ARM-repeat Tetratricopeptide repeat (TPR)-like protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 67 - 234 | 2e-52 | TIR domain |
| TIR_2 | PF13676 | 69 - 169 | 2.4e-18 | TIR domain |
| TIR | PF01582 | 254 - 384 | 3.8e-26 | TIR domain |
| TIR_2 | PF13676 | 257 - 351 | 4e-10 | TIR domain |
| NB-ARC | PF00931 | 465 - 621 | 3e-15 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 688 - 758 | 2.1e-20 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 947 - 1034 | 8.2e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 954 - 1203 | 1.3e-11 | Leucine-rich repeat region |
| C-JID | PF20160 | 1243 - 1392 | 1.5e-20 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2103 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2759 |
| AccI | GTMKAC | 3 cut(s) | 1038, 1280, 1574 |
| AciI | CCGC | 5 cut(s) | 222, 1348, 1667, 1868, 4146 |
| AclWI | GGATC | 7 cut(s) | 485, 498, 892, 1084, 2127, 2671, 2881 |
| AcoI | YGGCCR | 2 cut(s) | 103, 3883 |
| AcsI | RAATTY | 5 cut(s) | 242, 1254, 1690, 2745, 3741 |
| AcuI | CTGAAG | 6 cut(s) | 1893, 2021, 2354, 3607, 3692, 4151 |
| AdeI | CACNNNGTG | 1 cut(s) | 2329 |
| AfaI | GTAC | 7 cut(s) | 1188, 1299, 1365, 1398, 1647, 3852, 4182 |
| AfeI | AGCGCT | 1 cut(s) | 2975 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 803, 1995, 2165, 2759, 3469, 3945 |
| AflII | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| AjnI | CCWGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| Alw21I | GWGCWC | 1 cut(s) | 3864 |
| Alw26I | GTCTC | 6 cut(s) | 1093, 1543, 2277, 2313, 2436, 2492 |
| AlwI | GGATC | 7 cut(s) | 485, 498, 892, 1084, 2127, 2671, 2881 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1610 |
| Ama87I | CYCGRG | 2 cut(s) | 1449, 4116 |
| Aor51HI | AGCGCT | 1 cut(s) | 2975 |
| AoxI | GGCC | 7 cut(s) | 103, 517, 1717, 2476, 2983, 3883, 4121 |
| ApeKI | GCWGC | 6 cut(s) | 1491, 1921, 3360, 3645, 3930, 4064 |
| ApoI | RAATTY | 5 cut(s) | 242, 1254, 1690, 2745, 3741 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 145, 177, 3055, 3087 |
| AseI | ATTAAT | 1 cut(s) | 3042 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 1554, 2259, 2358, 3210, 3677, 3714 |
| AspLEI | GCGC | 1 cut(s) | 2976 |
| AspS9I | GGNCC | 7 cut(s) | 517, 794, 1518, 2464, 3231, 4121, 4150 |
| AsuHPI | GGTGA | 6 cut(s) | 1787, 1832, 2383, 3356, 4016, 4147 |
| AvaI | CYCGRG | 2 cut(s) | 1449, 4116 |
| AvaII | GGWCC | 5 cut(s) | 794, 1518, 2464, 3231, 4150 |
| AxyI | CCTNAGG | 1 cut(s) | 3687 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1178, 1211, 1384, 1417 |
| BalI | TGGCCA | 2 cut(s) | 105, 3885 |
| BamHI | GGATCC | 1 cut(s) | 490 |
| BbsI | GAAGAC | 2 cut(s) | 2322, 3680 |
| Bbv12I | GWGCWC | 1 cut(s) | 3864 |
| BbvI | GCAGC | 6 cut(s) | 1478, 1908, 3372, 3632, 3917, 4051 |
| BceAI | ACGGC | 1 cut(s) | 1082 |
| BciT130I | CCWGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| BciVI | GTATCC | 2 cut(s) | 2516, 4054 |
| BclI | TGATCA | 1 cut(s) | 114 |
| BcoDI | GTCTC | 6 cut(s) | 1093, 1543, 2277, 2313, 2436, 2492 |
| BfaI | CTAG | 4 cut(s) | 833, 1535, 2057, 3243 |
| BfmI | CTRYAG | 4 cut(s) | 1575, 3159, 3646, 4065 |
| BfoI | RGCGCY | 1 cut(s) | 2977 |
| BfrI | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| BfuI | GTATCC | 2 cut(s) | 2516, 4054 |
| BglII | AGATCT | 1 cut(s) | 2716 |
| BisI | GCNGC | 6 cut(s) | 1492, 1922, 3361, 3646, 3931, 4065 |
| BlsI | GCNGC | 6 cut(s) | 1493, 1923, 3362, 3647, 3932, 4066 |
| BmcAI | AGTACT | 1 cut(s) | 1647 |
| Bme1390I | CCNGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| Bme18I | GGWCC | 5 cut(s) | 794, 1518, 2464, 3231, 4150 |
| BmeT110I | CYCGRG | 2 cut(s) | 1449, 4116 |
| BmgT120I | GGNCC | 7 cut(s) | 517, 794, 1518, 2464, 3231, 4121, 4150 |
| BmiI | GGNNCC | 4 cut(s) | 492, 518, 1948, 4151 |
| BmrFI | CCNGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2145 |
| BpiI | GAAGAC | 2 cut(s) | 2322, 3680 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 583, 615, 921, 953, 3209, 3241 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2343 |
| BpuEI | CTTGAG | 8 cut(s) | 332, 591, 896, 1955, 2795, 2857, 3434, 4118 |
| Bsa29I | ATCGAT | 2 cut(s) | 93, 2028 |
| BsaAI | YACGTR | 2 cut(s) | 1367, 1400 |
| BsaBI | GATNNNNATC | 3 cut(s) | 89, 489, 649 |
| BsaI | GGTCTC | 2 cut(s) | 1093, 2313 |
| BsaJI | CCNNGG | 9 cut(s) | 453, 784, 1414, 1720, 2115, 2758, 2994, 3865, 4117 |
| BsaWI | WCCGGW | 3 cut(s) | 1102, 2011, 2410 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 803, 1995, 2165, 2759, 3469, 3945 |
| Bse118I | RCCGGY | 1 cut(s) | 472 |
| Bse1I | ACTGG | 6 cut(s) | 399, 1034, 1344, 1715, 1810, 2142 |
| Bse21I | CCTNAGG | 1 cut(s) | 3687 |
| Bse3DI | GCAATG | 1 cut(s) | 3564 |
| Bse8I | GATNNNNATC | 3 cut(s) | 89, 489, 649 |
| BseBI | CCWGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| BseCI | ATCGAT | 2 cut(s) | 93, 2028 |
| BseDI | CCNNGG | 9 cut(s) | 453, 784, 1414, 1720, 2115, 2758, 2994, 3865, 4117 |
| BseJI | GATNNNNATC | 3 cut(s) | 89, 489, 649 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 803, 1995, 2165, 2759, 3469, 3945 |
| BseMI | GCAATG | 1 cut(s) | 3564 |
| BseMII | CTCAG | 7 cut(s) | 226, 912, 2414, 2436, 2883, 3701, 3738 |
| BseNI | ACTGG | 6 cut(s) | 399, 1034, 1344, 1715, 1810, 2142 |
| BseRI | GAGGAG | 8 cut(s) | 726, 729, 732, 735, 738, 741, 935, 2498 |
| BseXI | GCAGC | 6 cut(s) | 1478, 1908, 3372, 3632, 3917, 4051 |
| BseYI | CCCAGC | 1 cut(s) | 2250 |
| BsgI | GTGCAG | 2 cut(s) | 602, 1192 |
| BshFI | GGCC | 7 cut(s) | 105, 519, 1719, 2478, 2985, 3885, 4123 |
| BshVI | ATCGAT | 2 cut(s) | 93, 2028 |
| BsiHKAI | GWGCWC | 1 cut(s) | 3864 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1449, 4116 |
| BsiSI | CCGG | 4 cut(s) | 473, 1103, 2012, 2411 |
| BsiWI | CGTACG | 1 cut(s) | 1396 |
| BslFI | GGGAC | 3 cut(s) | 471, 1157, 3040 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 803, 1995, 2165, 2759, 3469, 3945 |
| BsmAI | GTCTC | 6 cut(s) | 1093, 1543, 2277, 2313, 2436, 2492 |
| BsmFI | GGGAC | 3 cut(s) | 471, 1157, 3040 |
| BsmI | GAATGC | 6 cut(s) | 847, 1350, 1425, 1572, 2344, 3706 |
| BsnI | GGCC | 7 cut(s) | 105, 519, 1719, 2478, 2985, 3885, 4123 |
| Bso31I | GGTCTC | 2 cut(s) | 1093, 2313 |
| BsoBI | CYCGRG | 2 cut(s) | 1449, 4116 |
| Bsp1286I | GDGCHC | 1 cut(s) | 3864 |
| Bsp1407I | TGTACA | 2 cut(s) | 1297, 4180 |
| Bsp19I | CCATGG | 4 cut(s) | 453, 784, 1414, 3865 |
| BspACI | CCGC | 5 cut(s) | 222, 1348, 1667, 1868, 4146 |
| BspANI | GGCC | 7 cut(s) | 105, 519, 1719, 2478, 2985, 3885, 4123 |
| BspCNI | CTCAG | 7 cut(s) | 225, 911, 2413, 2435, 2884, 3700, 3739 |
| BspDI | ATCGAT | 2 cut(s) | 93, 2028 |
| BspHI | TCATGA | 3 cut(s) | 1354, 1705, 2311 |
| BspLI | GGNNCC | 4 cut(s) | 492, 518, 1948, 4151 |
| BspMAI | CTGCAG | 2 cut(s) | 3650, 4069 |
| BspPI | GGATC | 7 cut(s) | 485, 498, 892, 1084, 2127, 2671, 2881 |
| BspQI | GCTCTTC | 1 cut(s) | 1853 |
| BspTI | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| BspTNI | GGTCTC | 2 cut(s) | 1093, 2313 |
| BsrDI | GCAATG | 1 cut(s) | 3564 |
| BsrFI | RCCGGY | 1 cut(s) | 472 |
| BsrGI | TGTACA | 2 cut(s) | 1297, 4180 |
| BsrI | ACTGG | 6 cut(s) | 399, 1034, 1344, 1715, 1810, 2142 |
| BssAI | RCCGGY | 1 cut(s) | 472 |
| BssECI | CCNNGG | 9 cut(s) | 453, 784, 1414, 1720, 2115, 2758, 2994, 3865, 4117 |
| BssNAI | GTATAC | 1 cut(s) | 1281 |
| BssT1I | CCWWGG | 6 cut(s) | 453, 784, 1414, 2758, 2994, 3865 |
| Bst1107I | GTATAC | 1 cut(s) | 1281 |
| Bst2UI | CCWGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| Bst4CI | ACNGT | 7 cut(s) | 723, 1170, 1444, 1775, 2220, 2329, 3815 |
| Bst6I | CTCTTC | 2 cut(s) | 1853, 3033 |
| BstAFI | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 959, 1610, 2233 |
| BstAUI | TGTACA | 2 cut(s) | 1297, 4180 |
| BstBAI | YACGTR | 2 cut(s) | 1367, 1400 |
| BstC8I | GCNNGC | 7 cut(s) | 426, 705, 1637, 2095, 3555, 3887, 3981 |
| BstDSI | CCRYGG | 4 cut(s) | 453, 784, 1414, 3865 |
| BstH2I | RGCGCY | 1 cut(s) | 2977 |
| BstHHI | GCGC | 1 cut(s) | 2976 |
| BstMAI | GTCTC | 6 cut(s) | 1093, 1543, 2277, 2313, 2436, 2492 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 959, 1066, 1610, 2233, 2982, 3369, 3559, 3839 |
| BstNI | CCWGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| BstNSI | RCATGY | 1 cut(s) | 2097 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2145 |
| BstSCI | CCNGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| BstSFI | CTRYAG | 4 cut(s) | 1575, 3159, 3646, 4065 |
| BstSNI | TACGTA | 2 cut(s) | 1367, 1400 |
| BstV1I | GCAGC | 6 cut(s) | 1478, 1908, 3372, 3632, 3917, 4051 |
| BstV2I | GAAGAC | 2 cut(s) | 2322, 3680 |
| BstX2I | RGATCY | 5 cut(s) | 490, 1089, 2676, 2716, 2886 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 791 |
| BstYI | RGATCY | 5 cut(s) | 490, 1089, 2676, 2716, 2886 |
| BstZ17I | GTATAC | 1 cut(s) | 1281 |
| Bsu15I | ATCGAT | 2 cut(s) | 93, 2028 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3687 |
| BsuI | GTATCC | 2 cut(s) | 2516, 4054 |
| BsuRI | GGCC | 7 cut(s) | 105, 519, 1719, 2478, 2985, 3885, 4123 |
| BsuTUI | ATCGAT | 2 cut(s) | 93, 2028 |
| BtgI | CCRYGG | 4 cut(s) | 453, 784, 1414, 3865 |
| BtgZI | GCGATG | 1 cut(s) | 3534 |
| BtsI | GCAGTG | 2 cut(s) | 261, 2954 |
| BtsIMutI | CAGTG | 5 cut(s) | 261, 1175, 2216, 2408, 2954 |
| Cac8I | GCNNGC | 7 cut(s) | 426, 705, 1637, 2095, 3555, 3887, 3981 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1610 |
| CciI | TCATGA | 3 cut(s) | 1354, 1705, 2311 |
| CfoI | GCGC | 1 cut(s) | 2976 |
| Cfr10I | RCCGGY | 1 cut(s) | 472 |
| Cfr13I | GGNCC | 7 cut(s) | 517, 794, 1518, 2464, 3231, 4121, 4150 |
| ClaI | ATCGAT | 2 cut(s) | 93, 2028 |
| CseI | GACGC | 1 cut(s) | 280 |
| Csp6I | GTAC | 7 cut(s) | 1187, 1298, 1364, 1397, 1646, 3851, 4181 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 417, 452 |
| CviQI | GTAC | 7 cut(s) | 1187, 1298, 1364, 1397, 1646, 3851, 4181 |
| DraI | TTTAAA | 2 cut(s) | 562, 4111 |
| DraIII | CACNNNGTG | 1 cut(s) | 2329 |
| EaeI | YGGCCR | 2 cut(s) | 103, 3883 |
| Eam1104I | CTCTTC | 2 cut(s) | 1853, 3033 |
| EarI | CTCTTC | 2 cut(s) | 1853, 3033 |
| Eco105I | TACGTA | 2 cut(s) | 1367, 1400 |
| Eco130I | CCWWGG | 6 cut(s) | 453, 784, 1414, 2758, 2994, 3865 |
| Eco147I | AGGCCT | 1 cut(s) | 2478 |
| Eco31I | GGTCTC | 2 cut(s) | 1093, 2313 |
| Eco32I | GATATC | 1 cut(s) | 1027 |
| Eco47I | GGWCC | 5 cut(s) | 794, 1518, 2464, 3231, 4150 |
| Eco47III | AGCGCT | 1 cut(s) | 2975 |
| Eco57I | CTGAAG | 6 cut(s) | 1893, 2021, 2354, 3607, 3692, 4151 |
| Eco81I | CCTNAGG | 1 cut(s) | 3687 |
| Eco88I | CYCGRG | 2 cut(s) | 1449, 4116 |
| EcoRI | GAATTC | 1 cut(s) | 2745 |
| EcoRII | CCWGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| EcoRV | GATATC | 1 cut(s) | 1027 |
| EcoT14I | CCWWGG | 6 cut(s) | 453, 784, 1414, 2758, 2994, 3865 |
| EcoT22I | ATGCAT | 2 cut(s) | 2229, 3574 |
| ErhI | CCWWGG | 6 cut(s) | 453, 784, 1414, 2758, 2994, 3865 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 294, 326, 1539, 1571, 1542, 1574, 3697, 3729 |
| FaqI | GGGAC | 3 cut(s) | 471, 1157, 3040 |
| FauI | CCCGC | 2 cut(s) | 1355, 4139 |
| FbaI | TGATCA | 1 cut(s) | 114 |
| FblI | GTMKAC | 3 cut(s) | 1038, 1280, 1574 |
| Fnu4HI | GCNGC | 6 cut(s) | 1492, 1922, 3361, 3646, 3931, 4065 |
| Fsp4HI | GCNGC | 6 cut(s) | 1492, 1922, 3361, 3646, 3931, 4065 |
| FspBI | CTAG | 4 cut(s) | 833, 1535, 2057, 3243 |
| GlaI | GCGC | 1 cut(s) | 2975 |
| GluI | GCNGC | 6 cut(s) | 1492, 1922, 3361, 3646, 3931, 4065 |
| GsaI | CCCAGC | 1 cut(s) | 2254 |
| HaeII | RGCGCY | 1 cut(s) | 2977 |
| HaeIII | GGCC | 7 cut(s) | 105, 519, 1719, 2478, 2985, 3885, 4123 |
| HapII | CCGG | 4 cut(s) | 473, 1103, 2012, 2411 |
| HgaI | GACGC | 1 cut(s) | 280 |
| HhaI | GCGC | 1 cut(s) | 2976 |
| Hin6I | GCGC | 1 cut(s) | 2974 |
| HinP1I | GCGC | 1 cut(s) | 2974 |
| HincII | GTYRAC | 3 cut(s) | 726, 2185, 4094 |
| HindII | GTYRAC | 3 cut(s) | 726, 2185, 4094 |
| HindIII | AAGCTT | 3 cut(s) | 2774, 3422, 3452 |
| HpaII | CCGG | 4 cut(s) | 473, 1103, 2012, 2411 |
| HphI | GGTGA | 6 cut(s) | 1787, 1832, 2383, 3356, 4016, 4147 |
| Hpy99I | CGWCG | 1 cut(s) | 30 |
| HpyCH4III | ACNGT | 7 cut(s) | 723, 1170, 1444, 1775, 2220, 2329, 3815 |
| HpyCH4IV | ACGT | 5 cut(s) | 1366, 1395, 1399, 2293, 3654 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 959, 1066, 1610, 2233, 2982, 3369, 3559, 3839 |
| HpySE526I | ACGT | 5 cut(s) | 1366, 1395, 1399, 2293, 3654 |
| HspAI | GCGC | 1 cut(s) | 2974 |
| Ksp22I | TGATCA | 1 cut(s) | 114 |
| LguI | GCTCTTC | 1 cut(s) | 1853 |
| LmnI | GCTCC | 4 cut(s) | 1018, 2615, 3217, 3350 |
| Lsp1109I | GCAGC | 6 cut(s) | 1478, 1908, 3372, 3632, 3917, 4051 |
| MaeI | CTAG | 4 cut(s) | 833, 1535, 2057, 3243 |
| MaeII | ACGT | 5 cut(s) | 1366, 1395, 1399, 2293, 3654 |
| MaeIII | GTNAC | 5 cut(s) | 850, 1108, 3650, 3792, 3809 |
| MfeI | CAATTG | 5 cut(s) | 846, 1682, 2967, 3331, 3616 |
| MflI | RGATCY | 5 cut(s) | 490, 1089, 2676, 2716, 2886 |
| MhlI | GDGCHC | 1 cut(s) | 3864 |
| MlsI | TGGCCA | 2 cut(s) | 105, 3885 |
| MluNI | TGGCCA | 2 cut(s) | 105, 3885 |
| MlyI | GAGTC | 5 cut(s) | 932, 1214, 2279, 2824, 3294 |
| MmeI | TCCRAC | 3 cut(s) | 655, 2232, 2881 |
| Mox20I | TGGCCA | 2 cut(s) | 105, 3885 |
| Mph1103I | ATGCAT | 2 cut(s) | 2229, 3574 |
| MroXI | GAANNNNTTC | 6 cut(s) | 1554, 2259, 2358, 3210, 3677, 3714 |
| MscI | TGGCCA | 2 cut(s) | 105, 3885 |
| MslI | CAYNNNNRTG | 6 cut(s) | 42, 789, 973, 1470, 2372, 3765 |
| Msp20I | TGGCCA | 2 cut(s) | 105, 3885 |
| MspA1I | CMGCKG | 3 cut(s) | 222, 703, 1192 |
| MspCI | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| MspI | CCGG | 4 cut(s) | 473, 1103, 2012, 2411 |
| MspR9I | CCNGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| MunI | CAATTG | 5 cut(s) | 846, 1682, 2967, 3331, 3616 |
| Mva1269I | GAATGC | 6 cut(s) | 847, 1350, 1425, 1572, 2344, 3706 |
| MvaI | CCWGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 959, 1066, 1610, 2233, 2982, 3369, 3559, 3839 |
| NcoI | CCATGG | 4 cut(s) | 453, 784, 1414, 3865 |
| NlaIV | GGNNCC | 4 cut(s) | 492, 518, 1948, 4151 |
| NmeAIII | GCCGAG | 1 cut(s) | 2291 |
| NsiI | ATGCAT | 2 cut(s) | 2229, 3574 |
| NspI | RCATGY | 1 cut(s) | 2097 |
| PaeI | GCATGC | 1 cut(s) | 2097 |
| PagI | TCATGA | 3 cut(s) | 1354, 1705, 2311 |
| PceI | AGGCCT | 1 cut(s) | 2478 |
| PciSI | GCTCTTC | 1 cut(s) | 1853 |
| PctI | GAATGC | 6 cut(s) | 847, 1350, 1425, 1572, 2344, 3706 |
| PdmI | GAANNNNTTC | 6 cut(s) | 1554, 2259, 2358, 3210, 3677, 3714 |
| Pfl23II | CGTACG | 1 cut(s) | 1396 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2759 |
| PfoI | TCCNGGA | 1 cut(s) | 3730 |
| PkrI | GCNGC | 6 cut(s) | 1493, 1923, 3362, 3647, 3932, 4066 |
| PleI | GAGTC | 5 cut(s) | 931, 1214, 2278, 2823, 3294 |
| PpsI | GAGTC | 5 cut(s) | 931, 1214, 2278, 2823, 3294 |
| Ppu21I | YACGTR | 2 cut(s) | 1367, 1400 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2145 |
| PshBI | ATTAAT | 1 cut(s) | 3042 |
| PsiI | TTATAA | 1 cut(s) | 2103 |
| Psp6I | CCWGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| PspFI | CCCAGC | 1 cut(s) | 2250 |
| PspGI | CCWGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| PspLI | CGTACG | 1 cut(s) | 1396 |
| PspN4I | GGNNCC | 4 cut(s) | 492, 518, 1948, 4151 |
| PspPI | GGNCC | 7 cut(s) | 517, 794, 1518, 2464, 3231, 4121, 4150 |
| PstI | CTGCAG | 2 cut(s) | 3650, 4069 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1610 |
| PsuI | RGATCY | 5 cut(s) | 490, 1089, 2676, 2716, 2886 |
| PvuII | CAGCTG | 2 cut(s) | 703, 1192 |
| RsaI | GTAC | 7 cut(s) | 1188, 1299, 1365, 1398, 1647, 3852, 4182 |
| RsaNI | GTAC | 7 cut(s) | 1187, 1298, 1364, 1397, 1646, 3851, 4181 |
| RseI | CAYNNNNRTG | 6 cut(s) | 42, 789, 973, 1470, 2372, 3765 |
| SapI | GCTCTTC | 1 cut(s) | 1853 |
| SatI | GCNGC | 6 cut(s) | 1492, 1922, 3361, 3646, 3931, 4065 |
| Sau96I | GGNCC | 7 cut(s) | 517, 794, 1518, 2464, 3231, 4121, 4150 |
| ScaI | AGTACT | 1 cut(s) | 1647 |
| SchI | GAGTC | 5 cut(s) | 932, 1214, 2279, 2824, 3294 |
| ScrFI | CCNGG | 6 cut(s) | 1721, 2116, 2286, 3732, 4010, 4125 |
| SduI | GDGCHC | 1 cut(s) | 3864 |
| SfcI | CTRYAG | 4 cut(s) | 1575, 3159, 3646, 4065 |
| SinI | GGWCC | 5 cut(s) | 794, 1518, 2464, 3231, 4150 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 42, 789, 973, 1470, 2372, 3765 |
| SnaBI | TACGTA | 2 cut(s) | 1367, 1400 |
| SphI | GCATGC | 1 cut(s) | 2097 |
| SseBI | AGGCCT | 1 cut(s) | 2478 |
| SsiI | CCGC | 5 cut(s) | 222, 1348, 1667, 1868, 4146 |
| SspI | AATATT | 2 cut(s) | 997, 2079 |
| SspMI | CTAG | 4 cut(s) | 833, 1535, 2057, 3243 |
| StuI | AGGCCT | 1 cut(s) | 2478 |
| StyD4I | CCNGG | 6 cut(s) | 1719, 2114, 2284, 3730, 4008, 4123 |
| StyI | CCWWGG | 6 cut(s) | 453, 784, 1414, 2758, 2994, 3865 |
| TaaI | ACNGT | 7 cut(s) | 723, 1170, 1444, 1775, 2220, 2329, 3815 |
| TaiI | ACGT | 5 cut(s) | 1369, 1398, 1402, 2296, 3657 |
| TaqII | GACCGA | 1 cut(s) | 3746 |
| TatI | WGTACW | 4 cut(s) | 1297, 1645, 3850, 4180 |
| TscAI | CASTG | 5 cut(s) | 268, 1175, 2223, 2408, 2961 |
| TseI | GCWGC | 6 cut(s) | 1491, 1921, 3360, 3645, 3930, 4064 |
| TspGWI | ACGGA | 1 cut(s) | 1127 |
| TspRI | CASTG | 5 cut(s) | 268, 1175, 2223, 2408, 2961 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2759 |
| Vha464I | CTTAAG | 4 cut(s) | 908, 2879, 2977, 3488 |
| VpaK11BI | GGWCC | 5 cut(s) | 794, 1518, 2464, 3231, 4150 |
| VspI | ATTAAT | 1 cut(s) | 3042 |
| XapI | RAATTY | 5 cut(s) | 242, 1254, 1690, 2745, 3741 |
| XbaI | TCTAGA | 1 cut(s) | 3242 |
| XceI | RCATGY | 1 cut(s) | 2097 |
| XmiI | GTMKAC | 3 cut(s) | 1038, 1280, 1574 |
| XmnI | GAANNNNTTC | 6 cut(s) | 1554, 2259, 2358, 3210, 3677, 3714 |
| XspI | CTAG | 4 cut(s) | 833, 1535, 2057, 3243 |
| ZrmI | AGTACT | 1 cut(s) | 1647 |
| Zsp2I | ATGCAT | 2 cut(s) | 2229, 3574 |