Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006416.1

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

15776 .. 18224

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006416.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgtgtaggagaccattggagaagtgctttggaggtggagatgatgagcttctatggcacacggacttgaagcctcactcttctggggagtattcaattgctgttgttcaggctaattcatctttggaagatcagggacaagtgttcacttctccttctgccacgtatgttggagtttatgacggccatggtggtcctgaagcttctagattcatcactcagcggctcttcccctttattcagaagttttcaaatgagcaaggtggactatcagaggatgtgattaggaaagcgtttgatgcaactgaggaggagtttgtggacttggtcaagcggtcatggccggcacggccaagtattgcttctgtaggttcatgctgtcttgttggcgccattacgaatgatgtcttgtatgtggctaatctcggagattcgagggcggttcttggtcggagagcaatagatggaccgacggtggtggcagagcggttgtctacagatcacaatgttggagtggaggaggtgaggagggaggttaaggatcttcaccctgacgattcgcacattgtggtttatactcgtggggtttggcgaattaagggcattattcaggtctctagatcgatcggagatgtctacttgaagaaacctgagtttaacagagatcctctcttccagtttggtatacctgttcctttaaagaggcctgtaatgacatcagtaccctcaatattggttcggaagttgcaaccccaggacatgtttttgatatttgcaacagatggtctctgggagcatttgactgatgaagcagctgttaaagtcgtctcaaaaaattcaagagttggaatagcaaagcgactggtaagaactgccattgaggaggctgcaaggaaaagagaattgagatatgatgacataaagaaacttgaaaagggggtaaggcgtcatttccatgatgatatcactgtaattgtgatattcctggatcatccacaaacttccccaaatgctacggataacagcctctttacctgcactagtgttcccgttgatatcttttctaataatgacgatgaagcagttggctcacttcatacatttccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

369

Amino Acids

41.15

Weight (kDa)

6.02

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1043
AccB1I	GGYRCC	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	487
AccI	GTMKAC	3 cut(s)	494, 636, 685
AciI	CCGC	4 cut(s)	223, 334, 440, 487
AclWI	GGATC	3 cut(s)	549, 659, 996
AcoI	YGGCCR	3 cut(s)	184, 341, 350
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	2 cut(s)	390, 946
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	1 cut(s)	723
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	6 cut(s)	70, 96, 252, 643, 840, 932
AhlI	ACTAGT	1 cut(s)	1040
AjnI	CCWGG	2 cut(s)	753, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	3 cut(s)	49, 203, 815
AluI	AGCT	3 cut(s)	49, 203, 815
Alw26I	GTCTC	4 cut(s)	4, 619, 791, 832
AlwI	GGATC	3 cut(s)	549, 659, 996
AoxI	GGCC	4 cut(s)	184, 341, 350, 704
ApeKI	GCWGC	2 cut(s)	812, 887
ApoI	RAATTY	1 cut(s)	835
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	194, 467
AsuHPI	GGTGA	2 cut(s)	535, 539
AvaII	GGWCC	2 cut(s)	194, 467
BaeI	ACNNNNGTAYC	2 cut(s)	705, 738
BanI	GGYRCC	1 cut(s)	389
BauI	CACGAG	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	824, 874
BccI	CCATC	2 cut(s)	458, 776
BceAI	ACGGC	2 cut(s)	199, 365
BciT130I	CCWGG	2 cut(s)	755, 986
BcoDI	GTCTC	4 cut(s)	4, 619, 791, 832
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	3 cut(s)	207, 618, 1041
BfmI	CTRYAG	2 cut(s)	366, 495
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	1043
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	3 cut(s)	224, 813, 888
BlsI	GCNGC	3 cut(s)	225, 814, 889
Bme1390I	CCNGG	2 cut(s)	755, 986
Bme18I	GGWCC	2 cut(s)	194, 467
BmgT120I	GGNCC	2 cut(s)	194, 467
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	755, 986
BmsI	GCATC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	654, 686
Bsa29I	ATCGAT	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	390, 946
BsaI	GGTCTC	3 cut(s)	4, 619, 791
BsaJI	CCNNGG	2 cut(s)	187, 753
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	676, 867
BseBI	CCWGG	2 cut(s)	755, 986
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	187, 753
BseGI	GGATG	2 cut(s)	283, 991
BseMII	CTCAG	3 cut(s)	233, 297, 642
BseNI	ACTGG	2 cut(s)	676, 867
BseRI	GAGGAG	5 cut(s)	323, 326, 533, 541, 896
BseXI	GCAGC	2 cut(s)	824, 874
BsgI	GTGCAG	1 cut(s)	1021
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	4 cut(s)	186, 343, 352, 706
BshNI	GGYRCC	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	623
BsiEI	CGRYCG	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	150
BsmAI	GTCTC	4 cut(s)	4, 619, 791, 832
BsmBI	CGTCTC	1 cut(s)	832
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	4 cut(s)	186, 343, 352, 706
Bso31I	GGTCTC	3 cut(s)	4, 619, 791
Bsp143I	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	4 cut(s)	223, 334, 440, 487
BspANI	GGCC	4 cut(s)	186, 343, 352, 706
BspCNI	CTCAG	3 cut(s)	232, 298, 643
BspDI	ATCGAT	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	1043
BspPI	GGATC	3 cut(s)	549, 659, 996
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	3 cut(s)	4, 619, 791
BsrBI	CCGCTC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	676, 867
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	187, 753
BssMI	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
BssNAI	GTATAC	1 cut(s)	686
BssNI	GRCGYC	2 cut(s)	390, 946
BssSI	CACGAG	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	755, 986
Bst4CI	ACNGT	2 cut(s)	475, 970
Bst6I	CTCTTC	3 cut(s)	85, 233, 677
BstACI	GRCGYC	2 cut(s)	390, 946
BstBAI	YACGTR	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	219, 306, 651
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	283, 991
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	7 cut(s)	133, 502, 544, 623, 627, 667, 991
BstMAI	GTCTC	4 cut(s)	4, 619, 791, 832
BstMBI	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 299, 340, 349
BstNI	CCWGG	2 cut(s)	755, 986
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	2 cut(s)	753, 984
BstSFI	CTRYAG	2 cut(s)	366, 495
BstV1I	GCAGC	2 cut(s)	824, 874
BstX2I	RGATCY	2 cut(s)	541, 664
BstYI	RGATCY	2 cut(s)	541, 664
BstZ17I	GTATAC	1 cut(s)	686
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	4 cut(s)	186, 343, 352, 706
BsuTUI	ATCGAT	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	2 cut(s)	283, 991
BtsIMutI	CAGTG	1 cut(s)	966
BveI	ACCTGC	1 cut(s)	1043
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	194, 467
ClaI	ATCGAT	1 cut(s)	623
CseI	GACGC	1 cut(s)	935
Csp6I	GTAC	1 cut(s)	722
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	5 cut(s)	188, 339, 375, 760, 956
CviQI	GTAC	1 cut(s)	722
DdeI	CTNAG	3 cut(s)	219, 306, 651
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	7 cut(s)	132, 501, 543, 622, 626, 666, 990
DpnII	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
DraI	TTTAAA	1 cut(s)	699
DraIII	CACNNNGTG	1 cut(s)	568
EaeI	YGGCCR	3 cut(s)	184, 341, 350
Eam1104I	CTCTTC	3 cut(s)	85, 233, 677
EarI	CTCTTC	3 cut(s)	85, 233, 677
Eco130I	CCWWGG	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	706
Eco31I	GGTCTC	3 cut(s)	4, 619, 791
Eco32I	GATATC	2 cut(s)	964, 1057
Eco47I	GGWCC	2 cut(s)	194, 467
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	753, 984
EcoRV	GATATC	2 cut(s)	964, 1057
EcoT14I	CCWWGG	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	832
FaeI	CATG	5 cut(s)	191, 342, 378, 763, 959
FalI	AAGNNNNNCTT	2 cut(s)	346, 378
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	5 cut(s)	187, 338, 374, 759, 955
FblI	GTMKAC	3 cut(s)	494, 636, 685
Fnu4HI	GCNGC	3 cut(s)	224, 813, 888
FokI	GGATG	2 cut(s)	290, 978
Fsp4HI	GCNGC	3 cut(s)	224, 813, 888
FspBI	CTAG	3 cut(s)	207, 618, 1041
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	3 cut(s)	224, 813, 888
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	186, 343, 352, 706
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	935
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	2 cut(s)	390, 946
Hin1II	CATG	5 cut(s)	191, 342, 378, 763, 959
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	210, 431, 557
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	535, 539
Hpy166II	GTNNAC	6 cut(s)	147, 266, 322, 495, 637, 686
Hpy188I	TCNGA	6 cut(s)	243, 274, 428, 453, 629, 741
Hpy188III	TCNNGA	4 cut(s)	197, 207, 618, 840
Hpy8I	GTNNAC	6 cut(s)	147, 266, 322, 495, 637, 686
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	475, 970
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	5 cut(s)	302, 748, 776, 890, 1038
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 299, 340, 349
HpyF3I	CTNAG	3 cut(s)	219, 306, 651
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	2 cut(s)	390, 946
Hsp92II	CATG	5 cut(s)	191, 342, 378, 763, 959
HspAI	GCGC	1 cut(s)	390
KasI	GGCGCC	1 cut(s)	389
KroI	GCCGGC	1 cut(s)	343
KroNI	GCCGGC	1 cut(s)	345
Kzo9I	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	793
Lsp1109I	GCAGC	2 cut(s)	824, 874
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	207, 618, 1041
MaeII	ACGT	1 cut(s)	164
MalI	GATC	7 cut(s)	132, 501, 543, 622, 626, 666, 990
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
MboII	GAAGA	6 cut(s)	72, 140, 220, 536, 655, 664
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	2 cut(s)	541, 664
MluCI	AATT	6 cut(s)	96, 115, 594, 835, 902, 972
Mly113I	GGCGCC	1 cut(s)	390
MmeI	TCCRAC	4 cut(s)	151, 431, 490, 826
MroNI	GCCGGC	1 cut(s)	343
MseI	TTAA	5 cut(s)	537, 597, 657, 698, 819
MslI	CAYNNNNRTG	1 cut(s)	954
MspA1I	CMGCKG	2 cut(s)	223, 815
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	755, 986
MunI	CAATTG	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	755, 986
MwoI	GCNNNNNNNGC	4 cut(s)	55, 299, 340, 349
NaeI	GCCGGC	1 cut(s)	345
NarI	GGCGCC	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
NgoMIV	GCCGGC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	191, 342, 378, 763, 959
NlaIV	GGNNCC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	706
PciI	ACATGT	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	210, 431, 557
PflFI	GACNNNGTC	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	984
PkrI	GCNGC	3 cut(s)	225, 814, 889
Ple19I	CGATCG	1 cut(s)	627
PluTI	GGCGCC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	165
PscI	ACATGT	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	753, 984
PspGI	CCWGG	2 cut(s)	753, 984
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	194, 467
PsuI	RGATCY	2 cut(s)	541, 664
PsyI	GACNNNGTC	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	1 cut(s)	723
RsaNI	GTAC	1 cut(s)	722
RseI	CAYNNNNRTG	1 cut(s)	954
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	5 cut(s)	537, 597, 657, 698, 819
SatI	GCNGC	3 cut(s)	224, 813, 888
Sau3AI	GATC	7 cut(s)	130, 499, 541, 620, 624, 664, 988
Sau96I	GGNCC	2 cut(s)	194, 467
ScrFI	CCNGG	2 cut(s)	755, 986
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	2 cut(s)	366, 495
SfiI	GGCCNNNNNGGCC	1 cut(s)	349
SfoI	GGCGCC	1 cut(s)	391
SinI	GGWCC	2 cut(s)	194, 467
SmiMI	CAYNNNNRTG	1 cut(s)	954
SpeI	ACTAGT	1 cut(s)	1040
Sse9I	AATT	6 cut(s)	96, 115, 594, 835, 902, 972
SseBI	AGGCCT	1 cut(s)	706
SsiI	CCGC	4 cut(s)	223, 334, 440, 487
SspDI	GGCGCC	1 cut(s)	389
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	3 cut(s)	207, 618, 1041
StuI	AGGCCT	1 cut(s)	706
StyD4I	CCNGG	2 cut(s)	753, 984
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	475, 970
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	434, 623
TaqII	GACCGA	1 cut(s)	484
TasI	AATT	6 cut(s)	96, 115, 594, 835, 902, 972
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	3 cut(s)	210, 431, 557
Tru1I	TTAA	5 cut(s)	537, 597, 657, 698, 819
Tru9I	TTAA	5 cut(s)	537, 597, 657, 698, 819
TscAI	CASTG	1 cut(s)	973
TseI	GCWGC	2 cut(s)	812, 887
TspDTI	ATGAA	6 cut(s)	108, 202, 363, 822, 1085, 1092
TspGWI	ACGGA	2 cut(s)	77, 1031
TspRI	CASTG	1 cut(s)	973
Tth111I	GACNNNGTC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	194, 467
XapI	RAATTY	1 cut(s)	835
XbaI	TCTAGA	2 cut(s)	206, 617
XceI	RCATGY	1 cut(s)	763
XmiI	GTMKAC	3 cut(s)	494, 636, 685
XspI	CTAG	3 cut(s)	207, 618, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.