Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

17980828 .. 17981483

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1197700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGCGCTTGTGCTACAGGCTGCTCGAGCGCTGTCTGGGGTTGCGATTTGGTGCTGGAGGCGGCGGAGATGGGCTTTGGCACATGGACTTGAAGCCCTACGCCTCCGGTAACTACTCGATTGCTGTGGTTCAGGCCAATTCGAATTTGGAGGATCAAGGTCAGGTCTTCACCTCGCCCTCTGCGACGTATGTTCCCAATCTGGGGGACTCTAGAGCAGTCCTTGGCCGGAGAGTTTCAAATAGTAAAAGGAGTCCAGTAGTGGCAAAACGCATGTCCACTTATCACAATATGGGAGTTGAGGAGGTCAGGAAGGAGGTCGAAGCACTACATCCCGATGATTCACATGTTATGGTGTATACTCGTGGAGTTTGGAGGATAAAAGGAATAATTCAGGTACAATGGGATTCATTTAATGGAGCTGAGGTTTGTTCTTGTGTTGACGGTAGAGCTTCAGCGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

155

Amino Acids

16.96

Weight (kDa)

8.75

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	359
AciI	CCGC	2 cut(s)	63, 66
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	399
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	203, 204
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	94, 240
AluBI	AGCT	2 cut(s)	422, 452
AluI	AGCT	2 cut(s)	422, 452
AlwI	GGATC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	2 cut(s)	135, 226
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	145
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspLEI	GCGC	2 cut(s)	9, 33
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	26
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	16
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	2 cut(s)	23, 64
BlsI	GCNGC	2 cut(s)	24, 65
BmeT110I	CYCGRG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 204
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	2 cut(s)	203, 204
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	9
BshFI	GGCC	2 cut(s)	137, 228
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	108, 229
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	203, 204
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	137, 228
BsoBI	CYCGRG	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	63, 66
BspANI	GGCC	2 cut(s)	137, 228
BspCNI	CTCAG	1 cut(s)	415
BspPI	GGATC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	154
BssNAI	GTATAC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	223
Bst1107I	GTATAC	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	2 cut(s)	9, 33
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNSI	RCATGY	2 cut(s)	277, 350
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	160
BstZ17I	GTATAC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	137, 228
BtsCI	GGATG	1 cut(s)	331
CfoI	GCGC	2 cut(s)	9, 33
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	85, 274, 347
CviJI	RGCY	7 cut(s)	22, 76, 97, 137, 228, 422, 452
CviKI_1	RGCY	7 cut(s)	22, 76, 97, 137, 228, 422, 452
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	226
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	223
Eco47III	AGCGCT	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	438
Eco88I	CYCGRG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	3 cut(s)	88, 277, 350
FaiI	YATR	8 cut(s)	86, 192, 275, 293, 348, 353, 360, 463
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	3 cut(s)	84, 273, 346
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	23, 64
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	23, 64
FspBI	CTAG	1 cut(s)	213
GlaI	GCGC	2 cut(s)	8, 32
GluI	GCNGC	2 cut(s)	23, 64
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	137, 228
HapII	CCGG	2 cut(s)	108, 229
HhaI	GCGC	2 cut(s)	9, 33
Hin1II	CATG	3 cut(s)	88, 277, 350
Hin6I	GCGC	2 cut(s)	7, 31
HinP1I	GCGC	2 cut(s)	7, 31
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HinfI	GANTC	4 cut(s)	209, 253, 341, 407
HpaII	CCGG	2 cut(s)	108, 229
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	3 cut(s)	279, 360, 442
Hpy188III	TCNNGA	3 cut(s)	213, 310, 335
Hpy8I	GTNNAC	3 cut(s)	279, 360, 442
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	88, 277, 350
HspAI	GCGC	2 cut(s)	7, 31
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	9
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	160
MluCI	AATT	3 cut(s)	139, 145, 390
MlyI	GAGTC	2 cut(s)	203, 262
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	108, 229
MwoI	GCNNNNNNNGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	88, 277, 350
NspI	RCATGY	2 cut(s)	277, 350
NspV	TTCGAA	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	26
PciI	ACATGT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	341, 407
PkrI	GCNGC	2 cut(s)	24, 65
PleI	GAGTC	2 cut(s)	203, 261
PpsI	GAGTC	2 cut(s)	203, 261
PscI	ACATGT	1 cut(s)	346
PspXI	VCTCGAGB	1 cut(s)	26
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	2 cut(s)	23, 64
Sau3AI	GATC	1 cut(s)	154
SchI	GAGTC	2 cut(s)	203, 262
SfcI	CTRYAG	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	26
SfuI	TTCGAA	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	3 cut(s)	139, 145, 390
SsiI	CCGC	2 cut(s)	63, 66
SspMI	CTAG	1 cut(s)	213
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	4 cut(s)	27, 119, 143, 321
TasI	AATT	3 cut(s)	139, 145, 390
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	341, 407
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	399
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	212
XceI	RCATGY	2 cut(s)	277, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.