Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003711.1

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1909

Gene Structure 1909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003711.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1024 bp

tgtggttcaggccaattcgagccttgaggatcagggacaggtgtttacctctccctctgccacgtacgtcggcgtgtatgacggtcacggcggaccggaagcttctagattcgtcaacaataatctgttcccctttttacacaaatttgccatggaacaaggtgggttatccgaggatgtgataaggaaggcgttcagtgccactgaggaggagtttctgcgtttggtgaagcgatcgtgggcgatgaagccttcaattgcttctgtcgggtcatgttgtttggtcggggctataacaaatgatgttctgtatgttgcgaatctgggggattcgagagcagtccttggccggaaagtgaacgggagtaagaggacggtgatggcagaacggttgtcaacggatcacaatgtcagtgatgagcaggtcaggagggaagttgaagcacttcatcctgacgattcacatgttgtggtgtatactcgcggagtttggaggataaaggggataattcaggtgtcaagatctattggggatgtttatctaaagaagcctgagtttaacagagacccaatgtaccagcagtttattacccctgttcctatgaagcggccagtggtgacagcagagccctccatccttattagaaacattaagccacaggatatgtttttgatattcgcatcagatggcctatgggaacagttgagtgatgaggcagcagtagagctagtcttcaagaaccctagagcgggtattgccaagagactggtaagagctgctctccatgaagccgccaagaagagggaaatgagatatgatgacataaagaaaattgaaaagggaataaggcggcattttcatgatgatattactgtcattgtagtctatcttgatcagcacaaaagctcctcaaaacataaactcggcaacaatgctctaagttccatcacccaagcacctgttgacatttactcgcttagtgcagaggaagtagaacaggatatgcatcataccattaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

340

Amino Acids

38.18

Weight (kDa)

8.39

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	1 cut(s)	484
AciI	CCGC	6 cut(s)	91, 484, 608, 750, 793, 851
AclWI	GGATC	2 cut(s)	37, 409
AcoI	YGGCCR	2 cut(s)	347, 609
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	2 cut(s)	66, 576
AfiI	CCNNNNNNNGG	3 cut(s)	749, 750, 802
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	4 cut(s)	256, 441, 737, 837
AluBI	AGCT	4 cut(s)	102, 728, 777, 907
AluI	AGCT	4 cut(s)	102, 728, 777, 907
Alw26I	GTCTC	2 cut(s)	559, 758
AlwI	GGATC	2 cut(s)	37, 409
AoxI	GGCC	4 cut(s)	10, 347, 609, 689
ApeKI	GCWGC	2 cut(s)	717, 777
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	2 cut(s)	192, 445
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	4 cut(s)	239, 389, 629, 941
AvaII	GGWCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	729, 764
BccI	CCATC	4 cut(s)	374, 642, 681, 954
BceAI	ACGGC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	893
BcoDI	GTCTC	2 cut(s)	559, 758
BfaI	CTAG	3 cut(s)	106, 729, 745
BfuAI	ACCTGC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	5 cut(s)	609, 718, 778, 793, 852
BlsI	GCNGC	5 cut(s)	610, 719, 779, 794, 853
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmsI	GCATC	2 cut(s)	690, 1016
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	766, 798
BpuEI	CTTGAG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	2 cut(s)	538, 1006
BsaI	GGTCTC	1 cut(s)	559
BsaJI	CCNNGG	3 cut(s)	151, 172, 344
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	749, 750, 802
Bse1I	ACTGG	2 cut(s)	612, 772
Bse8I	GATNNNNATC	2 cut(s)	538, 1006
BseDI	CCNNGG	3 cut(s)	151, 172, 344
BseGI	GGATG	4 cut(s)	182, 449, 539, 634
BseJI	GATNNNNATC	2 cut(s)	538, 1006
BseLI	CCNNNNNNNGG	3 cut(s)	749, 750, 802
BseMII	CTCAG	2 cut(s)	196, 544
BseNI	ACTGG	2 cut(s)	612, 772
BseRI	GAGGAG	3 cut(s)	222, 225, 899
BseXI	GCAGC	2 cut(s)	729, 764
BsgI	GTGCAG	1 cut(s)	1003
Bsh1236I	CGCG	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	4 cut(s)	12, 349, 611, 691
BsiEI	CGRYCG	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	96, 350
BsiWI	CGTACG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	749, 750, 802
BsmAI	GTCTC	2 cut(s)	559, 758
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	4 cut(s)	12, 349, 611, 691
Bso31I	GGTCTC	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	29, 234, 401, 522, 893
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	6 cut(s)	91, 484, 608, 750, 793, 851
BspANI	GGCC	4 cut(s)	12, 349, 611, 691
BspCNI	CTCAG	2 cut(s)	197, 545
BspFNI	CGCG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	860
BspMI	ACCTGC	1 cut(s)	413
BspPI	GGATC	2 cut(s)	37, 409
BspTNI	GGTCTC	1 cut(s)	559
BsrBI	CCGCTC	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	612, 772
BssECI	CCNNGG	3 cut(s)	151, 172, 344
BssMI	GATC	5 cut(s)	29, 234, 401, 522, 893
BssNAI	GTATAC	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	151, 344
Bst1107I	GTATAC	1 cut(s)	478
Bst4CI	ACNGT	5 cut(s)	84, 377, 391, 703, 875
Bst6I	CTCTTC	1 cut(s)	795
BstBAI	YACGTR	1 cut(s)	64
BstDEI	CTNAG	4 cut(s)	205, 553, 939, 978
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	4 cut(s)	182, 449, 539, 634
BstFNI	CGCG	1 cut(s)	484
BstKTI	GATC	5 cut(s)	32, 237, 404, 525, 896
BstMAI	GTCTC	2 cut(s)	559, 758
BstMBI	GATC	5 cut(s)	29, 234, 401, 522, 893
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 756
BstNSI	RCATGY	1 cut(s)	468
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	729, 764
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	522
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	522
BstZ17I	GTATAC	1 cut(s)	478
BsuRI	GGCC	4 cut(s)	12, 349, 611, 691
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	182, 449, 539, 634
BtsIMutI	CAGTG	4 cut(s)	202, 203, 419, 619
BveI	ACCTGC	1 cut(s)	413
CciI	TCATGA	1 cut(s)	860
Cfr13I	GGNCC	1 cut(s)	93
CpoI	CGGWCCG	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	65, 575
CspI	CGGWCCG	1 cut(s)	93
CviAII	CATG	5 cut(s)	152, 274, 465, 786, 861
CviQI	GTAC	2 cut(s)	65, 575
DdeI	CTNAG	4 cut(s)	205, 553, 939, 978
DpnI	GATC	5 cut(s)	31, 236, 403, 524, 895
DpnII	GATC	5 cut(s)	29, 234, 401, 522, 893
EaeI	YGGCCR	2 cut(s)	347, 609
Eam1104I	CTCTTC	1 cut(s)	795
EarI	CTCTTC	1 cut(s)	795
EciI	GGCGGA	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	151, 344
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	151, 344
EcoT22I	ATGCAT	1 cut(s)	1009
EcoT38I	GRGCYC	1 cut(s)	631
ErhI	CCWWGG	2 cut(s)	151, 344
FaeI	CATG	5 cut(s)	155, 277, 468, 789, 864
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	5 cut(s)	151, 273, 464, 785, 860
FauI	CCCGC	1 cut(s)	743
FbaI	TGATCA	1 cut(s)	893
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	5 cut(s)	609, 718, 778, 793, 852
FokI	GGATG	4 cut(s)	189, 436, 546, 621
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	5 cut(s)	609, 718, 778, 793, 852
FspBI	CTAG	3 cut(s)	106, 729, 745
GluI	GCNGC	5 cut(s)	609, 718, 778, 793, 852
HaeIII	GGCC	4 cut(s)	12, 349, 611, 691
HapII	CCGG	2 cut(s)	96, 350
Hin1II	CATG	5 cut(s)	155, 277, 468, 789, 864
HincII	GTYRAC	3 cut(s)	116, 397, 965
HindII	GTYRAC	3 cut(s)	116, 397, 965
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	4 cut(s)	109, 320, 330, 459
HpaII	CCGG	2 cut(s)	96, 350
HphI	GGTGA	4 cut(s)	239, 389, 629, 941
Hpy166II	GTNNAC	6 cut(s)	46, 116, 359, 397, 478, 965
Hpy188I	TCNGA	2 cut(s)	173, 686
Hpy188III	TCNNGA	8 cut(s)	106, 334, 428, 453, 520, 737, 861, 891
Hpy8I	GTNNAC	6 cut(s)	46, 116, 359, 397, 478, 965
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	182, 262
HpyCH4III	ACNGT	5 cut(s)	84, 377, 391, 703, 875
HpyCH4IV	ACGT	2 cut(s)	63, 67
HpyCH4V	TGCA	2 cut(s)	984, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 756
HpyF3I	CTNAG	4 cut(s)	205, 553, 939, 978
HpySE526I	ACGT	2 cut(s)	63, 67
Hsp92II	CATG	5 cut(s)	155, 277, 468, 789, 864
Ksp22I	TGATCA	1 cut(s)	893
Kzo9I	GATC	5 cut(s)	29, 234, 401, 522, 893
LmnI	GCTCC	1 cut(s)	912
Lsp1109I	GCAGC	2 cut(s)	729, 764
LweI	GCATC	2 cut(s)	690, 1016
MaeI	CTAG	3 cut(s)	106, 729, 745
MaeII	ACGT	2 cut(s)	63, 67
MaeIII	GTNAC	2 cut(s)	84, 617
MalI	GATC	5 cut(s)	31, 236, 403, 524, 895
MbiI	CCGCTC	1 cut(s)	750
MboI	GATC	5 cut(s)	29, 234, 401, 522, 893
MboII	GAAGA	2 cut(s)	725, 812
MfeI	CAATTG	1 cut(s)	256
MflI	RGATCY	1 cut(s)	522
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	5 cut(s)	14, 144, 256, 508, 832
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	2 cut(s)	192, 445
MseI	TTAA	3 cut(s)	559, 652, 1018
MslI	CAYNNNNRTG	1 cut(s)	859
MspI	CCGG	2 cut(s)	96, 350
MunI	CAATTG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	198, 756
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	5 cut(s)	29, 234, 401, 522, 893
NlaIII	CATG	5 cut(s)	155, 277, 468, 789, 864
NmeAIII	GCCGAG	1 cut(s)	904
NmuCI	GTSAC	2 cut(s)	84, 617
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	468
PagI	TCATGA	1 cut(s)	860
PciI	ACATGT	1 cut(s)	464
PdmI	GAANNNNTTC	2 cut(s)	192, 445
PfeI	GAWTC	4 cut(s)	109, 320, 330, 459
Pfl23II	CGTACG	1 cut(s)	64
PkrI	GCNGC	5 cut(s)	610, 719, 779, 794, 853
Ple19I	CGATCG	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	64
PscI	ACATGT	1 cut(s)	464
PspLI	CGTACG	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	522
PvuI	CGATCG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	66, 576
RsaNI	GTAC	2 cut(s)	65, 575
RseI	CAYNNNNRTG	1 cut(s)	859
Rsr2I	CGGWCCG	1 cut(s)	93
RsrII	CGGWCCG	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	559, 652, 1018
SatI	GCNGC	5 cut(s)	609, 718, 778, 793, 852
Sau3AI	GATC	5 cut(s)	29, 234, 401, 522, 893
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	690, 1016
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	859
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	5 cut(s)	14, 144, 256, 508, 832
SsiI	CCGC	6 cut(s)	91, 484, 608, 750, 793, 851
SspMI	CTAG	3 cut(s)	106, 729, 745
StyI	CCWWGG	2 cut(s)	151, 344
TaaI	ACNGT	5 cut(s)	84, 377, 391, 703, 875
TaiI	ACGT	2 cut(s)	66, 70
TaqI	TCGA	2 cut(s)	18, 333
TasI	AATT	5 cut(s)	14, 144, 256, 508, 832
TauI	GCSGC	3 cut(s)	611, 795, 854
TfiI	GAWTC	4 cut(s)	109, 320, 330, 459
Tru1I	TTAA	3 cut(s)	559, 652, 1018
Tru9I	TTAA	3 cut(s)	559, 652, 1018
TscAI	CASTG	4 cut(s)	203, 209, 419, 619
TseFI	GTSAC	2 cut(s)	84, 617
TseI	GCWGC	2 cut(s)	717, 777
Tsp45I	GTSAC	2 cut(s)	84, 617
TspDTI	ATGAA	5 cut(s)	261, 438, 618, 802, 849
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	4 cut(s)	203, 209, 419, 619
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	1 cut(s)	144
XbaI	TCTAGA	1 cut(s)	105
XceI	RCATGY	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	2 cut(s)	192, 445
XspI	CTAG	3 cut(s)	106, 729, 745
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.