Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Reverse (-)

67930686 .. 67931084

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG524200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAAAGAAAGAGAGGACCTTTTTCTGCTTGTGCTTCTGGGCATGATGATGTTGGTGCGTACGGGATTCAGAGCAGCTTTGGCGGCAGAGATGGTGTCATTTTGGATCTGCATAAGCGCAGCCCTCTTGGACCTCTTCTTGACAACAGGCTTTCCGAGAGCGGAGCTGGGGCTAGTACCTCTGGGCGGTGGGGGGTGAAGCCGCATAAGGAGGAGGAGGAGCCGACGACTGCGCCGTCGCTTTTGTCCTACAAGCTGATTCAGCGCATGGAGAGGCTCGGAGGGGAGCTCTGCTTGCAGAGCCTCAGCAACCGAGTCACTGAGATGGAGTCGCGATTCGATCGCCTCGCGAAGATCAAGGCCGCCACAGCCGGCCTTTGCGATCTGAAGTACACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

8.86

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccBSI	CCGCTC	1 cut(s)	162
AccII	CGCG	2 cut(s)	334, 350
AciI	CCGC	5 cut(s)	84, 162, 187, 203, 363
AclWI	GGATC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	62, 178, 392
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	393
AluBI	AGCT	4 cut(s)	78, 167, 256, 289
AluI	AGCT	4 cut(s)	78, 167, 256, 289
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	360, 373
ApeKI	GCWGC	2 cut(s)	75, 120
AspLEI	GCGC	3 cut(s)	120, 235, 267
AspS9I	GGNCC	2 cut(s)	17, 131
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	17, 131
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	87, 132
BccI	CCATC	2 cut(s)	86, 319
BceAI	ACGGC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	5 cut(s)	76, 85, 121, 203, 363
BlsI	GCNGC	5 cut(s)	77, 86, 122, 204, 364
Bme18I	GGWCC	2 cut(s)	17, 131
BmgT120I	GGNCC	2 cut(s)	17, 131
BmiI	GGNNCC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
Bpu10I	CCTNAGC	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	312, 319
BseRI	GAGGAG	3 cut(s)	227, 230, 233
BseXI	GCAGC	2 cut(s)	87, 132
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	334, 350
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	362, 375
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	372
BsiWI	CGTACG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	2 cut(s)	362, 375
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	106, 340, 354, 382
Bsp68I	TCGCGA	2 cut(s)	334, 350
BspACI	CCGC	5 cut(s)	84, 162, 187, 203, 363
BspANI	GGCC	2 cut(s)	362, 375
BspCNI	CTCAG	2 cut(s)	313, 318
BspFNI	CGCG	2 cut(s)	334, 350
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	4 cut(s)	106, 340, 354, 382
Bst6I	CTCTTC	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	296, 373
BstDEI	CTNAG	2 cut(s)	305, 321
BstFNI	CGCG	2 cut(s)	334, 350
BstHHI	GCGC	3 cut(s)	120, 235, 267
BstKTI	GATC	4 cut(s)	109, 343, 357, 385
BstMBI	GATC	4 cut(s)	106, 340, 354, 382
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 84, 262, 295, 300, 368
BstUI	CGCG	2 cut(s)	334, 350
BstV1I	GCAGC	2 cut(s)	87, 132
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	362, 375
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	2 cut(s)	334, 350
Cac8I	GCNNGC	2 cut(s)	296, 373
CfoI	GCGC	3 cut(s)	120, 235, 267
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	17, 131
Csp6I	GTAC	3 cut(s)	61, 177, 391
CviAII	CATG	2 cut(s)	44, 268
CviQI	GTAC	3 cut(s)	61, 177, 391
DdeI	CTNAG	2 cut(s)	305, 321
DpnI	GATC	4 cut(s)	108, 342, 356, 384
DpnII	GATC	4 cut(s)	106, 340, 354, 382
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	17, 131
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	2 cut(s)	47, 271
FaiI	YATR	4 cut(s)	45, 114, 207, 269
FatI	CATG	2 cut(s)	43, 267
Fnu4HI	GCNGC	5 cut(s)	76, 85, 121, 203, 363
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	5 cut(s)	76, 85, 121, 203, 363
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	3 cut(s)	119, 234, 266
GluI	GCNGC	5 cut(s)	76, 85, 121, 203, 363
GsaI	CCCAGC	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	362, 375
HapII	CCGG	1 cut(s)	372
HhaI	GCGC	3 cut(s)	120, 235, 267
Hin1II	CATG	2 cut(s)	47, 271
Hin6I	GCGC	3 cut(s)	118, 233, 265
HinP1I	GCGC	3 cut(s)	118, 233, 265
HinfI	GANTC	5 cut(s)	67, 259, 315, 329, 336
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	72, 157, 281, 387
Hpy188III	TCNNGA	3 cut(s)	140, 333, 349
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	2 cut(s)	229, 241
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	3 cut(s)	4, 112, 298
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 84, 262, 295, 300, 368
HpyF3I	CTNAG	2 cut(s)	305, 321
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	47, 271
HspAI	GCGC	3 cut(s)	118, 233, 265
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	106, 340, 354, 382
LmnI	GCTCC	3 cut(s)	164, 220, 286
LpnPI	CCDG	5 cut(s)	24, 133, 153, 168, 385
Lsp1109I	GCAGC	2 cut(s)	87, 132
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	4 cut(s)	108, 342, 356, 384
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	4 cut(s)	106, 340, 354, 382
MboII	GAAGA	2 cut(s)	128, 364
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	324, 338
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	2 cut(s)	48, 323
MspI	CCGG	1 cut(s)	372
MvnI	CGCG	2 cut(s)	334, 350
MwoI	GCNNNNNNNGC	6 cut(s)	81, 84, 262, 295, 300, 368
NaeI	GCCGGC	1 cut(s)	373
NdeII	GATC	4 cut(s)	106, 340, 354, 382
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	47, 271
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	316
NruI	TCGCGA	2 cut(s)	334, 350
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	3 cut(s)	67, 259, 336
Pfl23II	CGTACG	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	77, 86, 122, 204, 364
Ple19I	CGATCG	1 cut(s)	343
PleI	GAGTC	2 cut(s)	323, 337
PpsI	GAGTC	2 cut(s)	323, 337
Ppu21I	YACGTR	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	167
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	17, 131
PspPPI	RGGWCCY	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	343
RruI	TCGCGA	2 cut(s)	334, 350
RsaI	GTAC	3 cut(s)	62, 178, 392
RsaNI	GTAC	3 cut(s)	61, 177, 391
RseI	CAYNNNNRTG	2 cut(s)	48, 323
SacI	GAGCTC	1 cut(s)	291
SatI	GCNGC	5 cut(s)	76, 85, 121, 203, 363
Sau3AI	GATC	4 cut(s)	106, 340, 354, 382
Sau96I	GGNCC	2 cut(s)	17, 131
SchI	GAGTC	2 cut(s)	324, 338
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	22, 80, 136, 169, 182, 258, 291, 398
SinI	GGWCC	2 cut(s)	17, 131
SmiMI	CAYNNNNRTG	2 cut(s)	48, 323
SsiI	CCGC	5 cut(s)	84, 162, 187, 203, 363
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	291
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	339
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	3 cut(s)	87, 205, 365
TfiI	GAWTC	3 cut(s)	67, 259, 336
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	75, 120
Tsp45I	GTSAC	1 cut(s)	316
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	17, 131
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.