 3 cut(s) 182, 325, 1357
AcsI RAATTY 1 cut(s) 8
AcvI CACGTG 1 cut(s) 1470
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 142, 206
AflIII ACRYGT 1 cut(s) 1469
Alw21I GWGCWC 2 cut(s) 448, 1219
Alw26I GTCTC 4 cut(s) 632, 738, 765, 814
AlwI GGATC 3 cut(s) 182, 325, 1357
Ama87I CYCGRG 2 cut(s) 441, 717
ApeKI GCWGC 6 cut(s) 51, 95, 302, 347, 427, 437
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 2 cut(s) 284, 707
AspLEI GCGC 2 cut(s) 1441, 1466
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 1090
AsuII TTCGAA 1 cut(s) 498
AsuNHI GCTAGC 1 cut(s) 461
AvaI CYCGRG 2 cut(s) 441, 717
BarI GAAGNNNNNNTAC 2 cut(s) 539, 571
BbrPI CACGTG 1 cut(s) 1470
Bbv12I GWGCWC 2 cut(s) 448, 1219
BbvI GCAGC 6 cut(s) 63, 82, 314, 334, 439, 449
BccI CCATC 4 cut(s) 43, 1069, 1132, 1363
BclI TGATCA 1 cut(s) 1390
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 4 cut(s) 632, 738, 765, 814
BfaI CTAG 4 cut(s) 206, 462, 618, 1269
BfmI CTRYAG 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 1467
BglII AGATCT 1 cut(s) 1325
BisI GCNGC 8 cut(s) 52, 96, 303, 348, 428, 435, 438, 1437
BlsI GCNGC 8 cut(s) 53, 97, 304, 349, 429, 436, 439, 1438
Bme1390I CCNGG 1 cut(s) 738
BmeT110I CYCGRG 2 cut(s) 441, 717
BmrFI CCNGG 1 cut(s) 738
BmsI GCATC 2 cut(s) 722, 1252
BmtI GCTAGC 1 cut(s) 465
BplI GAGNNNNNCTC 2 cut(s) 1312, 1344
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 169, 1314
BpuMI CCSGG 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 1470
BsaJI CCNNGG 3 cut(s) 351, 972, 1303
BsaWI WCCGGW 1 cut(s) 726
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 206
Bse3DI GCAATG 1 cut(s) 528
BseCI ATCGAT 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 351, 972, 1303
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 142, 206
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 183, 929
BseXI GCAGC 6 cut(s) 63, 82, 314, 334, 439, 449
Bsh1285I CGRYCG 1 cut(s) 972
BshVI ATCGAT 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 972
BsiHKAI GWGCWC 2 cut(s) 448, 1219
BsiHKCI CYCGRG 2 cut(s) 441, 717
BsiSI CCGG 2 cut(s) 727, 737
BsiWI CGTACG 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 142, 206
BsmAI GTCTC 4 cut(s) 632, 738, 765, 814
BsmI GAATGC 1 cut(s) 1405
BsoBI CYCGRG 2 cut(s) 441, 717
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 448, 1219
Bsp19I CCATGG 1 cut(s) 351
BspACI CCGC 4 cut(s) 356, 435, 485, 1436
BspCNI CTCAG 2 cut(s) 184, 928
BspDI ATCGAT 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 3 cut(s) 182, 325, 1357
BspT104I TTCGAA 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 528
BssECI CCNNGG 3 cut(s) 351, 972, 1303
BssT1I CCWWGG 1 cut(s) 351
Bst4CI ACNGT 4 cut(s) 257, 1153, 1221, 1307
Bst6I CTCTTC 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 1470
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 432, 463, 519
BstDEI CTNAG 2 cut(s) 192, 915
BstDSI CCRYGG 2 cut(s) 351, 1303
BstF5I GGATG 1 cut(s) 35
BstH2I RGCGCY 1 cut(s) 1467
BstHHI GCGC 2 cut(s) 1441, 1466
BstMAI GTCTC 4 cut(s) 632, 738, 765, 814
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 3 cut(s) 353, 443, 1271
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 6 cut(s) 63, 82, 314, 334, 439, 449
BstX2I RGATCY 1 cut(s) 1325
BstYI RGATCY 1 cut(s) 1325
Bsu15I ATCGAT 1 cut(s) 245
BsuTUI ATCGAT 1 cut(s) 245
BtgI CCRYGG 2 cut(s) 351, 1303
BtgZI GCGATG 1 cut(s) 1151
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 2 cut(s) 262, 1226
Cac8I GCNNGC 3 cut(s) 432, 463, 519
CfoI GCGC 2 cut(s) 1441, 1466
ClaI ATCGAT 1 cut(s) 245
Csp6I GTAC 1 cut(s) 120
CviAII CATG 5 cut(s) 55, 137, 172, 352, 467
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 2 cut(s) 192, 915
DraI TTTAAA 1 cut(s) 1344
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 351
Eco72I CACGTG 1 cut(s) 1470
Eco88I CYCGRG 2 cut(s) 441, 717
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 5 cut(s) 58, 140, 175, 355, 470
FalI AAGNNNNNCTT 2 cut(s) 1023, 1055
FatI CATG 5 cut(s) 54, 136, 171, 351, 466
FbaI TGATCA 1 cut(s) 1390
Fnu4HI GCNGC 8 cut(s) 52, 96, 303, 348, 428, 435, 438, 1437
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 8 cut(s) 52, 96, 303, 348, 428, 435, 438, 1437
FspBI CTAG 4 cut(s) 206, 462, 618, 1269
GlaI GCGC 2 cut(s) 1440, 1465
GluI GCNGC 8 cut(s) 52, 96, 303, 348, 428, 435, 438, 1437
HaeII RGCGCY 1 cut(s) 1467
HapII CCGG 2 cut(s) 727, 737
HhaI GCGC 2 cut(s) 1441, 1466
Hin1II CATG 5 cut(s) 58, 140, 175, 355, 470
Hin6I GCGC 2 cut(s) 1439, 1464
HinP1I GCGC 2 cut(s) 1439, 1464
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 3 cut(s) 515, 562, 1037
HpaII CCGG 2 cut(s) 727, 737
HphI GGTGA 1 cut(s) 1090
Hpy166II GTNNAC 3 cut(s) 556, 615, 724
Hpy188I TCNGA 4 cut(s) 178, 603, 847, 918
Hpy188III TCNNGA 4 cut(s) 148, 191, 717, 837
Hpy8I GTNNAC 3 cut(s) 556, 615, 724
Hpy99I CGWCG 2 cut(s) 81, 1357
HpyAV CCTTC 1 cut(s) 1111
HpyCH4III ACNGT 4 cut(s) 257, 1153, 1221, 1307
HpyCH4IV ACGT 1 cut(s) 1469
HpyCH4V TGCA 4 cut(s) 27, 51, 98, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 443, 1271
HpyF3I CTNAG 2 cut(s) 192, 915
HpySE526I ACGT 1 cut(s) 1469
Hsp92II CATG 5 cut(s) 58, 140, 175, 355, 470
HspAI GCGC 2 cut(s) 1439, 1464
Ksp22I TGATCA 1 cut(s) 1390
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 6 cut(s) 63, 82, 314, 334, 439, 449
LweI GCATC 2 cut(s) 722, 1252
MaeI CTAG 4 cut(s) 206, 462, 618, 1269
MaeII ACGT 1 cut(s) 1469
MaeIII GTNAC 2 cut(s) 201, 1223
MflI RGATCY 1 cut(s) 1325
MhlI GDGCHC 2 cut(s) 448, 1219
MluCI AATT 4 cut(s) 8, 507, 538, 703
MlyI GAGTC 3 cut(s) 134, 890, 1407
MmeI TCCRAC 2 cut(s) 372, 1155
MnlI CCTC 9 cut(s) 126, 398, 614, 652, 734, 793, 967, 1014, 1413
MroXI GAANNNNTTC 2 cut(s) 284, 707
MseI TTAA 8 cut(s) 593, 891, 945, 1011, 1088, 1128, 1184, 1343
MslI CAYNNNNRTG 1 cut(s) 170
MspI CCGG 2 cut(s) 727, 737
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 1405
MwoI GCNNNNNNNGC 3 cut(s) 353, 443, 1271
NciI CCSGG 1 cut(s) 738
NcoI CCATGG 1 cut(s) 351
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 5 cut(s) 58, 140, 175, 355, 470
NmuCI GTSAC 1 cut(s) 201
NspV TTCGAA 1 cut(s) 498
PaeR7I CTCGAG 2 cut(s) 441, 717
PctI GAATGC 1 cut(s) 1405
PdmI GAANNNNTTC 2 cut(s) 284, 707
PfeI GAWTC 7 cut(s) 112, 362, 646, 670, 997, 1247, 1423
Pfl23II CGTACG 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 142
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 8 cut(s) 53, 97, 304, 349, 429, 436, 439, 1438
PleI GAGTC 3 cut(s) 133, 890, 1406
PmaCI CACGTG 1 cut(s) 1470
PmlI CACGTG 1 cut(s) 1470
PpsI GAGTC 3 cut(s) 133, 890, 1406
Ppu21I YACGTR 1 cut(s) 1470
PspCI CACGTG 1 cut(s) 1470
PspLI CGTACG 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 441
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 1325
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 8 cut(s) 593, 891, 945, 1011, 1088, 1128, 1184, 1343
SatI GCNGC 8 cut(s) 52, 96, 303, 348, 428, 435, 438, 1437
SchI GAGTC 3 cut(s) 134, 890, 1407
ScrFI CCNGG 1 cut(s) 738
SduI GDGCHC 2 cut(s) 448, 1219
SfaNI GCATC 2 cut(s) 722, 1252
SfcI CTRYAG 1 cut(s) 49
Sfr274I CTCGAG 2 cut(s) 441, 717
SfuI TTCGAA 1 cut(s) 498
SlaI CTCGAG 2 cut(s) 441, 717
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 4 cut(s) 148, 441, 717, 1329
SmoI CTYRAG 4 cut(s) 148, 441, 717, 1329
Sse9I AATT 4 cut(s) 8, 507, 538, 703
SsiI CCGC 4 cut(s) 356, 435, 485, 1436
SspMI CTAG 4 cut(s) 206, 462, 618, 1269
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 4 cut(s) 257, 1153, 1221, 1307
TaiI ACGT 1 cut(s) 1472
TaqII GACCGA 1 cut(s) 986
TasI AATT 4 cut(s) 8, 507, 538, 703
TauI GCSGC 2 cut(s) 437, 1439
TfiI GAWTC 7 cut(s) 112, 362, 646, 670, 997, 1247, 1423
Tru1I TTAA 8 cut(s) 593, 891, 945, 1011, 1088, 1128, 1184, 1343
Tru9I TTAA 8 cut(s) 593, 891, 945, 1011, 1088, 1128, 1184, 1343
TscAI CASTG 2 cut(s) 262, 1226
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 6 cut(s) 51, 95, 302, 347, 427, 437
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 4 cut(s) 30, 71, 277, 344
TspGWI ACGGA 2 cut(s) 137, 1161
TspRI CASTG 2 cut(s) 262, 1226
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 142
XapI RAATTY 1 cut(s) 8
XhoI CTCGAG 2 cut(s) 441, 717
XmnI GAANNNNTTC 2 cut(s) 284, 707
XspI CTAG 4 cut(s) 206, 462, 618, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.