Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

3509163 .. 3511899

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04560.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATGTTGAGGGCGATTTCGAGGCCGTTTGAGCGGTGTTGTGGGTTGAGGATTGGGAGTAGCGGCGGTGATGGGCTGCTTTGGCATACCGACTTGAAGCCTCACGCCTCCGGTGACTACTCGATCGCTGTGGTTCAGGCCAACTCGAGCCTTGAGGATCAGGGGCAGGTGTTTACTTCTCCCTCTGCCACGTACGTCGGCGTTTATGACGGTCACGGCGGCCCGGAAGCTTCTAGATTCGTCAACAACAATCTCTTCCCTTTCTTGCACAAGTTTGCGACGGAGCAAGGTGGGTTATCTGTGGATGTGATTAAGAAGGCGTTTAGTGCTACCGAGGAGGAGTTTCTGCGTTTGGTGAAGCAATCGTGGCCGGTGAAGCCGTCAATTGCTTCTGTGGGATCATGTTGTTTGGTCGGGGCTATAACGAATGATGTTTTGTATGTGGCGAATTTGGGGGACTCTAGAGCAGTGCTTGGCCGGAAAATTAACGGGAGTAGGAGCAAGGTGGTGGCGGAACGGTTGTCAACTGATCATAATGTGGGTGATGAGCAGGTCAGGAGAGAAGTTGAAGCACTTCATCCTGATGATTCGCATGTGGTGGTGTATACTCGCGGAGTTTGGAGAATAAAGGGCATAATTCAGGAATATTATCCTCCGCCTCCTGGTCCAGCATCTCTTACAGGTAAGTTAGAAGTGTTAGAATCCATGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

238

Amino Acids

25.76

Weight (kDa)

6.44

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	61 - 309	1.1e-40	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	2 cut(s)	157, 541
AccBSI	CCGCTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	605
AccII	CGCG	1 cut(s)	612
AciI	CCGC	7 cut(s)	34, 63, 66, 219, 512, 612, 656
AclWI	GGATC	2 cut(s)	165, 406
AcoI	YGGCCR	2 cut(s)	368, 475
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	2 cut(s)	97, 569
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AlwI	GGATC	2 cut(s)	165, 406
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	5 cut(s)	23, 138, 220, 368, 475
ApeKI	GCWGC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	2 cut(s)	221, 665
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	5 cut(s)	80, 125, 367, 385, 554
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	3 cut(s)	10, 232, 364
BciT130I	CCWGG	1 cut(s)	663
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	234, 462
BfuAI	ACCTGC	2 cut(s)	157, 541
BisI	GCNGC	3 cut(s)	64, 77, 220
BlsI	GCNGC	3 cut(s)	65, 78, 221
Bme1390I	CCNGG	2 cut(s)	224, 663
Bme18I	GGWCC	1 cut(s)	665
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	221, 665
BmrFI	CCNGG	2 cut(s)	224, 663
BmsI	GCATC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	224
BsaAI	YACGTR	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse118I	RCCGGY	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	310, 577
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseRI	GAGGAG	2 cut(s)	350, 353
BseXI	GCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	612
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	5 cut(s)	25, 140, 222, 370, 477
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	111, 224, 371, 478
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	25, 140, 222, 370, 477
BsoBI	CYCGRG	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	123, 157, 398, 529
BspACI	CCGC	7 cut(s)	34, 63, 66, 219, 512, 612, 656
BspANI	GGCC	5 cut(s)	25, 140, 222, 370, 477
BspFNI	CGCG	1 cut(s)	612
BspMI	ACCTGC	2 cut(s)	157, 541
BspPI	GGATC	2 cut(s)	165, 406
BsrBI	CCGCTC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	4 cut(s)	123, 157, 398, 529
BssNAI	GTATAC	1 cut(s)	606
Bst1107I	GTATAC	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	212, 519
Bst6I	CTCTTC	1 cut(s)	260
BstBAI	YACGTR	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	310, 577
BstFNI	CGCG	1 cut(s)	612
BstKTI	GATC	4 cut(s)	126, 160, 401, 532
BstMBI	GATC	4 cut(s)	123, 157, 398, 529
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 82, 326, 367, 376
BstNI	CCWGG	1 cut(s)	663
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	222, 661
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	63
BstZ17I	GTATAC	1 cut(s)	606
BsuRI	GGCC	5 cut(s)	25, 140, 222, 370, 477
BtsCI	GGATG	2 cut(s)	310, 577
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	2 cut(s)	157, 541
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	221, 665
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	3 cut(s)	402, 593, 706
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	4 cut(s)	125, 159, 400, 531
DpnII	GATC	4 cut(s)	123, 157, 398, 529
EaeI	YGGCCR	2 cut(s)	368, 475
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	2 cut(s)	527, 645
Eco47I	GGWCC	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	711
FaeI	CATG	3 cut(s)	405, 596, 709
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	401, 592, 705
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	3 cut(s)	64, 77, 220
FokI	GGATG	2 cut(s)	317, 564
Fsp4HI	GCNGC	3 cut(s)	64, 77, 220
FspBI	CTAG	2 cut(s)	234, 462
GluI	GCNGC	3 cut(s)	64, 77, 220
HaeIII	GGCC	5 cut(s)	25, 140, 222, 370, 477
HapII	CCGG	4 cut(s)	111, 224, 371, 478
Hin1II	CATG	3 cut(s)	405, 596, 709
HincII	GTYRAC	2 cut(s)	244, 525
HindII	GTYRAC	2 cut(s)	244, 525
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	4 cut(s)	237, 458, 587, 701
HpaII	CCGG	4 cut(s)	111, 224, 371, 478
HphI	GGTGA	5 cut(s)	80, 125, 367, 385, 554
Hpy166II	GTNNAC	4 cut(s)	174, 244, 525, 606
Hpy188III	TCNNGA	5 cut(s)	234, 462, 556, 581, 641
Hpy8I	GTNNAC	4 cut(s)	174, 244, 525, 606
Hpy99I	CGWCG	2 cut(s)	200, 283
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	212, 519
HpyCH4IV	ACGT	2 cut(s)	191, 195
HpyCH4V	TGCA	2 cut(s)	268, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 82, 326, 367, 376
HpySE526I	ACGT	2 cut(s)	191, 195
Hsp92II	CATG	3 cut(s)	405, 596, 709
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	123, 157, 398, 529
LmnI	GCTCC	2 cut(s)	283, 498
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	680
MaeI	CTAG	2 cut(s)	234, 462
MaeII	ACGT	2 cut(s)	191, 195
MaeIII	GTNAC	2 cut(s)	113, 212
MalI	GATC	4 cut(s)	125, 159, 400, 531
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	4 cut(s)	123, 157, 398, 529
MboII	GAAGA	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	384
MluCI	AATT	4 cut(s)	384, 448, 483, 636
MlyI	GAGTC	1 cut(s)	452
Mph1103I	ATGCAT	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	312, 486
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	4 cut(s)	111, 224, 371, 478
MspR9I	CCNGG	2 cut(s)	224, 663
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	5 cut(s)	31, 82, 326, 367, 376
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	123, 157, 398, 529
NlaIII	CATG	3 cut(s)	405, 596, 709
NmuCI	GTSAC	2 cut(s)	113, 212
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	145
PaqCI	CACCTGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	237, 587, 701
Pfl23II	CGTACG	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	65, 78, 221
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Ppu21I	YACGTR	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	661
PspGI	CCWGG	1 cut(s)	661
PspLI	CGTACG	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	221, 665
PspXI	VCTCGAGB	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	312, 486
SatI	GCNGC	3 cut(s)	64, 77, 220
Sau3AI	GATC	4 cut(s)	123, 157, 398, 529
Sau96I	GGNCC	2 cut(s)	221, 665
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	224, 663
SetI	ASST	8 cut(s)	171, 194, 198, 232, 292, 507, 555, 685
SfaNI	GCATC	1 cut(s)	680
Sfr274I	CTCGAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	145, 152
SmoI	CTYRAG	2 cut(s)	145, 152
Sse9I	AATT	4 cut(s)	384, 448, 483, 636
SsiI	CCGC	7 cut(s)	34, 63, 66, 219, 512, 612, 656
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	2 cut(s)	234, 462
StyD4I	CCNGG	2 cut(s)	222, 661
TaaI	ACNGT	2 cut(s)	212, 519
TaiI	ACGT	2 cut(s)	194, 198
TaqI	TCGA	3 cut(s)	20, 122, 146
TasI	AATT	4 cut(s)	384, 448, 483, 636
TauI	GCSGC	2 cut(s)	66, 222
TfiI	GAWTC	3 cut(s)	237, 587, 701
Tru1I	TTAA	2 cut(s)	312, 486
Tru9I	TTAA	2 cut(s)	312, 486
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	113, 212
TseI	GCWGC	1 cut(s)	76
Tsp45I	GTSAC	2 cut(s)	113, 212
TspDTI	ATGAA	1 cut(s)	566
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	448
XbaI	TCTAGA	2 cut(s)	233, 461
XceI	RCATGY	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	2 cut(s)	234, 462
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.