Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0017179

Physical Location & Seq

Genomic Coordinates Forward (+)

9880303 .. 9882551

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGAAATCACAATCCCAAAACCACAAGACTAAAATGACTCCCAAGTTTCCCTCTGAGCCTTTGTGTACTAAAGCCTCTTGCTTCTTCTGCACCATGAATGAGCCAAGCCCTTCTCTTAGAAAATCCAAAATCAGTAAGTTCTTCAAGGACTTGCCTCTCAGAAATGACCAAGAACAAGTCCTTGCACTAAGCTCTCTTTGGAACATAGCCATGAAGCAGCCAAACGACCCTGAATTCCCTTCCCTCGGAATATTCGAATGCATGGCAAAGCTCATCAACAAAGGCATCAATGACAGAAAATGGCTGCTGAGTGACCAGAACATCTACATCCCTTACTATGCTGCTCATATCATTGGCTCTTACACCATGAACAAGGCTCAGTTTGCAGAAAAGGCTTTGAAATCCGGGGTGGTTCTGCCATTGATGGAGTTGATGAGAGGCAAGATCACTTGGGTTGAGCAAAGAGTGGCAGTTCGAGCTCTTGGTCACATGGCTAGTCATGACAAGATTGTCGAGTCCATTATTGCTTTGAAGCATGAAGTCAAGATTGTTGAGTTGGCTATGAAGACAGCCACTACATGTTTGAAGAGGGTGTACGATGAGTTCATCGGATTGGAGAAGTCGAAGAGATTGAAGTACCATAGTGATTTGATAACAAGAGGGCTTGGGGGGTTGGAAGTTGAGAGCAGAAAAGCTGAGGAATGGGGTAGTCAGCTTCAGTGTTGGTCTCTAAATCTTCTAAACTGCTTTGTCAGCAAAGAAAGCTGTTTAGGTTTGATCTGCAAGAGAGAGTTCTTGATTCAAGTTTGTGGGATATGGGGTGGTTTAGCAAATCCAAATTCACCTGGTGGGATTGGATTGTTGAAAGCAGTTTGTCAAACCAAGTTTGGAAGACAAAGTGTGGCAAATTCACAAGAAGTTATAGAGAGATTATGTAATCTATCAAGGTCTTCAGATAATTGGAAATTAATGGCGATTGATTGTCTTTTGCTACTTCTCAAAGACCCTGAAACCCGAGTCAGAGTGGTGGAGATTTCAGTTGTGTATCTTGTCGATTTGGTTGAAATGAGAAGGCCAAAACTGGGAGACAGAATCACACAGACGCTTTTGCAAGATTACCATAAAATCAAGTATGGGGATTTAAGATTGGGGAGCAAGAAAGCTGAGAGAGCATTGGAGGAGACATGGGATTTGAAGGTAGAGAGAAAAAAGAAGGAGAAGTTAATGTCAAAACAAGAAATCAGAGAGAGAAAATCATTGGTGGGGAAGTTGAAAAAGCAAGGGAATATGAGTTTTCGGGCAGGGAATATTGAAAAAGCAGTGATAGAATACTCAAAGGCATTGGATTTGTGCCCTCTGAAAATGAGGAGGGAAAGGGTTGTGGTTTATAGTAATAGGGCACAGTGTTACTTGTTGATGAAGAATCCAGAGGCAGCCATTAGTGACACAACTAGAGCTCTGTGTTTGTCCTCAGGTGAGGCGAGGGTTCATGGTAAGAGCTTGTGGAGGAGGTCACAGGCTTATGAGATGCAAGGGTTGGCAAGGGAGAGCTTGATGGATTGCTTGGAGTTTGTTAATGGACGAAGGCTGAAGTCTGAGCAGGGAAAAGACGGGAGGATCCCCTACTACGCGGCACGGATGATCAGCAAGCAGTTTAGCGCCACGTGGACGTACAACATACCGGAGGATTTTTCTTTTTCCGGCAAGCCTACCGTTGTAGAAGAAAAGTTCACTGAAAGAAGGAGAAAGGTAAAAAGGGAGAGAAGAATAGAAGAGGGTGTCATTGTCAATGCCAAGGCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

602

Amino Acids

68.81

Weight (kDa)

9.61

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_7	PF26524	21 - 262	6.3e-124	Plant ARM repeat
TPR_BSK1_C	PF25575	409 - 491	9.9e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50030
fragaria_vesca	FvH4_1g17090
malus_domestica	MD15G1292100.v1.1
prunus_persica	Prupe.6G225200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107261
rosa_laevigata	RLG00000017565
rosa_multiflora	Rmu_sc0006416.1_g000025
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192100 Rh2BG204000 Rh2CG197400 Rh2DG199400
rosa_wichuraiana	Rw2G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
AccII	CGCG	1 cut(s)	1631
AciI	CCGC	1 cut(s)	1631
AclWI	GGATC	2 cut(s)	1612, 1625
AcsI	RAATTY	3 cut(s)	233, 838, 907
AcuI	CTGAAG	3 cut(s)	701, 936, 1610
AcvI	CACGTG	1 cut(s)	1665
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	67, 596, 638, 1673
AfiI	CCNNNNNNNGG	2 cut(s)	245, 1082
AflIII	ACRYGT	1 cut(s)	578
AjnI	CCWGG	1 cut(s)	844
Alw21I	GWGCWC	2 cut(s)	481, 1459
Alw26I	GTCTC	3 cut(s)	732, 1080, 1175
AlwI	GGATC	2 cut(s)	1612, 1625
Ama87I	CYCGRG	1 cut(s)	1014
AoxI	GGCC	1 cut(s)	1073
ApeKI	GCWGC	4 cut(s)	217, 304, 341, 1433
ApoI	RAATTY	3 cut(s)	233, 838, 907
ArsI	GACNNNNNNTTYG	2 cut(s)	1174, 1206
AseI	ATTAAT	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	1661
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	834, 1487
AsuII	TTCGAA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	1014
AxyI	CCTNAGG	1 cut(s)	1471
BaeGI	GKGCMC	2 cut(s)	1355, 1402
BamHI	GGATCC	1 cut(s)	1617
BanII	GRGCYC	2 cut(s)	481, 1459
BarI	GAAGNNNNNNTAC	2 cut(s)	578, 610
BbrPI	CACGTG	1 cut(s)	1665
BbsI	GAAGAC	3 cut(s)	572, 898, 942
Bbv12I	GWGCWC	2 cut(s)	481, 1459
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	4 cut(s)	229, 291, 328, 1445
BccI	CCATC	2 cut(s)	418, 1549
BciT130I	CCWGG	1 cut(s)	846
BclI	TGATCA	1 cut(s)	1641
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	732, 1080, 1175
BfaI	CTAG	2 cut(s)	495, 1452
BfoI	RGCGCY	1 cut(s)	1662
BisI	GCNGC	5 cut(s)	218, 305, 342, 1434, 1632
BlsI	GCNGC	5 cut(s)	219, 306, 343, 1435, 1633
Bme1390I	CCNGG	2 cut(s)	406, 846
BmeT110I	CYCGRG	1 cut(s)	1014
BmiI	GGNNCC	1 cut(s)	1619
BmrFI	CCNGG	2 cut(s)	406, 846
BmrI	ACTGGG	1 cut(s)	1091
BmsI	GCATC	2 cut(s)	294, 1518
BmuI	ACTGGG	1 cut(s)	1091
BpiI	GAAGAC	3 cut(s)	572, 898, 942
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	1665
BsaI	GGTCTC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	244, 405, 1794
BsaWI	WCCGGW	1 cut(s)	1681
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 1082
Bse1I	ACTGG	1 cut(s)	1086
Bse21I	CCTNAGG	1 cut(s)	1471
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	244, 405, 1794
BseGI	GGATG	2 cut(s)	327, 1644
BseLI	CCNNNNNNNGG	2 cut(s)	245, 1082
BseMII	CTCAG	8 cut(s)	45, 172, 299, 392, 687, 1155, 1485, 1587
BseNI	ACTGG	1 cut(s)	1086
BseRI	GAGGAG	3 cut(s)	1193, 1381, 1522
BseSI	GKGCMC	2 cut(s)	1355, 1402
BseXI	GCAGC	4 cut(s)	229, 291, 328, 1445
BsgI	GTGCAG	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	1631
BshFI	GGCC	1 cut(s)	1075
BsiHKAI	GWGCWC	2 cut(s)	481, 1459
BsiHKCI	CYCGRG	1 cut(s)	1014
BsiSI	CCGG	3 cut(s)	405, 1682, 1701
BslI	CCNNNNNNNGG	2 cut(s)	245, 1082
BsmAI	GTCTC	3 cut(s)	732, 1080, 1175
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	1075
Bso31I	GGTCTC	1 cut(s)	732
BsoBI	CYCGRG	1 cut(s)	1014
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	4 cut(s)	481, 1355, 1402, 1459
Bsp143I	GATC	4 cut(s)	444, 777, 1617, 1641
BspACI	CCGC	1 cut(s)	1631
BspANI	GGCC	1 cut(s)	1075
BspCNI	CTCAG	8 cut(s)	46, 171, 300, 391, 688, 1156, 1484, 1588
BspFNI	CGCG	1 cut(s)	1631
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	1619
BspPI	GGATC	2 cut(s)	1612, 1625
BspT104I	TTCGAA	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	732
BsrI	ACTGG	1 cut(s)	1086
BssECI	CCNNGG	3 cut(s)	244, 405, 1794
BssMI	GATC	4 cut(s)	444, 777, 1617, 1641
BssT1I	CCWWGG	1 cut(s)	1794
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	1404, 1714
Bst6I	CTCTTC	3 cut(s)	581, 620, 1767
BstBAI	YACGTR	1 cut(s)	1665
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	1649, 1706
BstF5I	GGATG	2 cut(s)	327, 1644
BstFNI	CGCG	1 cut(s)	1631
BstH2I	RGCGCY	1 cut(s)	1662
BstHHI	GCGC	1 cut(s)	1661
BstKTI	GATC	4 cut(s)	447, 780, 1620, 1644
BstMAI	GTCTC	3 cut(s)	732, 1080, 1175
BstMBI	GATC	4 cut(s)	444, 777, 1617, 1641
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 383, 392, 476, 753, 762, 1169
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	404, 844
BstSLI	GKGCMC	2 cut(s)	1355, 1402
BstUI	CGCG	1 cut(s)	1631
BstV1I	GCAGC	4 cut(s)	229, 291, 328, 1445
BstV2I	GAAGAC	3 cut(s)	572, 898, 942
BstX2I	RGATCY	1 cut(s)	1617
BstYI	RGATCY	1 cut(s)	1617
Bsu36I	CCTNAGG	1 cut(s)	1471
BsuRI	GGCC	1 cut(s)	1075
BtsCI	GGATG	2 cut(s)	327, 1644
BtsI	GCAGTG	1 cut(s)	1326
BtsIMutI	CAGTG	4 cut(s)	725, 1326, 1409, 1731
Cac8I	GCNNGC	2 cut(s)	1649, 1706
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	1661
CseI	GACGC	1 cut(s)	1111
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	66, 595, 637, 1672
CviQI	GTAC	4 cut(s)	66, 595, 637, 1672
DpnI	GATC	4 cut(s)	446, 779, 1619, 1643
DpnII	GATC	4 cut(s)	444, 777, 1617, 1641
DraIII	CACNNNGTG	1 cut(s)	848
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
Eam1104I	CTCTTC	3 cut(s)	581, 620, 1767
EarI	CTCTTC	3 cut(s)	581, 620, 1767
Ecl136II	GAGCTC	2 cut(s)	479, 1457
Eco130I	CCWWGG	1 cut(s)	1794
Eco24I	GRGCYC	2 cut(s)	481, 1459
Eco31I	GGTCTC	1 cut(s)	732
Eco53kI	GAGCTC	2 cut(s)	479, 1457
Eco57I	CTGAAG	3 cut(s)	701, 936, 1610
Eco72I	CACGTG	1 cut(s)	1665
Eco81I	CCTNAGG	1 cut(s)	1471
Eco88I	CYCGRG	1 cut(s)	1014
EcoICRI	GAGCTC	2 cut(s)	479, 1457
EcoRI	GAATTC	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	1794
EcoT22I	ATGCAT	1 cut(s)	263
EcoT38I	GRGCYC	2 cut(s)	481, 1459
ErhI	CCWWGG	1 cut(s)	1794
FbaI	TGATCA	1 cut(s)	1641
Fnu4HI	GCNGC	5 cut(s)	218, 305, 342, 1434, 1632
FokI	GGATG	2 cut(s)	314, 1651
FriOI	GRGCYC	2 cut(s)	481, 1459
Fsp4HI	GCNGC	5 cut(s)	218, 305, 342, 1434, 1632
FspBI	CTAG	2 cut(s)	495, 1452
GlaI	GCGC	1 cut(s)	1660
GluI	GCNGC	5 cut(s)	218, 305, 342, 1434, 1632
HaeII	RGCGCY	1 cut(s)	1662
HaeIII	GGCC	1 cut(s)	1075
HapII	CCGG	3 cut(s)	405, 1682, 1701
HgaI	GACGC	1 cut(s)	1111
HhaI	GCGC	1 cut(s)	1661
Hin6I	GCGC	1 cut(s)	1659
HinP1I	GCGC	1 cut(s)	1659
HinfI	GANTC	6 cut(s)	37, 515, 799, 1017, 1092, 1423
HpaII	CCGG	3 cut(s)	405, 1682, 1701
HphI	GGTGA	2 cut(s)	834, 1487
Hpy166II	GTNNAC	4 cut(s)	66, 595, 1668, 1731
Hpy188I	TCNGA	9 cut(s)	55, 161, 248, 611, 955, 1022, 1244, 1359, 1597
Hpy188III	TCNNGA	4 cut(s)	500, 544, 796, 1427
Hpy8I	GTNNAC	4 cut(s)	66, 595, 1668, 1731
HpyAV	CCTTC	7 cut(s)	120, 249, 1065, 1189, 1207, 1578, 1734
HpyCH4III	ACNGT	2 cut(s)	1404, 1714
HpyCH4IV	ACGT	2 cut(s)	1664, 1670
HpyCH4V	TGCA	7 cut(s)	90, 185, 261, 386, 783, 1111, 1531
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 383, 392, 476, 753, 762, 1169
HpySE526I	ACGT	2 cut(s)	1664, 1670
HspAI	GCGC	1 cut(s)	1659
Ksp22I	TGATCA	1 cut(s)	1641
Kzo9I	GATC	4 cut(s)	444, 777, 1617, 1641
LmnI	GCTCC	1 cut(s)	1152
Lsp1109I	GCAGC	4 cut(s)	229, 291, 328, 1445
LweI	GCATC	2 cut(s)	294, 1518
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	2 cut(s)	495, 1452
MaeII	ACGT	2 cut(s)	1664, 1670
MaeIII	GTNAC	5 cut(s)	311, 485, 1406, 1442, 1512
MalI	GATC	4 cut(s)	446, 779, 1619, 1643
MboI	GATC	4 cut(s)	444, 777, 1617, 1641
MflI	RGATCY	1 cut(s)	1617
MhlI	GDGCHC	4 cut(s)	481, 1355, 1402, 1459
MluCI	AATT	5 cut(s)	233, 838, 907, 958, 965
MlyI	GAGTC	3 cut(s)	31, 524, 1026
MmeI	TCCRAC	1 cut(s)	654
Mph1103I	ATGCAT	1 cut(s)	263
MseI	TTAA	4 cut(s)	968, 1142, 1223, 1575
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	3 cut(s)	405, 1682, 1701
MspR9I	CCNGG	2 cut(s)	406, 846
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	1 cut(s)	1631
MwoI	GCNNNNNNNGC	7 cut(s)	87, 383, 392, 476, 753, 762, 1169
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	444, 777, 1617, 1641
NlaIV	GGNNCC	1 cut(s)	1619
NmuCI	GTSAC	4 cut(s)	311, 485, 1442, 1512
NsiI	ATGCAT	1 cut(s)	263
NspI	RCATGY	1 cut(s)	582
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	499
PciI	ACATGT	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	799, 1092, 1423
PkrI	GCNGC	5 cut(s)	219, 306, 343, 1435, 1633
PleI	GAGTC	3 cut(s)	31, 523, 1025
PmaCI	CACGTG	1 cut(s)	1665
PmlI	CACGTG	1 cut(s)	1665
PpsI	GAGTC	3 cut(s)	31, 523, 1025
Ppu21I	YACGTR	1 cut(s)	1665
PscI	ACATGT	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	968
Psp124BI	GAGCTC	2 cut(s)	481, 1459
Psp6I	CCWGG	1 cut(s)	844
PspCI	CACGTG	1 cut(s)	1665
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	1 cut(s)	1619
PsrI	GAACNNNNNNTAC	2 cut(s)	587, 619
PsuI	RGATCY	1 cut(s)	1617
RsaI	GTAC	4 cut(s)	67, 596, 638, 1673
RsaNI	GTAC	4 cut(s)	66, 595, 637, 1672
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	2 cut(s)	481, 1459
SaqAI	TTAA	4 cut(s)	968, 1142, 1223, 1575
SatI	GCNGC	5 cut(s)	218, 305, 342, 1434, 1632
Sau3AI	GATC	4 cut(s)	444, 777, 1617, 1641
SchI	GAGTC	3 cut(s)	31, 524, 1026
ScrFI	CCNGG	2 cut(s)	406, 846
SduI	GDGCHC	4 cut(s)	481, 1355, 1402, 1459
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	2 cut(s)	294, 1518
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	233, 838, 907, 958, 965
SsiI	CCGC	1 cut(s)	1631
SspI	AATATT	2 cut(s)	252, 1309
SspMI	CTAG	2 cut(s)	495, 1452
SstI	GAGCTC	2 cut(s)	481, 1459
StyD4I	CCNGG	2 cut(s)	404, 844
StyI	CCWWGG	1 cut(s)	1794
TaaI	ACNGT	2 cut(s)	1404, 1714
TaiI	ACGT	2 cut(s)	1667, 1673
TaqI	TCGA	5 cut(s)	255, 475, 513, 623, 1053
TasI	AATT	5 cut(s)	233, 838, 907, 958, 965
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	1634
TfiI	GAWTC	3 cut(s)	799, 1092, 1423
Tru1I	TTAA	4 cut(s)	968, 1142, 1223, 1575
Tru9I	TTAA	4 cut(s)	968, 1142, 1223, 1575
TscAI	CASTG	4 cut(s)	725, 1326, 1409, 1738
TseFI	GTSAC	4 cut(s)	311, 485, 1442, 1512
TseI	GCWGC	4 cut(s)	217, 304, 341, 1433
Tsp45I	GTSAC	4 cut(s)	311, 485, 1442, 1512
TspDTI	ATGAA	9 cut(s)	17, 110, 227, 383, 552, 578, 595, 1433, 1478
TspGWI	ACGGA	1 cut(s)	1651
TspRI	CASTG	4 cut(s)	725, 1326, 1409, 1738
VspI	ATTAAT	1 cut(s)	968
XapI	RAATTY	3 cut(s)	233, 838, 907
XceI	RCATGY	1 cut(s)	582
XspI	CTAG	2 cut(s)	495, 1452
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.