Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006416.1

Orthogroup ID

OG0017179

Physical Location & Seq

Genomic Coordinates Reverse (-)

69396 .. 71192

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006416.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

atggaatcaaaatcccaaaccaacaagaccaaaaagactcccaaacatccctctgagcctgtgtgtactaaaccctcttgcttcttctgcaccatgaatgaaccaaacccttctttcagaaaatccaaaatcattaagctcttcaaggacttgcctctcaaaaatgaccaagagcaagtccttgcactaagctctctctggaacatagccatgaagcaacctaacgaccctgaattcccatcgcttggaatcttcgaatgcatggcaaagctcatcaacaaaggtatcaacgacaaaaagtggctgcttagcgaccagaacatatacatcccttactatgctgctcatatcgttggctcttacaccatgaacaaggctcagtttgcagaaaaggctttgaaatctggggtagttctgcctctaatggagttgatgagaggtaagatcacttgggttgagcaaagagtggcagttcgagctcttggtcacatggctggtcatgacgggatcgttgagtccattattgctttgaagcatgaagtcaagattgtcgagttggctatgaagatagcctctacatgtttgaagagggtgtacgatgagtttatcggattcgagcactcgaagagattgaagtaccattgtgatttgataacaagagggcttggggggctggaaattgagagcagaaaagctgaggaatggggcagtcagcttcagtgctggtccctaaatcttctcaactgctttgtgagcaaagaaagctgtttaggtttgatttgcaagaaggaattcttggttgaagtttgtgggatttggggtggtttagcaaatccaaactcacctggtggaattgggttgttgaaagcactttgtcaaaccaagtttggaagacaaagtgtggcaaattcacaagaagttatagagagattatgtaatctctcaaggtcttcagatgaatggaaattaatggcagttgattgtcttttgctgcttctcaaagaccccgaaacccgaatcaaagtggtggagatttcagttgtgtatcttgtcgatttggttgaaatgagaaaaccaaaactaggagacagaatcacacagatgcttttgcaagattaccataaaatcaagtatggggacttgagattggggagcaagaaagctgagagagcattggaggagatatgggatttgaaggttgagagaaaaaagaaggagaagttaatgtcaaaacaagaaatcagagagagaaaatcaatggtaggaaagttgaaaaagcaagggaatatgagtttttgggcagggaatattgaaaaggctgtgattgaatactcagaagcgttggatttgtgccctttaaaaatgacgagggaaaggattgtggtttatagtaatagggcacagtgttacttgttgatgaagaatccagaagcagccattagtgacacaaccagagctctgtgtttgtcaaccggtgcggcgagggttcattgtaagagcctgtggaggaggtcacaggcttatgagatgaaagggttggcaagggagagcttgatggattgcttggagtttgtcaatggaaaatttttgatgtctgaacaggggaaaggtgggaggatcccgtactacgctgcacgaatgattagcaagcagatgaggcccacgtggatgtataacaaacctgaagaggacttcccttttacaggtaagcctaccattgtagaagaaatgttcactgaaagaaggagaaaggtaaagaaggggggaagaaaagaaaagggtgacaagacagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0016020 GO:0019867 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

598

Amino Acids

68.28

Weight (kDa)

9.39

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50030
fragaria_vesca	FvH4_1g17090
malus_domestica	MD15G1292100.v1.1
prunus_persica	Prupe.6G225200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0107261
rosa_laevigata	RLG00000017565
rosa_multiflora	Rmu_sc0006416.1_g000025
rosa_rugosa	Rorug02G0141400
rosa_samantha	Rh2AG192100 Rh2BG204000 Rh2CG197400 Rh2DG199400
rosa_wichuraiana	Rw2G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AciI	CCGC	1 cut(s)	1478
AclWI	GGATC	3 cut(s)	515, 1612, 1625
AcsI	RAATTY	4 cut(s)	233, 791, 907, 1583
AcuI	CTGAAG	3 cut(s)	701, 936, 1704
AcvI	CACGTG	1 cut(s)	1665
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	4 cut(s)	67, 596, 638, 1625
AfiI	CCNNNNNNNGG	3 cut(s)	245, 1082, 1703
AflIII	ACRYGT	1 cut(s)	578
AgeI	ACCGGT	1 cut(s)	1472
AjnI	CCWGG	1 cut(s)	844
AjuI	GAANNNNNNNTTGG	2 cut(s)	779, 811
Alw21I	GWGCWC	3 cut(s)	481, 621, 1459
Alw26I	GTCTC	1 cut(s)	1080
AlwI	GGATC	3 cut(s)	515, 1612, 1625
AoxI	GGCC	1 cut(s)	1658
ApeKI	GCWGC	5 cut(s)	304, 341, 991, 1433, 1631
ApoI	RAATTY	4 cut(s)	233, 791, 907, 1583
AseI	ATTAAT	1 cut(s)	968
AsiGI	ACCGGT	1 cut(s)	1472
Asp700I	GAANNNNTTC	1 cut(s)	791
AspS9I	GGNCC	2 cut(s)	726, 1659
AsuHPI	GGTGA	2 cut(s)	834, 1793
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	726
BaeGI	GKGCMC	2 cut(s)	1355, 1402
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BamHI	GGATCC	1 cut(s)	1617
BanII	GRGCYC	2 cut(s)	481, 1459
BarI	GAAGNNNNNNTAC	2 cut(s)	578, 610
BbrPI	CACGTG	1 cut(s)	1665
BbsI	GAAGAC	2 cut(s)	898, 942
Bbv12I	GWGCWC	3 cut(s)	481, 621, 1459
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	5 cut(s)	291, 328, 978, 1445, 1618
BccI	CCATC	2 cut(s)	247, 1549
BciT130I	CCWGG	1 cut(s)	846
BcoDI	GTCTC	1 cut(s)	1080
BfaI	CTAG	1 cut(s)	1082
BisI	GCNGC	6 cut(s)	305, 342, 992, 1434, 1479, 1632
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	6 cut(s)	306, 343, 993, 1435, 1480, 1633
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	726, 1659
BmiI	GGNNCC	2 cut(s)	728, 1619
BmrFI	CCNGG	1 cut(s)	846
BmsI	GCATC	1 cut(s)	1092
BpiI	GAAGAC	2 cut(s)	898, 942
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	308
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	928, 1162
BsaAI	YACGTR	1 cut(s)	1665
BsaWI	WCCGGW	1 cut(s)	1472
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 1082, 1703
Bse118I	RCCGGY	1 cut(s)	1472
BseBI	CCWGG	1 cut(s)	846
BseGI	GGATG	3 cut(s)	46, 327, 1674
BseLI	CCNNNNNNNGG	3 cut(s)	245, 1082, 1703
BseMII	CTCAG	5 cut(s)	45, 392, 687, 1155, 1347
BseRI	GAGGAG	2 cut(s)	1193, 1522
BseSI	GKGCMC	2 cut(s)	1355, 1402
BseXI	GCAGC	5 cut(s)	291, 328, 978, 1445, 1618
BsgI	GTGCAG	2 cut(s)	73, 1617
BshFI	GGCC	1 cut(s)	1660
BshTI	ACCGGT	1 cut(s)	1472
BsiHKAI	GWGCWC	3 cut(s)	481, 621, 1459
BsiSI	CCGG	1 cut(s)	1473
BslFI	GGGAC	2 cut(s)	712, 1151
BslI	CCNNNNNNNGG	3 cut(s)	245, 1082, 1703
BsmAI	GTCTC	1 cut(s)	1080
BsmFI	GGGAC	2 cut(s)	712, 1151
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	1 cut(s)	1660
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	5 cut(s)	481, 621, 1355, 1402, 1459
Bsp143I	GATC	3 cut(s)	444, 507, 1617
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	1478
BspANI	GGCC	1 cut(s)	1660
BspCNI	CTCAG	5 cut(s)	46, 391, 688, 1156, 1346
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	728, 1619
BspPI	GGATC	3 cut(s)	515, 1612, 1625
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	1472
BssAI	RCCGGY	1 cut(s)	1472
BssMI	GATC	3 cut(s)	444, 507, 1617
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	1404
Bst6I	CTCTTC	4 cut(s)	146, 581, 620, 1680
BstBAI	YACGTR	1 cut(s)	1665
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	1649
BstDEI	CTNAG	7 cut(s)	54, 188, 308, 378, 696, 1164, 1333
BstENI	CCTNNNNNAGG	1 cut(s)	1701
BstF5I	GGATG	3 cut(s)	46, 327, 1674
BstKTI	GATC	3 cut(s)	447, 510, 1620
BstMAI	GTCTC	1 cut(s)	1080
BstMBI	GATC	3 cut(s)	444, 507, 1617
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 383, 392, 476, 670, 753, 762, 1169, 1657
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	844
BstSLI	GKGCMC	2 cut(s)	1355, 1402
BstV1I	GCAGC	5 cut(s)	291, 328, 978, 1445, 1618
BstV2I	GAAGAC	2 cut(s)	898, 942
BstX2I	RGATCY	1 cut(s)	1617
BstYI	RGATCY	1 cut(s)	1617
BsuRI	GGCC	1 cut(s)	1660
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	3 cut(s)	46, 327, 1674
BtsIMutI	CAGTG	3 cut(s)	725, 1409, 1734
Cac8I	GCNNGC	1 cut(s)	1649
CciI	TCATGA	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	1472
Cfr13I	GGNCC	2 cut(s)	726, 1659
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	4 cut(s)	66, 595, 637, 1624
CspAI	ACCGGT	1 cut(s)	1472
CviAII	CATG	8 cut(s)	94, 211, 262, 367, 490, 500, 536, 579
CviQI	GTAC	4 cut(s)	66, 595, 637, 1624
DdeI	CTNAG	7 cut(s)	54, 188, 308, 378, 696, 1164, 1333
DpnI	GATC	3 cut(s)	446, 509, 1619
DpnII	GATC	3 cut(s)	444, 507, 1617
DraI	TTTAAA	1 cut(s)	1359
DraIII	CACNNNGTG	1 cut(s)	848
Eam1104I	CTCTTC	4 cut(s)	146, 581, 620, 1680
EarI	CTCTTC	4 cut(s)	146, 581, 620, 1680
Ecl136II	GAGCTC	2 cut(s)	479, 1457
Eco24I	GRGCYC	2 cut(s)	481, 1459
Eco47I	GGWCC	1 cut(s)	726
Eco53kI	GAGCTC	2 cut(s)	479, 1457
Eco57I	CTGAAG	3 cut(s)	701, 936, 1704
Eco72I	CACGTG	1 cut(s)	1665
EcoICRI	GAGCTC	2 cut(s)	479, 1457
EcoNI	CCTNNNNNAGG	1 cut(s)	1701
EcoRI	GAATTC	2 cut(s)	233, 791
EcoRII	CCWGG	1 cut(s)	844
EcoT22I	ATGCAT	1 cut(s)	263
EcoT38I	GRGCYC	2 cut(s)	481, 1459
FaeI	CATG	8 cut(s)	97, 214, 265, 370, 493, 503, 539, 582
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FaqI	GGGAC	2 cut(s)	712, 1151
FatI	CATG	8 cut(s)	93, 210, 261, 366, 489, 499, 535, 578
Fnu4HI	GCNGC	6 cut(s)	305, 342, 992, 1434, 1479, 1632
FokI	GGATG	3 cut(s)	33, 314, 1681
FriOI	GRGCYC	2 cut(s)	481, 1459
Fsp4HI	GCNGC	6 cut(s)	305, 342, 992, 1434, 1479, 1632
FspBI	CTAG	1 cut(s)	1082
GluI	GCNGC	6 cut(s)	305, 342, 992, 1434, 1479, 1632
HaeIII	GGCC	1 cut(s)	1660
HapII	CCGG	1 cut(s)	1473
Hin1II	CATG	8 cut(s)	97, 214, 265, 370, 493, 503, 539, 582
HincII	GTYRAC	1 cut(s)	1470
HindII	GTYRAC	1 cut(s)	1470
HinfI	GANTC	8 cut(s)	5, 37, 249, 515, 612, 1017, 1092, 1423
HpaII	CCGG	1 cut(s)	1473
HphI	GGTGA	2 cut(s)	834, 1793
Hpy166II	GTNNAC	4 cut(s)	66, 595, 1470, 1734
Hpy188I	TCNGA	7 cut(s)	55, 119, 611, 955, 1244, 1336, 1597
Hpy188III	TCNNGA	4 cut(s)	199, 500, 544, 1427
Hpy8I	GTNNAC	4 cut(s)	66, 595, 1470, 1734
HpyAV	CCTTC	6 cut(s)	120, 781, 1189, 1207, 1737, 1753
HpyCH4III	ACNGT	1 cut(s)	1404
HpyCH4IV	ACGT	1 cut(s)	1664
HpyCH4V	TGCA	7 cut(s)	90, 185, 261, 386, 783, 1111, 1634
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 383, 392, 476, 670, 753, 762, 1169, 1657
HpyF3I	CTNAG	7 cut(s)	54, 188, 308, 378, 696, 1164, 1333
HpySE526I	ACGT	1 cut(s)	1664
Hsp92II	CATG	8 cut(s)	97, 214, 265, 370, 493, 503, 539, 582
Kzo9I	GATC	3 cut(s)	444, 507, 1617
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	1152
Lsp1109I	GCAGC	5 cut(s)	291, 328, 978, 1445, 1618
LweI	GCATC	1 cut(s)	1092
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	1 cut(s)	1082
MaeII	ACGT	1 cut(s)	1664
MaeIII	GTNAC	5 cut(s)	485, 1406, 1442, 1512, 1781
MalI	GATC	3 cut(s)	446, 509, 1619
MboI	GATC	3 cut(s)	444, 507, 1617
MflI	RGATCY	1 cut(s)	1617
MhlI	GDGCHC	5 cut(s)	481, 621, 1355, 1402, 1459
MluCI	AATT	7 cut(s)	233, 678, 791, 852, 907, 965, 1583
MlyI	GAGTC	2 cut(s)	31, 524
MmeI	TCCRAC	1 cut(s)	1323
Mph1103I	ATGCAT	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	4 cut(s)	135, 968, 1223, 1358
MslI	CAYNNNNRTG	3 cut(s)	209, 1100, 1667
MspI	CCGG	1 cut(s)	1473
MspR9I	CCNGG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	9 cut(s)	87, 383, 392, 476, 670, 753, 762, 1169, 1657
NdeII	GATC	3 cut(s)	444, 507, 1617
NlaIII	CATG	8 cut(s)	97, 214, 265, 370, 493, 503, 539, 582
NlaIV	GGNNCC	2 cut(s)	728, 1619
NmuCI	GTSAC	4 cut(s)	485, 1442, 1512, 1781
NsiI	ATGCAT	1 cut(s)	263
NspI	RCATGY	1 cut(s)	582
NspV	TTCGAA	1 cut(s)	255
PagI	TCATGA	1 cut(s)	499
PciI	ACATGT	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	6 cut(s)	5, 249, 612, 1017, 1092, 1423
PflMI	CCANNNNNTGG	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	1472
PkrI	GCNGC	6 cut(s)	306, 343, 993, 1435, 1480, 1633
PleI	GAGTC	2 cut(s)	31, 523
PmaCI	CACGTG	1 cut(s)	1665
PmlI	CACGTG	1 cut(s)	1665
PpsI	GAGTC	2 cut(s)	31, 523
Ppu21I	YACGTR	1 cut(s)	1665
PscI	ACATGT	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	968
Psp124BI	GAGCTC	2 cut(s)	481, 1459
Psp6I	CCWGG	1 cut(s)	844
PspCI	CACGTG	1 cut(s)	1665
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	2 cut(s)	728, 1619
PspPI	GGNCC	2 cut(s)	726, 1659
PsuI	RGATCY	1 cut(s)	1617
RsaI	GTAC	4 cut(s)	67, 596, 638, 1625
RsaNI	GTAC	4 cut(s)	66, 595, 637, 1624
RseI	CAYNNNNRTG	3 cut(s)	209, 1100, 1667
SacI	GAGCTC	2 cut(s)	481, 1459
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	135, 968, 1223, 1358
SatI	GCNGC	6 cut(s)	305, 342, 992, 1434, 1479, 1632
Sau3AI	GATC	3 cut(s)	444, 507, 1617
Sau96I	GGNCC	2 cut(s)	726, 1659
SchI	GAGTC	2 cut(s)	31, 524
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	5 cut(s)	481, 621, 1355, 1402, 1459
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	1 cut(s)	1092
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	726
SmiMI	CAYNNNNRTG	3 cut(s)	209, 1100, 1667
SmlI	CTYRAG	2 cut(s)	943, 1141
SmoI	CTYRAG	2 cut(s)	943, 1141
Sse9I	AATT	7 cut(s)	233, 678, 791, 852, 907, 965, 1583
SsiI	CCGC	1 cut(s)	1478
SspI	AATATT	1 cut(s)	1309
SspMI	CTAG	1 cut(s)	1082
SstI	GAGCTC	2 cut(s)	481, 1459
StyD4I	CCNGG	1 cut(s)	844
TaaI	ACNGT	1 cut(s)	1404
TaiI	ACGT	1 cut(s)	1667
TaqI	TCGA	6 cut(s)	255, 475, 552, 615, 623, 1053
TasI	AATT	7 cut(s)	233, 678, 791, 852, 907, 965, 1583
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	1481
TfiI	GAWTC	6 cut(s)	5, 249, 612, 1017, 1092, 1423
Tru1I	TTAA	4 cut(s)	135, 968, 1223, 1358
Tru9I	TTAA	4 cut(s)	135, 968, 1223, 1358
TscAI	CASTG	3 cut(s)	725, 1409, 1741
TseFI	GTSAC	4 cut(s)	485, 1442, 1512, 1781
TseI	GCWGC	5 cut(s)	304, 341, 991, 1433, 1631
Tsp45I	GTSAC	4 cut(s)	485, 1442, 1512, 1781
TspRI	CASTG	3 cut(s)	725, 1409, 1741
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	726
VspI	ATTAAT	1 cut(s)	968
XagI	CCTNNNNNAGG	1 cut(s)	1701
XapI	RAATTY	4 cut(s)	233, 791, 907, 1583
XceI	RCATGY	1 cut(s)	582
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	1 cut(s)	1082
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.