Rorug04G0161000

methionine sulfoxide reductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
28033863 .. 28034497
635 bp
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UTR
Exon/CDS
Intron
Rorug04G0161000.1

Sequence Viewer

Length: 363 bp
ATGAGAACCATACTTACCATTTGCGTCGTTGGCTTGCTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAATCTGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATTTCAGTCTCAGTCCCAGACCACAAGTAAGGGTAGCAGCAACAGCGATGCAAAGCATGATGATCATGACGAAGATGACTTGAACGAGATTCATGCTACAATCCAATGCATGCCAGATAAACCTCAAGGGAGGCCGCATTGTAAAACTACTGAGTCTAAAAGCCTTCATGAGCCTAAAAGCCTTCATGCATGA

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

5.84

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 110, 135
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 104, 253
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 2 cut(s) 110, 135
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 207
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 56, 150
BisI GCNGC 2 cut(s) 208, 305
BlsI GCNGC 2 cut(s) 209, 306
BmsI GCATC 3 cut(s) 55, 59, 208
BpuEI CTTGAG 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 120
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 3 cut(s) 129, 194, 312
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 115, 127, 166, 232
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 3 cut(s) 130, 193, 313
BspHI TCATGA 2 cut(s) 235, 337
BspPI GGATC 2 cut(s) 110, 135
BssMI GATC 4 cut(s) 115, 127, 166, 232
Bst4CI ACNGT 3 cut(s) 46, 75, 92
BstC8I GCNNGC 2 cut(s) 35, 281
BstDEI CTNAG 3 cut(s) 138, 180, 321
BstKTI GATC 4 cut(s) 118, 130, 169, 235
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 115, 127, 166, 232
BstMWI GCNNNNNNNGC 2 cut(s) 30, 213
BstNSI RCATGY 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 35, 281
CciI TCATGA 2 cut(s) 235, 337
CseI GACGC 1 cut(s) 13
CviAII CATG 8 cut(s) 86, 227, 236, 263, 280, 338, 356, 360
CviJI RGCY 6 cut(s) 33, 62, 304, 333, 343, 351
CviKI_1 RGCY 6 cut(s) 33, 62, 304, 333, 343, 351
DdeI CTNAG 3 cut(s) 138, 180, 321
DpnI GATC 4 cut(s) 117, 129, 168, 234
DpnII GATC 4 cut(s) 115, 127, 166, 232
Eco81I CCTNAGG 1 cut(s) 138
EcoT22I ATGCAT 2 cut(s) 281, 361
FaeI CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
FaiI YATR 9 cut(s) 11, 87, 228, 237, 264, 281, 339, 357, 361
FaqI GGGAC 1 cut(s) 169
FatI CATG 8 cut(s) 85, 226, 235, 262, 279, 337, 355, 359
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 208, 305
Fsp4HI GCNGC 2 cut(s) 208, 305
FspBI CTAG 2 cut(s) 56, 150
GluI GCNGC 2 cut(s) 208, 305
HaeIII GGCC 1 cut(s) 304
HgaI GACGC 1 cut(s) 13
Hin1II CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 259, 323
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 4 cut(s) 56, 125, 236, 338
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 344, 362
HpyCH4III ACNGT 3 cut(s) 46, 75, 92
HpyCH4V TGCA 5 cut(s) 85, 161, 221, 279, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 213
HpyF3I CTNAG 3 cut(s) 138, 180, 321
Hsp92II CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 115, 127, 166, 232
LpnPI CCDG 4 cut(s) 110, 150, 200, 297
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 3 cut(s) 55, 59, 208
MaeI CTAG 2 cut(s) 56, 150
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 117, 129, 168, 234
MboI GATC 4 cut(s) 115, 127, 166, 232
MboII GAAGA 1 cut(s) 254
MluCI AATT 1 cut(s) 170
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 3 cut(s) 133, 294, 303
Mph1103I ATGCAT 2 cut(s) 281, 361
MseI TTAA 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 30, 213
NdeII GATC 4 cut(s) 115, 127, 166, 232
NlaIII CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 281, 361
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PagI TCATGA 2 cut(s) 235, 337
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 209, 306
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PsrI GAACNNNNNNTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 208, 305
Sau3AI GATC 4 cut(s) 115, 127, 166, 232
SchI GAGTC 1 cut(s) 332
SetI ASST 2 cut(s) 144, 295
SfaNI GCATC 3 cut(s) 55, 59, 208
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 1 cut(s) 283
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 56, 150
TaaI ACNGT 3 cut(s) 46, 75, 92
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 251, 326, 344
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 283
XspI CTAG 2 cut(s) 56, 150
Zsp2I ATGCAT 2 cut(s) 281, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.