Rorug05G0550000

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001678
Physical Location & Seq
Reverse (-)
73814828 .. 73818607
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0550000.1

Sequence Viewer

Length: 1029 bp
ATGAGCAATTTAAGAGCCAAGTTCATGGAGGTCTACTCTGTTCTGAAATCGGAGCTCATCAATGACCCTGCTTTCGAATTCACAGACGTTTCTCGTCAATGGATCGAGCGGATGCTGGACTACAACGTTCCAGGAGGAAAGCTGAACCGAGGACTATCCGTTGTTGACAGCTTTAAATTACTGAAGGAAGGAAGGGAGCTAACAGATGAGGAAGTTTTTCAGTCTTGTGCACTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTCGTTCTTGATGATATCATGGATGGCTCTCATACGCGTAGGGGTCAGCCCTGCTGGTTCAGACAACCAAAGATTGGCATGATTGCTGCGAATGATGGCATCATTCTTCGTAACCATATTCCGAGGATTCTCAAAAACCATTTTAGGGTGATGCCGTACTATGTGGATCTGCTGGATTTATTTAATGAGGTGGAATTTCAAACTGCCCATGGACAAATGATTGATTTAATCACCACTCATGAAGGAGAGAAAGATCTATCAAAGTACTCCTTGGAAATTCACCGGCGCATTGTTCAGTACAAAACTGCTTACTACTCATTTTATCTTCCAGTAGCATGTGCATTGGTAATGGCAGGCGAAAACGTTGAAAGCCATGCTGATGTGAAGAATATTCTCATTGAGATGGGAACTTATTTTCAAGTACAGGATGATTACTTGGATTGTTTTGGTGATCCTGAAGTGATTGGAAAGGTTGGGACTGACATTCAAGACTTCAAGTGCTCTTGGATGGTTGTTAAAGCATTAGAACTTTCCAACGAGGAACAAAAGAAACTATTACATGAGAACTATGGGAAAGACGATCAAGAGTGTATTGCAAAAGTGAAAGAGCTATACAACGTCCTTGATCTTCAGGGTGTGTTTGTGGAGTATGAGAGCAGCAGTTACGACAAGCTTACAAAATCCATTGAAGCTCATCCAAGTAAAGCGGTACAGGCTGTGTTGAAGTCATTCTTGGCAAAGATATACAAGAGGCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

342

Amino Acids

39.59

Weight (kDa)

5.39

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
polyprenyl_synt PF00348 33 - 296 3e-81 Polyprenyl synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 341
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 304
AciI CCGC 2 cut(s) 109, 974
AclI AACGTT 2 cut(s) 126, 630
AclWI GGATC 3 cut(s) 110, 441, 713
AcsI RAATTY 3 cut(s) 77, 461, 543
AcuI CTGAAG 3 cut(s) 203, 744, 881
AfaI GTAC 5 cut(s) 425, 533, 566, 690, 978
AfiI CCNNNNNNNGG 2 cut(s) 341, 412
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 9 cut(s) 248, 257, 467, 635, 686, 755, 763, 956, 991
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 7 cut(s) 55, 142, 171, 199, 877, 940, 959
AluI AGCT 7 cut(s) 55, 142, 171, 199, 877, 940, 959
Alw21I GWGCWC 3 cut(s) 57, 232, 770
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 3 cut(s) 110, 441, 713
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 353, 924
ApoI RAATTY 3 cut(s) 77, 461, 543
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
Asp700I GAANNNNTTC 3 cut(s) 216, 252, 995
AspLEI GCGC 1 cut(s) 555
AsuHPI GGTGA 4 cut(s) 427, 490, 539, 728
AsuII TTCGAA 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 3 cut(s) 57, 232, 770
BbvI GCAGC 2 cut(s) 340, 936
BccI CCATC 4 cut(s) 284, 356, 664, 769
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 132
BglII AGATCT 1 cut(s) 520
BisI GCNGC 2 cut(s) 354, 925
BlsI GCNGC 2 cut(s) 355, 926
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 3 cut(s) 102, 375, 408
BplI GAGNNNNNCTC 2 cut(s) 20, 52
Bpu14I TTCGAA 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 148, 389, 475, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 412
Bse118I RCCGGY 1 cut(s) 549
Bse1I ACTGG 1 cut(s) 596
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 4 cut(s) 148, 389, 475, 537
BseGI GGATG 5 cut(s) 117, 295, 700, 780, 961
BseLI CCNNNNNNNGG 2 cut(s) 341, 412
BseNI ACTGG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 232
BseXI GCAGC 2 cut(s) 340, 936
Bsh1236I CGCG 1 cut(s) 304
BsiHKAI GWGCWC 3 cut(s) 57, 232, 770
BsiSI CCGG 1 cut(s) 550
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 2 cut(s) 341, 412
BsmFI GGGAC 1 cut(s) 757
Bsp119I TTCGAA 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 57, 232, 770
Bsp143I GATC 6 cut(s) 102, 433, 520, 718, 847, 892
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 109, 974
BspFNI CGCG 1 cut(s) 304
BspHI TCATGA 1 cut(s) 505
BspPI GGATC 3 cut(s) 110, 441, 713
BspT104I TTCGAA 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 549
BsrI ACTGG 1 cut(s) 596
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 4 cut(s) 148, 389, 475, 537
BssMI GATC 6 cut(s) 102, 433, 520, 718, 847, 892
BssT1I CCWWGG 2 cut(s) 475, 537
Bst2UI CCWGG 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 622
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 5 cut(s) 117, 295, 700, 780, 961
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 6 cut(s) 105, 436, 523, 721, 850, 895
BstMBI GATC 6 cut(s) 102, 433, 520, 718, 847, 892
BstMWI GCNNNNNNNGC 1 cut(s) 980
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 232
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 340, 936
BstX2I RGATCY 2 cut(s) 433, 520
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 2 cut(s) 433, 520
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 5 cut(s) 117, 295, 700, 780, 961
Cac8I GCNNGC 1 cut(s) 622
CciI TCATGA 1 cut(s) 505
CfoI GCGC 1 cut(s) 555
Cfr10I RCCGGY 1 cut(s) 549
Csp6I GTAC 5 cut(s) 424, 532, 565, 689, 977
CviAII CATG 8 cut(s) 25, 286, 346, 476, 506, 603, 641, 827
CviQI GTAC 5 cut(s) 424, 532, 565, 689, 977
DpnI GATC 6 cut(s) 104, 435, 522, 720, 849, 894
DpnII GATC 6 cut(s) 102, 433, 520, 718, 847, 892
DraI TTTAAA 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 475, 537
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 3 cut(s) 203, 744, 881
EcoICRI GAGCTC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 130
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 475, 537
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 475, 537
FaeI CATG 8 cut(s) 28, 289, 349, 479, 509, 606, 644, 830
FalI AAGNNNNNCTT 4 cut(s) 521, 553, 983, 1015
FaqI GGGAC 1 cut(s) 757
FatI CATG 8 cut(s) 24, 285, 345, 475, 505, 602, 640, 826
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 354, 925
FokI GGATG 5 cut(s) 124, 302, 707, 787, 948
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 354, 925
GlaI GCGC 1 cut(s) 554
GluI GCNGC 2 cut(s) 354, 925
HapII CCGG 1 cut(s) 550
HhaI GCGC 1 cut(s) 555
Hin1II CATG 8 cut(s) 28, 289, 349, 479, 509, 606, 644, 830
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 1 cut(s) 394
HpaII CCGG 1 cut(s) 550
HphI GGTGA 4 cut(s) 427, 490, 539, 728
Hpy166II GTNNAC 3 cut(s) 34, 166, 230
Hpy188I TCNGA 4 cut(s) 45, 52, 329, 390
Hpy188III TCNNGA 5 cut(s) 275, 506, 722, 755, 851
Hpy8I GTNNAC 3 cut(s) 34, 166, 230
HpyAV CCTTC 4 cut(s) 178, 182, 186, 503
HpyCH4IV ACGT 4 cut(s) 87, 126, 630, 885
HpyCH4V TGCA 3 cut(s) 230, 608, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 980
HpySE526I ACGT 4 cut(s) 87, 126, 630, 885
Hsp92II CATG 8 cut(s) 28, 289, 349, 479, 509, 606, 644, 830
HspAI GCGC 1 cut(s) 553
Kzo9I GATC 6 cut(s) 102, 433, 520, 718, 847, 892
LmnI GCTCC 2 cut(s) 52, 196
Lsp1109I GCAGC 2 cut(s) 340, 936
LweI GCATC 3 cut(s) 102, 375, 408
MaeII ACGT 4 cut(s) 87, 126, 630, 885
MaeIII GTNAC 2 cut(s) 377, 929
MalI GATC 6 cut(s) 104, 435, 522, 720, 849, 894
MbiI CCGCTC 1 cut(s) 109
MboI GATC 6 cut(s) 102, 433, 520, 718, 847, 892
MboII GAAGA 4 cut(s) 365, 584, 664, 887
MflI RGATCY 2 cut(s) 433, 520
MhlI GDGCHC 3 cut(s) 57, 232, 770
MluCI AATT 5 cut(s) 7, 77, 176, 461, 543
MluI ACGCGT 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 8 cut(s) 22, 128, 143, 202, 384, 448, 799, 1011
MroXI GAANNNNTTC 3 cut(s) 216, 252, 995
MseI TTAA 5 cut(s) 11, 174, 450, 494, 783
MslI CAYNNNNRTG 2 cut(s) 645, 668
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 980
NcoI CCATGG 1 cut(s) 475
NdeII GATC 6 cut(s) 102, 433, 520, 718, 847, 892
NlaIII CATG 8 cut(s) 28, 289, 349, 479, 509, 606, 644, 830
NspI RCATGY 1 cut(s) 606
NspV TTCGAA 1 cut(s) 75
PagI TCATGA 1 cut(s) 505
PdmI GAANNNNTTC 3 cut(s) 216, 252, 995
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 130
PkrI GCNGC 2 cut(s) 355, 926
Psp124BI GAGCTC 1 cut(s) 57
Psp1406I AACGTT 2 cut(s) 126, 630
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 433, 520
RsaI GTAC 5 cut(s) 425, 533, 566, 690, 978
RsaNI GTAC 5 cut(s) 424, 532, 565, 689, 977
RseI CAYNNNNRTG 2 cut(s) 645, 668
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 5 cut(s) 11, 174, 450, 494, 783
SatI GCNGC 2 cut(s) 354, 925
Sau3AI GATC 6 cut(s) 102, 433, 520, 718, 847, 892
ScaI AGTACT 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 57, 232, 770
SfaNI GCATC 3 cut(s) 102, 375, 408
SfuI TTCGAA 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 645, 668
Sse9I AATT 5 cut(s) 7, 77, 176, 461, 543
SsiI CCGC 2 cut(s) 109, 974
SspI AATATT 1 cut(s) 658
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 475, 537
TaiI ACGT 4 cut(s) 90, 129, 633, 888
TaqI TCGA 2 cut(s) 75, 105
TasI AATT 5 cut(s) 7, 77, 176, 461, 543
TatI WGTACW 3 cut(s) 531, 564, 688
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 5 cut(s) 11, 174, 450, 494, 783
Tru9I TTAA 5 cut(s) 11, 174, 450, 494, 783
TseI GCWGC 2 cut(s) 353, 924
TspDTI ATGAA 2 cut(s) 13, 522
TspGWI ACGGA 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 228
XapI RAATTY 3 cut(s) 77, 461, 543
XceI RCATGY 1 cut(s) 606
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 3 cut(s) 216, 252, 995
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.