Prupe.6G225200_v2.0.a1

ARM-repeat Tetratricopeptide repeat (TPR)-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017179
Physical Location & Seq
Reverse (-)
22965679 .. 22968641
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G225200.1

Sequence Viewer

Length: 1779 bp
ATGAAATCACAATTCCAGAAGAAAACCACCAAGAACACAGAGTCAGTATGCAGTAAACCTTCTTGTTTCTTCTGCACCATGAATGAGCCAGACCCCTCTCTCAGAAAAGCTAGAATCATCAAAGCCTTCCAAGATTTGCCTCTCAGGAATGACCAAGAACATGTCCTTGCACTAAGCAGCCTCTGGAACATAGCCATGATGCAGCCTAATGACCCTGAATTCCCATCTCTTGGAATCTTTGAATGCATGGCAAAGCTTATTCACAAAGGCATCAATGACAAAAAGTGGCTGCTAAGCGACCAGAACATCTATATCCCCTACTATGCTGCCCATACTATTGGCTCTTACACCATGAACAAGGTTCGATTTGCAGAGAAGGCTGTAGAATCAGGGGTGGTTTTTCCATTAATTGAGCTGATGAGAGGTAAGATCACCTGGGTGGAGCAACGAGTGGCGGTTCGGGCTCTTGCTCATATAGCAAGCCATGAAAAGATCTTTGAAGAAGCCATTGGTGTAAATGAAGTGGAGATTGTAGAATTAGCCATGAAGATAGCCATGACCTGCCCCAAAGAGGTGTTTGATAAGTTTGTTGGCTTGGAACCTTCAAAAAGATTGAAGTACCATTGCGATTTGGTTACAAGAGGGCTTGGAGGGTTGGAAATTGAGGACAGAAAGGCAGAGGAATGGGCTAGCCAACTTCAGTGCTGGTCCCTCAATCTTCTCAACCGCTTTGCATGCAAAGAAAAGTCTCTGAATTTGATCTGCAAGAGAGAATTCTTGATTGATTTGTGCGGAATGTGGGGTGGTTTAGCAAACCCAACTTCACCTGCTGTGATTAGGCTGTTGAGATCACTTTGTCAAACCAAAATTGGAAGACAAAGTGTAGCAAATTTACAAGAAGTCATAAAGGCACTCTGCAACCTCTCAAGGTCCTCAGATGATTGGCAGCTGATGGCCATTGATTGTCTTCTGCTACTCCTCAAAGACCCGGAAACCAGACATAAAGCCATGGAGACTTCAGTTGTGTTTCTTGTTGATCTGGTTGAGCTTAGAAGTATTGGAGGAAGACCAAAAGTTGGAGACACAATCACACAGGCTCTATTACAAGATTACCATAAAATCAAGTATGGGGACTTGAAATTCCAGAGGAAGAAAGTTGAGAGAGCTTTGAAGGAGACATGGGATTTGAAGGTTGACAGAAAAAGGAGGGAGAAGTTGATGTCTGAACAAGAAATCGGAGAGAGAAAATCAATGGTGAGACAGCTGAAACAAGAAGGAAATCTAAACTTCTGGTCTGGGAACATAGAAAAGGCTGTGATGGAGTACACAGAAGCCTTGCATATGTGCCCATTAAAGATGAGAAAAGACAGGCTTGTGCTCCATAGCAACAGAGCTCAGTGTTACTTGCTGCTGAGGAACCCAGAGGCCGTCATCAGTGACACAACCATAGCTCTGTGCTTATCCAGTGCAGTGAGCCCTCATGGTAAGAGCCTGTGGAGAAGATCACAGGCTTATGACATGAAAGGGTTGGCAAAAGAGAGCTTGATTGACTGCGTAACATTTGTTCATGGCCGTATGAAGTCCGGCCAAACCGAAAGGGCAGAAATCCCAAGCTACGCGGCACGTATGATTAACAAGCAAATGAATAAAACTTGGTTATTTGCTCCCGCCAAGTCCAGGAGTTTTAACAACCATGAAGAGTTATTAGAATCTCATGGCCTCAGCAGGCCTACCGTTGTAGATGAAACGATTGCTGAAAAAAGATGGAGAAAGCTATAA

Protein Analysis

593

Amino Acids

67.88

Weight (kDa)

9.2

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50030
fragaria_vesca FvH4_1g17090
malus_domestica MD15G1292100.v1.1
prunus_persica Prupe.6G225200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107261
rosa_laevigata RLG00000017565
rosa_multiflora Rmu_sc0006416.1_g000025
rosa_rugosa Rorug02G0141400
rosa_samantha Rh2AG192100 Rh2BG204000 Rh2CG197400 Rh2DG199400
rosa_wichuraiana Rw2G015200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 835
Acc36I ACCTGC 2 cut(s) 569, 835
AccB7I CCANNNNNTGG 2 cut(s) 230, 1076
AccII CGCG 1 cut(s) 1619
AciI CCGC 5 cut(s) 455, 727, 792, 1619, 1668
AcoI YGGCCR 3 cut(s) 954, 1570, 1585
AcsI RAATTY 5 cut(s) 218, 754, 773, 889, 1139
AcuI CTGAAG 2 cut(s) 683, 1002
AfaI GTAC 2 cut(s) 620, 1325
AfiI CCNNNNNNNGG 4 cut(s) 230, 571, 1076, 1677
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 7 cut(s) 242, 500, 606, 616, 1138, 1171, 1189
AjnI CCWGG 2 cut(s) 434, 1676
AjuI GAANNNNNNNTTGG 2 cut(s) 492, 524
AleI CACNNNNGTG 1 cut(s) 437
Alw21I GWGCWC 2 cut(s) 1380, 1396
Alw26I GTCTC 5 cut(s) 753, 1007, 1074, 1169, 1252
AlwNI CAGNNNCTG 1 cut(s) 183
AoxI GGCC 6 cut(s) 954, 1425, 1570, 1585, 1717, 1727
ApeKI GCWGC 6 cut(s) 177, 202, 289, 326, 946, 1408
ApoI RAATTY 5 cut(s) 218, 754, 773, 889, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 1168, 1200
AseI ATTAAT 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 708, 930
AsuC2I CCSGG 1 cut(s) 989
AsuHPI GGTGA 3 cut(s) 424, 816, 1267
AsuNHI GCTAGC 1 cut(s) 689
AvaII GGWCC 2 cut(s) 708, 930
BaeGI GKGCMC 1 cut(s) 1349
BalI TGGCCA 1 cut(s) 956
BanII GRGCYC 3 cut(s) 466, 1396, 1478
BbsI GAAGAC 3 cut(s) 880, 959, 1072
Bbv12I GWGCWC 2 cut(s) 1380, 1396
BbvCI CCTCAGC 2 cut(s) 1412, 1721
BbvI GCAGC 6 cut(s) 189, 214, 276, 313, 958, 1395
BccI CCATC 4 cut(s) 232, 946, 1312, 1758
BceAI ACGGC 2 cut(s) 1412, 1557
BciT130I CCWGG 2 cut(s) 436, 1678
BcnI CCSGG 1 cut(s) 989
BcoDI GTCTC 5 cut(s) 753, 1007, 1074, 1169, 1252
BfaI CTAG 2 cut(s) 111, 690
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 2 cut(s) 569, 835
BglII AGATCT 1 cut(s) 492
BisI GCNGC 7 cut(s) 178, 203, 290, 327, 947, 1409, 1620
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 7 cut(s) 179, 204, 291, 328, 948, 1410, 1621
Bme1390I CCNGG 3 cut(s) 436, 989, 1678
Bme18I GGWCC 2 cut(s) 708, 930
BmgT120I GGNCC 2 cut(s) 708, 930
BmiI GGNNCC 3 cut(s) 600, 710, 1418
BmrFI CCNGG 3 cut(s) 436, 989, 1678
BmsI GCATC 2 cut(s) 189, 279
BmtI GCTAGC 1 cut(s) 693
BpiI GAAGAC 3 cut(s) 880, 959, 1072
Bpu10I CCTNAGC 2 cut(s) 1412, 1721
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 1 cut(s) 989
BsaAI YACGTR 1 cut(s) 1625
BsaJI CCNNGG 2 cut(s) 435, 1008
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 571, 1076, 1677
Bse1I ACTGG 1 cut(s) 1464
Bse3DI GCAATG 1 cut(s) 622
BseBI CCWGG 2 cut(s) 436, 1678
BseDI CCNNGG 2 cut(s) 435, 1008
BseLI CCNNNNNNNGG 4 cut(s) 230, 571, 1076, 1677
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 6 cut(s) 115, 157, 948, 1403, 1409, 1735
BseNI ACTGG 1 cut(s) 1464
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 1 cut(s) 1349
BseXI GCAGC 6 cut(s) 189, 214, 276, 313, 958, 1395
BsgI GTGCAG 2 cut(s) 58, 1488
Bsh1236I CGCG 1 cut(s) 1619
BshFI GGCC 6 cut(s) 956, 1427, 1572, 1587, 1719, 1729
BsiHKAI GWGCWC 2 cut(s) 1380, 1396
BsiSI CCGG 2 cut(s) 989, 1584
BslFI GGGAC 2 cut(s) 694, 1145
BslI CCNNNNNNNGG 4 cut(s) 230, 571, 1076, 1677
BsmAI GTCTC 5 cut(s) 753, 1007, 1074, 1169, 1252
BsmFI GGGAC 2 cut(s) 694, 1145
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 6 cut(s) 956, 1427, 1572, 1587, 1719, 1729
Bsp1286I GDGCHC 5 cut(s) 466, 1349, 1380, 1396, 1478
Bsp143I GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
Bsp1720I GCTNAGC 1 cut(s) 293
Bsp19I CCATGG 1 cut(s) 1008
BspACI CCGC 5 cut(s) 455, 727, 792, 1619, 1668
BspANI GGCC 6 cut(s) 956, 1427, 1572, 1587, 1719, 1729
BspCNI CTCAG 6 cut(s) 114, 156, 947, 1404, 1408, 1734
BspFNI CGCG 1 cut(s) 1619
BspLI GGNNCC 3 cut(s) 600, 710, 1418
BspMI ACCTGC 2 cut(s) 569, 835
BspOI GCTAGC 1 cut(s) 693
BsrDI GCAATG 1 cut(s) 622
BsrI ACTGG 1 cut(s) 1464
BssECI CCNNGG 2 cut(s) 435, 1008
BssMI GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
BssT1I CCWWGG 1 cut(s) 1008
Bst2UI CCWGG 2 cut(s) 436, 1678
Bst4CI ACNGT 1 cut(s) 1735
Bst6I CTCTTC 1 cut(s) 1692
BstBAI YACGTR 1 cut(s) 1625
BstC8I GCNNGC 4 cut(s) 481, 691, 736, 1727
BstDEI CTNAG 9 cut(s) 101, 143, 173, 293, 934, 1049, 1395, 1412, 1721
BstDSI CCRYGG 1 cut(s) 1008
BstFNI CGCG 1 cut(s) 1619
BstKTI GATC 6 cut(s) 432, 495, 762, 851, 1039, 1505
BstMAI GTCTC 5 cut(s) 753, 1007, 1074, 1169, 1252
BstMBI GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
BstMWI GCNNNNNNNGC 4 cut(s) 377, 461, 476, 735
BstNI CCWGG 2 cut(s) 436, 1678
BstNSI RCATGY 2 cut(s) 164, 738
BstSCI CCNGG 3 cut(s) 434, 987, 1676
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 1349
BstUI CGCG 1 cut(s) 1619
BstV1I GCAGC 6 cut(s) 189, 214, 276, 313, 958, 1395
BstV2I GAAGAC 3 cut(s) 880, 959, 1072
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 6 cut(s) 956, 1427, 1572, 1587, 1719, 1729
BtgI CCRYGG 1 cut(s) 1008
BtsI GCAGTG 1 cut(s) 1476
BtsIMutI CAGTG 5 cut(s) 707, 1403, 1441, 1471, 1476
BveI ACCTGC 2 cut(s) 569, 835
Cac8I GCNNGC 4 cut(s) 481, 691, 736, 1727
CaiI CAGNNNCTG 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 708, 930
Csp6I GTAC 2 cut(s) 619, 1324
CviQI GTAC 2 cut(s) 619, 1324
DdeI CTNAG 9 cut(s) 101, 143, 173, 293, 934, 1049, 1395, 1412, 1721
DpnI GATC 6 cut(s) 431, 494, 761, 850, 1038, 1504
DpnII GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
EaeI YGGCCR 3 cut(s) 954, 1570, 1585
Eam1104I CTCTTC 1 cut(s) 1692
EarI CTCTTC 1 cut(s) 1692
Ecl136II GAGCTC 1 cut(s) 1394
Eco130I CCWWGG 1 cut(s) 1008
Eco147I AGGCCT 1 cut(s) 1729
Eco24I GRGCYC 3 cut(s) 466, 1396, 1478
Eco47I GGWCC 2 cut(s) 708, 930
Eco53kI GAGCTC 1 cut(s) 1394
Eco57I CTGAAG 2 cut(s) 683, 1002
EcoICRI GAGCTC 1 cut(s) 1394
EcoO109I RGGNCCY 1 cut(s) 930
EcoRI GAATTC 2 cut(s) 218, 773
EcoRII CCWGG 2 cut(s) 434, 1676
EcoT14I CCWWGG 1 cut(s) 1008
EcoT22I ATGCAT 1 cut(s) 248
EcoT38I GRGCYC 3 cut(s) 466, 1396, 1478
ErhI CCWWGG 1 cut(s) 1008
FalI AAGNNNNNCTT 2 cut(s) 1356, 1388
FaqI GGGAC 2 cut(s) 694, 1145
FauI CCCGC 1 cut(s) 1675
FauNDI CATATG 1 cut(s) 1341
Fnu4HI GCNGC 7 cut(s) 178, 203, 290, 327, 947, 1409, 1620
FriOI GRGCYC 3 cut(s) 466, 1396, 1478
Fsp4HI GCNGC 7 cut(s) 178, 203, 290, 327, 947, 1409, 1620
FspBI CTAG 2 cut(s) 111, 690
GluI GCNGC 7 cut(s) 178, 203, 290, 327, 947, 1409, 1620
HaeIII GGCC 6 cut(s) 956, 1427, 1572, 1587, 1719, 1729
HapII CCGG 2 cut(s) 989, 1584
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 5 cut(s) 41, 114, 234, 386, 1709
HpaII CCGG 2 cut(s) 989, 1584
HphI GGTGA 3 cut(s) 424, 816, 1267
Hpy166II GTNNAC 3 cut(s) 56, 1195, 1326
Hpy188I TCNGA 5 cut(s) 104, 753, 937, 1225, 1238
Hpy188III TCNNGA 5 cut(s) 16, 145, 184, 778, 1144
Hpy8I GTNNAC 3 cut(s) 56, 1195, 1326
HpyAV CCTTC 7 cut(s) 69, 136, 370, 612, 1165, 1183, 1268
HpyCH4III ACNGT 1 cut(s) 1735
HpyCH4IV ACGT 1 cut(s) 1624
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 461, 476, 735
HpyF3I CTNAG 9 cut(s) 101, 143, 173, 293, 934, 1049, 1395, 1412, 1721
HpySE526I ACGT 1 cut(s) 1624
Kzo9I GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
LmnI GCTCC 3 cut(s) 442, 1383, 1669
Lsp1109I GCAGC 6 cut(s) 189, 214, 276, 313, 958, 1395
LweI GCATC 2 cut(s) 189, 279
MaeI CTAG 2 cut(s) 111, 690
MaeII ACGT 1 cut(s) 1624
MaeIII GTNAC 4 cut(s) 634, 1400, 1436, 1555
MalI GATC 6 cut(s) 431, 494, 761, 850, 1038, 1504
MboI GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 5 cut(s) 466, 1349, 1380, 1396, 1478
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 636, 1057
Mox20I TGGCCA 1 cut(s) 956
Mph1103I ATGCAT 1 cut(s) 248
MscI TGGCCA 1 cut(s) 956
MseI TTAA 4 cut(s) 407, 1352, 1632, 1686
MslI CAYNNNNRTG 2 cut(s) 194, 437
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 2 cut(s) 949, 1264
MspI CCGG 2 cut(s) 989, 1584
MspR9I CCNGG 3 cut(s) 436, 989, 1678
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 2 cut(s) 436, 1678
MvnI CGCG 1 cut(s) 1619
MwoI GCNNNNNNNGC 4 cut(s) 377, 461, 476, 735
NciI CCSGG 1 cut(s) 989
NcoI CCATGG 1 cut(s) 1008
NdeI CATATG 1 cut(s) 1341
NdeII GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
NheI GCTAGC 1 cut(s) 689
NlaIV GGNNCC 3 cut(s) 600, 710, 1418
NmuCI GTSAC 1 cut(s) 1436
NsiI ATGCAT 1 cut(s) 248
NspI RCATGY 2 cut(s) 164, 738
OliI CACNNNNGTG 1 cut(s) 437
PaeI GCATGC 1 cut(s) 738
PaqCI CACCTGC 1 cut(s) 835
PceI AGGCCT 1 cut(s) 1729
PciI ACATGT 1 cut(s) 160
PctI GAATGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 114, 234, 386, 1709
PflMI CCANNNNNTGG 2 cut(s) 230, 1076
PfoI TCCNGGA 1 cut(s) 1676
PkrI GCNGC 7 cut(s) 179, 204, 291, 328, 948, 1410, 1621
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 1625
PpuMI RGGWCCY 1 cut(s) 930
PscI ACATGT 1 cut(s) 160
PshBI ATTAAT 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 1396
Psp5II RGGWCCY 1 cut(s) 930
Psp6I CCWGG 2 cut(s) 434, 1676
PspGI CCWGG 2 cut(s) 434, 1676
PspN4I GGNNCC 3 cut(s) 600, 710, 1418
PspPI GGNCC 2 cut(s) 708, 930
PspPPI RGGWCCY 1 cut(s) 930
PsrI GAACNNNNNNTAC 2 cut(s) 1548, 1580
PstNI CAGNNNCTG 1 cut(s) 183
PsuI RGATCY 1 cut(s) 492
PvuII CAGCTG 2 cut(s) 949, 1264
RsaI GTAC 2 cut(s) 620, 1325
RsaNI GTAC 2 cut(s) 619, 1324
RseI CAYNNNNRTG 2 cut(s) 194, 437
SacI GAGCTC 1 cut(s) 1396
SaqAI TTAA 4 cut(s) 407, 1352, 1632, 1686
SatI GCNGC 7 cut(s) 178, 203, 290, 327, 947, 1409, 1620
Sau3AI GATC 6 cut(s) 429, 492, 759, 848, 1036, 1502
Sau96I GGNCC 2 cut(s) 708, 930
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 3 cut(s) 436, 989, 1678
SduI GDGCHC 5 cut(s) 466, 1349, 1380, 1396, 1478
SfaNI GCATC 2 cut(s) 189, 279
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 2 cut(s) 708, 930
SmiMI CAYNNNNRTG 2 cut(s) 194, 437
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
SphI GCATGC 1 cut(s) 738
SseBI AGGCCT 1 cut(s) 1729
SsiI CCGC 5 cut(s) 455, 727, 792, 1619, 1668
SspMI CTAG 2 cut(s) 111, 690
SstI GAGCTC 1 cut(s) 1396
StuI AGGCCT 1 cut(s) 1729
StyD4I CCNGG 3 cut(s) 434, 987, 1676
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 1 cut(s) 1735
TaiI ACGT 1 cut(s) 1627
TaqI TCGA 1 cut(s) 364
TatI WGTACW 1 cut(s) 1323
TauI GCSGC 1 cut(s) 1622
TfiI GAWTC 4 cut(s) 114, 234, 386, 1709
Tru1I TTAA 4 cut(s) 407, 1352, 1632, 1686
Tru9I TTAA 4 cut(s) 407, 1352, 1632, 1686
TscAI CASTG 5 cut(s) 707, 1403, 1441, 1471, 1476
TseFI GTSAC 1 cut(s) 1436
TseI GCWGC 6 cut(s) 177, 202, 289, 326, 946, 1408
Tsp45I GTSAC 1 cut(s) 1436
TspRI CASTG 5 cut(s) 707, 1403, 1441, 1471, 1476
Van91I CCANNNNNTGG 2 cut(s) 230, 1076
VpaK11BI GGWCC 2 cut(s) 708, 930
VspI ATTAAT 1 cut(s) 407
XapI RAATTY 5 cut(s) 218, 754, 773, 889, 1139
XceI RCATGY 2 cut(s) 164, 738
XspI CTAG 2 cut(s) 111, 690
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.