Rorug02G0141500

protein phosphatase 2C 78

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001678
Physical Location & Seq
Reverse (-)
12433663 .. 12437282
3620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0141500.1

Sequence Viewer

Length: 2439 bp
ATGGAGAATAACTTTTCAAGGCATAGCAGAACTTCTCAGACCTCACTGAAGACCCGGCGCAGTGGTTATGAACCATCTGACAACGAGACTGATTTCCTAGAAACGCCGTGGCATGGCCACAATAGGAAGATCAGTGGAGGCTTAGAATCTGAGGTGACAAAAGCTGCAGGGTTGGAGTTGGCAAGAAACATTAGCCCTTTCAAACATAGCCGGAGGCACTCTTCCAGGTTTGAATATGATGCTTCTTCTGCAAGAAATGATGCAGTAGTAAGCCCGGTCCGAAGAAGAACCAGCAGTAAGTCACCATACAAGCAAAGAAGAGAAGATGGTACTGTTCGTTCACCAATAGCAGGTGTTGAAACTCACAGAAATATCAGTCCCTTGTCAAAAGCTGAGCGCAGAAGACGTGCTTCTCCTTTGATACCAGAAAAAGAAGGGCATGATGTGAATGATGCTGATCAAATTGTGAACTCAAACAGGAAACAAAGCCAAAGAAGGCCCGGTAGAGACCCCCAAAGCAGAAGATCATCTACTGCCCCGAGAGTTCGAGCAAGATCAGAAGTAGAAAACAAAGGCAACTATAGTGCAACACCAACTAAAGGTGAAAGAACACCATCACCATTGTCAAAGGCCCTGGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCACCATTGTCAAAGGCCCCGGTATTAACAACACCAACTGCAAGGGAGAGAACACCATCCCCAATCTCAAAAGGGTTGATCCAGCAACAAAGACAACACACAAAATCGCCGTCTGTTGGTGAGATCAATGAGATGATTGCCAATGCAAAGCTTGCTAGCACTCCTTTGGAGGCTAATTCTCCATTAGCTTTCGGAAGTTCAGAGTCTTTTGCACCAGGTGATATCTTCTTCTCTCGTGAGTGCAAAATCTTGGCACTGCCCAAAACTGTCAATCCCACACCAAAACCAAAGAATGCACTGCCCAAAACTGTCAATCCCATACCAAAACCAAAGAATGGTAGTGGTTTTGAGAACCGCTTAATTAGTCCTAATGTCAAAATGGTTACCCCAAGAGGAAATGGTTTCGATCAGAATGCTCGAGGGACTCCATTAAGCTATAATTTGTCACAGACAACCACAACAACATCAAGCTCAGCATTGAGCAGGCAAAGCAGTAAGATGAGTGGTACAAGTGGGAGCACAACTGCGAGTGCCAAGAAATTCACAGCAAATAGAAAGAAAAGTGAGAGTCACTCACTGTTTGCTTGTATGAGAAAGGGAGGGTCTTGTCGGAAAACAAAATCACCTGAACGTTCTCCTGTTTTCAATGAAGCTTCATTTATACAAAAGGCATTTGTGGATGAAAGTCTAAGGCAGTTTTGGGCTGATAAGCATCGACCGGCTTCGTTGAATGGATTCACTTGCCACATGCAAGAAGCTCAACTTCTCAAGGATCTGGTAATTGACAATAAATTTCCCCACATTTTGTTATCTGGACCATCTGGTTCTGGGAAAAAAGCTCTAACAATGGCTTTCCTAAGAGAGATATATGGTGATGCAAGCTGGGAAATATCTCATGATTTAAGATACTTCCAGATTCAGGAACAAATGTCGATGCAAGTAATGGTTCCATTGACATCCAGTGCTCACCATATAGAGCTTAATGTCCGCGTTGAAGCAAATGCTAGATATGCATTGATGGGTTTAGTAAAGGAAATCAACAGTGAGAATGACATTGCTCCTGAAATCAGCACTATTAATCTCAAGGGAAATCATAAAGTGCTAGTTCTCTACGATGTTGACCGAGCAGCAGAACATATTCAGCATTTGATCAAATGGATGATGGACTGTTACTCAGAAGCTTGTAAACTCATTCTCTGCTGTGAAAATGATGAAGACATCGTTGAATCAGTGAAAAATCGGTGCACAGTTATCAAGCTTGATGCTCCTGTGACTCAAGAAATTACGGAAGTTCTTGCTCAGATAGCAAGGAAGGAAAACTTTGACCTACCTATGAACTTTGCTAATAAGATTGCTAACAAATCTAAGCAGAACCTGAGAAAAGCAATCATGGGCCTTGAAGCAACCAAAGCACACAACTATCCTTTTGTAGATGACCAACCAATTCCAATTGGATGGGAAGAAGTACTTGTTGAAGTTGCTGCAGAAATCCTAGCTGACCCATCACCAAAGAGGTTATTTTTCATCCGGGGAAAGTTTCAAAAGCTTCTTGTGGGTTTTGTACATCCGAAACTGATTCTACTGAAGCTGGTAGAACAGTTCCTTAAAGCAATGGATGCTAGTTCTAAAAGGGACCTATATTATTGGCATGCTTACTATGAGAAAAGACTCCCAGCAGGAGCAAGTGCTTTACTAAAACTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACCGAAAGAGTGCCAACAGCCGTCAGTATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

812

Amino Acids

90.85

Weight (kDa)

9.78

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCF1-5-like_lid PF21960 655 - 694 2.4e-10 RCF1/5-like, AAA+ ATPase lid domain
RFC_C PF22534 710 - 799 2.3e-10 Replication factor C subunit 3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccII CGCG 1 cut(s) 1662
AciI CCGC 2 cut(s) 1027, 1660
AclI AACGTT 1 cut(s) 1303
AclWI GGATC 2 cut(s) 745, 1452
AcoI YGGCCR 2 cut(s) 115, 2385
AcsI RAATTY 3 cut(s) 1211, 1463, 2378
AcuI CTGAAG 2 cut(s) 68, 2276
AdeI CACNNNGTG 1 cut(s) 890
AfaI GTAC 4 cut(s) 331, 1180, 2139, 2235
AfiI CCNNNNNNNGG 6 cut(s) 113, 350, 599, 788, 1007, 1591
AjiI CACGTC 1 cut(s) 407
AjnI CCWGG 3 cut(s) 224, 633, 886
Alw21I GWGCWC 3 cut(s) 1193, 1639, 1919
Alw26I GTCTC 2 cut(s) 80, 501
Alw44I GTGCAC 1 cut(s) 1915
AlwI GGATC 2 cut(s) 745, 1452
AlwNI CAGNNNCTG 1 cut(s) 2047
Ama87I CYCGRG 2 cut(s) 538, 1089
AoxI GGCC 6 cut(s) 115, 497, 630, 687, 2065, 2385
ApaLI GTGCAC 1 cut(s) 1915
ApeKI GCWGC 3 cut(s) 164, 1799, 2153
ApoI RAATTY 3 cut(s) 1211, 1463, 2378
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
AseI ATTAAT 1 cut(s) 1749
Asp700I GAANNNNTTC 2 cut(s) 1406, 1809
AspLEI GCGC 2 cut(s) 60, 399
AspS9I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
AsuC2I CCSGG 5 cut(s) 55, 275, 501, 692, 2201
AsuNHI GCTAGC 1 cut(s) 827
AvaI CYCGRG 2 cut(s) 538, 1089
AvaII GGWCC 3 cut(s) 277, 1487, 2305
BaeGI GKGCMC 1 cut(s) 1919
BalI TGGCCA 2 cut(s) 117, 2387
BarI GAAGNNNNNNTAC 2 cut(s) 514, 546
BauI CACGAG 1 cut(s) 906
BbsI GAAGAC 3 cut(s) 56, 409, 1893
Bbv12I GWGCWC 3 cut(s) 1193, 1639, 1919
BbvI GCAGC 3 cut(s) 151, 1811, 2140
BceAI ACGGC 3 cut(s) 91, 766, 2409
BcgI CGANNNNNNTGC 2 cut(s) 1067, 1101
BciT130I CCWGG 3 cut(s) 226, 635, 888
BclI TGATCA 2 cut(s) 457, 1821
BcnI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
BcoDI GTCTC 2 cut(s) 80, 501
BfaI CTAG 7 cut(s) 98, 828, 1677, 1775, 2165, 2292, 2372
BfmI CTRYAG 3 cut(s) 165, 580, 2154
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 3 cut(s) 165, 1800, 2154
BlpI GCTNAGC 2 cut(s) 393, 1144
BlsI GCNGC 3 cut(s) 166, 1801, 2155
BmcAI AGTACT 1 cut(s) 2139
Bme1390I CCNGG 8 cut(s) 55, 226, 275, 501, 635, 692, 888, 2201
Bme18I GGWCC 3 cut(s) 277, 1487, 2305
BmeT110I CYCGRG 2 cut(s) 538, 1089
BmgBI CACGTC 1 cut(s) 407
BmgT120I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
BmiI GGNNCC 3 cut(s) 690, 1620, 2306
BmrFI CCNGG 8 cut(s) 55, 226, 275, 501, 635, 692, 888, 2201
BmsI GCATC 8 cut(s) 229, 250, 442, 1393, 1537, 1596, 1924, 2278
BmtI GCTAGC 1 cut(s) 831
BpiI GAAGAC 3 cut(s) 56, 409, 1893
BplI GAGNNNNNCTC 2 cut(s) 1229, 1261
Bpu1102I GCTNAGC 2 cut(s) 393, 1144
BpuEI CTTGAG 3 cut(s) 1424, 1739, 1932
BpuMI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
BsaBI GATNNNNATC 2 cut(s) 456, 1383
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 107, 633, 690, 2200
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 350, 599, 788, 1007, 1591
Bse118I RCCGGY 1 cut(s) 1390
Bse1I ACTGG 1 cut(s) 1632
Bse3DI GCAATG 2 cut(s) 1725, 2289
Bse8I GATNNNNATC 2 cut(s) 456, 1383
BseBI CCWGG 3 cut(s) 226, 635, 888
BseDI CCNNGG 4 cut(s) 107, 633, 690, 2200
BseGI GGATG 8 cut(s) 728, 1357, 1628, 1836, 2132, 2196, 2236, 2293
BseJI GATNNNNATC 2 cut(s) 456, 1383
BseLI CCNNNNNNNGG 6 cut(s) 113, 350, 599, 788, 1007, 1591
BseMI GCAATG 2 cut(s) 1725, 2289
BseMII CTCAG 7 cut(s) 50, 141, 384, 1158, 1860, 1985, 2039
BseNI ACTGG 1 cut(s) 1632
BseSI GKGCMC 1 cut(s) 1919
BseXI GCAGC 3 cut(s) 151, 1811, 2140
BseYI CCCAGC 2 cut(s) 1554, 2344
Bsh1236I CGCG 1 cut(s) 1662
Bsh1285I CGRYCG 1 cut(s) 1391
BshFI GGCC 6 cut(s) 117, 499, 632, 689, 2067, 2387
BsiEI CGRYCG 1 cut(s) 1391
BsiHKAI GWGCWC 3 cut(s) 1193, 1639, 1919
BsiHKCI CYCGRG 2 cut(s) 538, 1089
BsiSI CCGG 7 cut(s) 55, 211, 275, 501, 692, 1391, 2200
BslFI GGGAC 3 cut(s) 363, 1108, 2318
BslI CCNNNNNNNGG 6 cut(s) 113, 350, 599, 788, 1007, 1591
BsmAI GTCTC 2 cut(s) 80, 501
BsmFI GGGAC 3 cut(s) 363, 1108, 2318
BsmI GAATGC 2 cut(s) 970, 1090
BsnI GGCC 6 cut(s) 117, 499, 632, 689, 2067, 2387
Bso31I GGTCTC 1 cut(s) 501
BsoBI CYCGRG 2 cut(s) 538, 1089
Bsp1286I GDGCHC 3 cut(s) 1193, 1639, 1919
Bsp1407I TGTACA 1 cut(s) 2233
Bsp143I GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
Bsp1720I GCTNAGC 2 cut(s) 393, 1144
BspACI CCGC 2 cut(s) 1027, 1660
BspANI GGCC 6 cut(s) 117, 499, 632, 689, 2067, 2387
BspCNI CTCAG 7 cut(s) 49, 142, 385, 1157, 1859, 1984, 2040
BspFNI CGCG 1 cut(s) 1662
BspHI TCATGA 2 cut(s) 1567, 2394
BspLI GGNNCC 3 cut(s) 690, 1620, 2306
BspMAI CTGCAG 2 cut(s) 169, 2158
BspMI ACCTGC 1 cut(s) 341
BspOI GCTAGC 1 cut(s) 831
BspPI GGATC 2 cut(s) 745, 1452
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 1725, 2289
BsrFI RCCGGY 1 cut(s) 1390
BsrGI TGTACA 1 cut(s) 2233
BsrI ACTGG 1 cut(s) 1632
BssAI RCCGGY 1 cut(s) 1390
BssECI CCNNGG 4 cut(s) 107, 633, 690, 2200
BssMI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
BssSI CACGAG 1 cut(s) 906
Bst2BI CACGAG 1 cut(s) 906
Bst2UI CCWGG 3 cut(s) 226, 635, 888
Bst4CI ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
Bst6I CTCTTC 2 cut(s) 226, 313
BstAPI GCANNNNNTGC 2 cut(s) 824, 2288
BstAUI TGTACA 1 cut(s) 2233
BstC8I GCNNGC 5 cut(s) 825, 829, 1157, 1552, 2322
BstDSI CCRYGG 1 cut(s) 107
BstEII GGTNACC 1 cut(s) 1054
BstF5I GGATG 8 cut(s) 728, 1357, 1628, 1836, 2132, 2196, 2236, 2293
BstFNI CGCG 1 cut(s) 1662
BstHHI GCGC 2 cut(s) 60, 399
BstKTI GATC 9 cut(s) 132, 460, 527, 557, 753, 798, 1081, 1447, 1824
BstMAI GTCTC 2 cut(s) 80, 501
BstMBI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
BstMCI CGRYCG 1 cut(s) 1391
BstMWI GCNNNNNNNGC 7 cut(s) 248, 824, 1161, 1682, 1976, 2081, 2288
BstNI CCWGG 3 cut(s) 226, 635, 888
BstNSI RCATGY 2 cut(s) 1423, 2324
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 8 cut(s) 53, 224, 273, 499, 633, 690, 886, 2199
BstSFI CTRYAG 3 cut(s) 165, 580, 2154
BstSLI GKGCMC 1 cut(s) 1919
BstUI CGCG 1 cut(s) 1662
BstV1I GCAGC 3 cut(s) 151, 1811, 2140
BstV2I GAAGAC 3 cut(s) 56, 409, 1893
BstX2I RGATCY 1 cut(s) 1444
BstXI CCANNNNNNTGG 1 cut(s) 2127
BstYI RGATCY 1 cut(s) 1444
BsuRI GGCC 6 cut(s) 117, 499, 632, 689, 2067, 2387
BtgI CCRYGG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 407
BtsCI GGATG 8 cut(s) 728, 1357, 1628, 1836, 2132, 2196, 2236, 2293
BtsI GCAGTG 3 cut(s) 67, 926, 968
BtsIMutI CAGTG 9 cut(s) 44, 67, 139, 926, 968, 1247, 1639, 1720, 1908
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 5 cut(s) 825, 829, 1157, 1552, 2322
CaiI CAGNNNCTG 1 cut(s) 2047
CciI TCATGA 2 cut(s) 1567, 2394
CfoI GCGC 2 cut(s) 60, 399
Cfr10I RCCGGY 1 cut(s) 1390
Cfr13I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
CpoI CGGWCCG 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 886
Csp6I GTAC 4 cut(s) 330, 1179, 2138, 2234
CspI CGGWCCG 1 cut(s) 277
CviAII CATG 7 cut(s) 113, 440, 1420, 1568, 2062, 2321, 2395
CviQI GTAC 4 cut(s) 330, 1179, 2138, 2234
DpnI GATC 9 cut(s) 131, 459, 526, 556, 752, 797, 1080, 1446, 1823
DpnII GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
DraIII CACNNNGTG 1 cut(s) 890
EaeI YGGCCR 2 cut(s) 115, 2385
Eam1104I CTCTTC 2 cut(s) 226, 313
EarI CTCTTC 2 cut(s) 226, 313
Eco31I GGTCTC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 3 cut(s) 277, 1487, 2305
Eco57I CTGAAG 2 cut(s) 68, 2276
Eco88I CYCGRG 2 cut(s) 538, 1089
Eco91I GGTNACC 1 cut(s) 1054
EcoO109I RGGNCCY 3 cut(s) 631, 688, 2305
EcoO65I GGTNACC 1 cut(s) 1054
EcoRII CCWGG 3 cut(s) 224, 633, 886
EcoRV GATATC 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 1687
FaeI CATG 7 cut(s) 116, 443, 1423, 1571, 2065, 2324, 2398
FalI AAGNNNNNCTT 8 cut(s) 394, 426, 1419, 1451, 1976, 2008, 2124, 2156
FaqI GGGAC 3 cut(s) 363, 1108, 2318
FatI CATG 7 cut(s) 112, 439, 1419, 1567, 2061, 2320, 2394
FbaI TGATCA 2 cut(s) 457, 1821
Fnu4HI GCNGC 3 cut(s) 165, 1800, 2154
FokI GGATG 8 cut(s) 715, 1364, 1615, 1843, 2139, 2183, 2223, 2300
Fsp4HI GCNGC 3 cut(s) 165, 1800, 2154
FspBI CTAG 7 cut(s) 98, 828, 1677, 1775, 2165, 2292, 2372
GlaI GCGC 2 cut(s) 59, 398
GluI GCNGC 3 cut(s) 165, 1800, 2154
GsaI CCCAGC 2 cut(s) 1558, 2348
HaeIII GGCC 6 cut(s) 117, 499, 632, 689, 2067, 2387
HapII CCGG 7 cut(s) 55, 211, 275, 501, 692, 1391, 2200
HhaI GCGC 2 cut(s) 60, 399
Hin1II CATG 7 cut(s) 116, 443, 1423, 1571, 2065, 2324, 2398
Hin6I GCGC 2 cut(s) 58, 397
HinP1I GCGC 2 cut(s) 58, 397
HincII GTYRAC 1 cut(s) 1792
HindII GTYRAC 1 cut(s) 1792
HindIII AAGCTT 5 cut(s) 821, 1323, 1851, 1928, 2216
HpaII CCGG 7 cut(s) 55, 211, 275, 501, 692, 1391, 2200
Hpy166II GTNNAC 5 cut(s) 341, 469, 1792, 1859, 1917
Hpy188III TCNNGA 8 cut(s) 908, 1485, 1568, 1585, 1592, 1733, 1949, 2395
Hpy8I GTNNAC 5 cut(s) 341, 469, 1792, 1859, 1917
HpyAV CCTTC 3 cut(s) 428, 489, 1978
HpyCH4III ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
HpyCH4IV ACGT 2 cut(s) 406, 1303
HpyF10VI GCNNNNNNNGC 7 cut(s) 248, 824, 1161, 1682, 1976, 2081, 2288
HpySE526I ACGT 2 cut(s) 406, 1303
Hsp92II CATG 7 cut(s) 116, 443, 1423, 1571, 2065, 2324, 2398
HspAI GCGC 2 cut(s) 58, 397
Ksp22I TGATCA 2 cut(s) 457, 1821
Kzo9I GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
LmnI GCTCC 4 cut(s) 1188, 1735, 1942, 2351
Lsp1109I GCAGC 3 cut(s) 151, 1811, 2140
LweI GCATC 8 cut(s) 229, 250, 442, 1393, 1537, 1596, 1924, 2278
MabI ACCWGGT 1 cut(s) 886
MaeI CTAG 7 cut(s) 98, 828, 1677, 1775, 2165, 2292, 2372
MaeII ACGT 2 cut(s) 406, 1303
MaeIII GTNAC 7 cut(s) 154, 300, 1054, 1116, 1241, 1841, 1942
MalI GATC 9 cut(s) 131, 459, 526, 556, 752, 797, 1080, 1446, 1823
MboI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
MfeI CAATTG 1 cut(s) 2121
MflI RGATCY 1 cut(s) 1444
MhlI GDGCHC 3 cut(s) 1193, 1639, 1919
MlsI TGGCCA 2 cut(s) 117, 2387
MluNI TGGCCA 2 cut(s) 117, 2387
MlyI GAGTC 5 cut(s) 884, 1090, 1249, 1939, 2334
MmeI TCCRAC 2 cut(s) 153, 1262
MnlI CCTC 9 cut(s) 52, 131, 145, 207, 835, 1058, 1085, 1265, 2178
Mox20I TGGCCA 2 cut(s) 117, 2387
Mph1103I ATGCAT 1 cut(s) 1687
MroXI GAANNNNTTC 2 cut(s) 1406, 1809
MscI TGGCCA 2 cut(s) 117, 2387
MseI TTAA 8 cut(s) 641, 698, 1031, 1103, 1574, 1653, 1749, 2277
Msp20I TGGCCA 2 cut(s) 117, 2387
MspI CCGG 7 cut(s) 55, 211, 275, 501, 692, 1391, 2200
MspR9I CCNGG 8 cut(s) 55, 226, 275, 501, 635, 692, 888, 2201
MunI CAATTG 1 cut(s) 2121
Mva1269I GAATGC 2 cut(s) 970, 1090
MvaI CCWGG 3 cut(s) 226, 635, 888
MvnI CGCG 1 cut(s) 1662
MwoI GCNNNNNNNGC 7 cut(s) 248, 824, 1161, 1682, 1976, 2081, 2288
NciI CCSGG 5 cut(s) 55, 275, 501, 692, 2201
NdeII GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
NheI GCTAGC 1 cut(s) 827
NlaIII CATG 7 cut(s) 116, 443, 1423, 1571, 2065, 2324, 2398
NlaIV GGNNCC 3 cut(s) 690, 1620, 2306
NmuCI GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
NsiI ATGCAT 1 cut(s) 1687
NspI RCATGY 2 cut(s) 1423, 2324
PaeI GCATGC 1 cut(s) 2324
PaeR7I CTCGAG 1 cut(s) 1089
PagI TCATGA 2 cut(s) 1567, 2394
PaqCI CACCTGC 1 cut(s) 341
PctI GAATGC 2 cut(s) 970, 1090
PdmI GAANNNNTTC 2 cut(s) 1406, 1809
PfeI GAWTC 5 cut(s) 146, 1407, 1588, 1898, 2248
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 3 cut(s) 166, 1801, 2155
PleI GAGTC 5 cut(s) 883, 1090, 1248, 1939, 2334
PpsI GAGTC 5 cut(s) 883, 1090, 1248, 1939, 2334
PpuMI RGGWCCY 1 cut(s) 2305
PshBI ATTAAT 1 cut(s) 1749
Psp1406I AACGTT 1 cut(s) 1303
Psp5II RGGWCCY 1 cut(s) 2305
Psp6I CCWGG 3 cut(s) 224, 633, 886
PspEI GGTNACC 1 cut(s) 1054
PspFI CCCAGC 2 cut(s) 1554, 2344
PspGI CCWGG 3 cut(s) 224, 633, 886
PspN4I GGNNCC 3 cut(s) 690, 1620, 2306
PspPI GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
PspPPI RGGWCCY 1 cut(s) 2305
PspXI VCTCGAGB 1 cut(s) 1089
PsrI GAACNNNNNNTAC 2 cut(s) 322, 354
PstI CTGCAG 2 cut(s) 169, 2158
PstNI CAGNNNCTG 1 cut(s) 2047
PsuI RGATCY 1 cut(s) 1444
RsaI GTAC 4 cut(s) 331, 1180, 2139, 2235
RsaNI GTAC 4 cut(s) 330, 1179, 2138, 2234
Rsr2I CGGWCCG 1 cut(s) 277
RsrII CGGWCCG 1 cut(s) 277
SaqAI TTAA 8 cut(s) 641, 698, 1031, 1103, 1574, 1653, 1749, 2277
SatI GCNGC 3 cut(s) 165, 1800, 2154
Sau3AI GATC 9 cut(s) 129, 457, 524, 554, 750, 795, 1078, 1444, 1821
Sau96I GGNCC 7 cut(s) 277, 498, 631, 688, 1487, 2065, 2305
ScaI AGTACT 1 cut(s) 2139
SchI GAGTC 5 cut(s) 884, 1090, 1249, 1939, 2334
ScrFI CCNGG 8 cut(s) 55, 226, 275, 501, 635, 692, 888, 2201
SduI GDGCHC 3 cut(s) 1193, 1639, 1919
SexAI ACCWGGT 1 cut(s) 886
SfaNI GCATC 8 cut(s) 229, 250, 442, 1393, 1537, 1596, 1924, 2278
SfcI CTRYAG 3 cut(s) 165, 580, 2154
Sfr274I CTCGAG 1 cut(s) 1089
SinI GGWCC 3 cut(s) 277, 1487, 2305
SlaI CTCGAG 1 cut(s) 1089
SmlI CTYRAG 4 cut(s) 1089, 1439, 1754, 1947
SmoI CTYRAG 4 cut(s) 1089, 1439, 1754, 1947
SphI GCATGC 1 cut(s) 2324
SsiI CCGC 2 cut(s) 1027, 1660
SspMI CTAG 7 cut(s) 98, 828, 1677, 1775, 2165, 2292, 2372
StyD4I CCNGG 8 cut(s) 53, 224, 273, 499, 633, 690, 886, 2199
TaaI ACNGT 8 cut(s) 334, 940, 982, 1251, 1715, 1841, 1921, 2271
TaiI ACGT 2 cut(s) 409, 1306
TaqI TCGA 5 cut(s) 547, 1077, 1090, 1387, 1604
TaqII GACCGA 1 cut(s) 1809
TatI WGTACW 2 cut(s) 2137, 2233
TfiI GAWTC 5 cut(s) 146, 1407, 1588, 1898, 2248
Tru1I TTAA 8 cut(s) 641, 698, 1031, 1103, 1574, 1653, 1749, 2277
Tru9I TTAA 8 cut(s) 641, 698, 1031, 1103, 1574, 1653, 1749, 2277
TscAI CASTG 9 cut(s) 51, 67, 139, 933, 975, 1254, 1639, 1720, 1908
TseFI GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
TseI GCWGC 3 cut(s) 164, 1799, 2153
Tsp45I GTSAC 5 cut(s) 154, 300, 1116, 1241, 1942
TspDTI ATGAA 8 cut(s) 84, 1317, 1335, 1368, 1899, 2021, 2185, 2383
TspGWI ACGGA 1 cut(s) 1973
TspRI CASTG 9 cut(s) 51, 67, 139, 933, 975, 1254, 1639, 1720, 1908
Van91I CCANNNNNTGG 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 1915
VpaK11BI GGWCC 3 cut(s) 277, 1487, 2305
VspI ATTAAT 1 cut(s) 1749
XapI RAATTY 3 cut(s) 1211, 1463, 2378
XceI RCATGY 2 cut(s) 1423, 2324
XhoI CTCGAG 1 cut(s) 1089
XmnI GAANNNNTTC 2 cut(s) 1406, 1809
XspI CTAG 7 cut(s) 98, 828, 1677, 1775, 2165, 2292, 2372
ZrmI AGTACT 1 cut(s) 2139
Zsp2I ATGCAT 1 cut(s) 1687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.