MD10G1102000.v1.1

phosphatase 2c

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
16632027 .. 16634500
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1102000.v1.1.491

Sequence Viewer

Length: 1149 bp
ATGCTGCGCTCGTGCTACAGGCTGCTCGAGCGCTGTTTGAGGTTGCGATGTGGTGCTGGGGGCGGAGGCGATGGCCTTTGGCACATGGACTTGGAGTCCCACGCCTCCGGTGACTACTCGATCGCTGTGGTTCAGGCCAATTCGAATTTGGAGGATCAAGGTCAGGTCTTCACCTCGCCCTCTGCAACGTATGTTGGTGTTTATGATGGCCATGGCGGTCCCCAAGCTTCTAGATTCGTCAACAACCATCTCCTCCCATATTTACACAAATTTGCGATGGAACAAGGGGGATTGTCAGCAGATGTGATAAAGAAGGCATTCAGTGCCACTGAAGAAGATTTTTTGCATTTGGTGAAGCGATCTTTGCCAAAGATGCCCCAAATCGCTTCCGTTGGTTCGTGTTGCCTTGTGGGAGCAATATCAAATGATGTTCTATATGTAGCCAATCTAGGGGACTCGAGAGCTGTCCTTGGCCGGAGAGTTTCGGATAGTAAGAGGAGTCCGGTGGTGGCAGAACGCTTGTCCACTGATCACAATGTGGGAGTTGAGGAGGTCAGGAAGGAGGTTGAAGCACTACATCCCGATGATTCACATGCTGTGGTGTATATTCATGGAGTTTGGAGGATAAAAGGCATAATTCAGGTGTCAAGATCTATTGGTGATGTTTATTTAAAGAAGCCGGAGTTTAACAGAGACCCCATATACCAGCAATTTGCGAACCCTGTTCCTATGAAACGGCCAGTGATGACTGCAGAGCCCTCAATCATTACAAGGAACCTTAAGCCACAGGATCTGTTTTTGATCTTTGCCTCAGATGGCCTATGGGAACAGTTGAGCGATGATGCAGCAGTAGAAATTGTTTTCAAAAACCCAAGAGCTGGTATTGCAAAGAGATTAGTAAGAGCTGCTCTTGAAGAAGCTGCAAAGAAGAGGGAGATGAGATACAATGACATAACGAAAATCAAAAAGGGAATAAGGCGGCACTTTCATGATGACATCACTGTTATAGTAGTCTATCTTGATGACCACAAAAGCTCCTCGAAATGTAAATCTAAGAATATCATTGTTGGCTCTACCAGAGCACCTGCTGATATTTTCTCGGTCAGTGCAGATAAAGCGGAGCAGGATCTGCATCACATGATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

383

Amino Acids

42.37

Weight (kDa)

8.6

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 60 - 310 1.4e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1093
Acc36I ACCTGC 1 cut(s) 1093
AccB7I CCANNNNNTGG 1 cut(s) 878
AciI CCGC 4 cut(s) 63, 216, 979, 1118
AclWI GGATC 3 cut(s) 162, 798, 1134
AcoI YGGCCR 3 cut(s) 208, 472, 737
AcsI RAATTY 2 cut(s) 145, 269
AcuI CTGAAG 1 cut(s) 351
AdeI CACNNNGTG 1 cut(s) 538
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 450, 878
AflII CTTAAG 1 cut(s) 779
AgsI TTSAA 3 cut(s) 569, 865, 914
AhdI GACNNNNNGTC 1 cut(s) 94
AluBI AGCT 6 cut(s) 227, 464, 878, 905, 920, 1035
AluI AGCT 6 cut(s) 227, 464, 878, 905, 920, 1035
Alw21I GWGCWC 1 cut(s) 1084
Alw26I GTCTC 1 cut(s) 687
AlwI GGATC 3 cut(s) 162, 798, 1134
AlwNI CAGNNNCTG 2 cut(s) 793, 1129
Ama87I CYCGRG 2 cut(s) 26, 457
Aor51HI AGCGCT 1 cut(s) 32
AoxI GGCC 6 cut(s) 73, 135, 208, 472, 737, 817
ApeKI GCWGC 5 cut(s) 4, 22, 845, 905, 920
ApoI RAATTY 2 cut(s) 145, 269
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 9, 33
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 122, 163, 364, 671
AsuII TTCGAA 1 cut(s) 143
AvaI CYCGRG 2 cut(s) 26, 457
AvaII GGWCC 1 cut(s) 218
BalI TGGCCA 1 cut(s) 210
BanII GRGCYC 1 cut(s) 759
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 1084
BbvI GCAGC 4 cut(s) 9, 857, 892, 907
BccI CCATC 5 cut(s) 65, 200, 255, 271, 809
BceAI ACGGC 1 cut(s) 752
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 687
BfaI CTAG 2 cut(s) 231, 449
BfmI CTRYAG 2 cut(s) 16, 750
BfoI RGCGCY 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 779
BfuAI ACCTGC 1 cut(s) 1093
BglII AGATCT 1 cut(s) 650
BisI GCNGC 6 cut(s) 5, 23, 846, 906, 921, 980
BlsI GCNGC 6 cut(s) 6, 24, 847, 907, 922, 981
Bme18I GGWCC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 94
BmeT110I CYCGRG 2 cut(s) 26, 457
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 220, 776
BmsI GCATC 3 cut(s) 363, 832, 1141
BpiI GAAGAC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 1131
BsaI GGTCTC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 211, 469
BsaWI WCCGGW 2 cut(s) 107, 502
BsaXI ACNNNNNCTCC 2 cut(s) 1019, 1049
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 878
Bse1I ACTGG 1 cut(s) 740
Bse8I GATNNNNATC 1 cut(s) 1131
BseDI CCNNGG 2 cut(s) 211, 469
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 2 cut(s) 450, 878
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 4 cut(s) 242, 511, 563, 1027
BseXI GCAGC 4 cut(s) 9, 857, 892, 907
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 1128
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 6 cut(s) 75, 137, 210, 474, 739, 819
BsiEI CGRYCG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 1084
BsiHKCI CYCGRG 2 cut(s) 26, 457
BsiSI CCGG 4 cut(s) 108, 475, 503, 680
BslFI GGGAC 3 cut(s) 82, 204, 467
BslI CCNNNNNNNGG 2 cut(s) 450, 878
BsmAI GTCTC 1 cut(s) 687
BsmFI GGGAC 3 cut(s) 82, 204, 467
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 6 cut(s) 75, 137, 210, 474, 739, 819
Bso31I GGTCTC 1 cut(s) 687
BsoBI CYCGRG 2 cut(s) 26, 457
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 759, 1084
Bsp143I GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 4 cut(s) 63, 216, 979, 1118
BspANI GGCC 6 cut(s) 75, 137, 210, 474, 739, 819
BspCNI CTCAG 1 cut(s) 824
BspHI TCATGA 2 cut(s) 988, 1145
BspLI GGNNCC 2 cut(s) 220, 776
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 1093
BspPI GGATC 3 cut(s) 162, 798, 1134
BspT104I TTCGAA 1 cut(s) 143
BspTI CTTAAG 1 cut(s) 779
BspTNI GGTCTC 1 cut(s) 687
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 2 cut(s) 211, 469
BssMI GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 211, 469
Bst2BI CACGAG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 831, 1003
Bst6I CTCTTC 1 cut(s) 923
BstAFI CTTAAG 1 cut(s) 779
BstAPI GCANNNNNTGC 2 cut(s) 323, 1129
BstBI TTCGAA 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 811, 1053
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 2 cut(s) 9, 33
BstKTI GATC 9 cut(s) 123, 157, 362, 532, 653, 793, 804, 1129, 1143
BstMAI GTCTC 1 cut(s) 687
BstMBI GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 7 cut(s) 28, 323, 364, 373, 884, 1115, 1129
BstNSI RCATGY 1 cut(s) 596
BstSFI CTRYAG 2 cut(s) 16, 750
BstV1I GCAGC 4 cut(s) 9, 857, 892, 907
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 3 cut(s) 650, 790, 1126
BstYI RGATCY 3 cut(s) 650, 790, 1126
BsuRI GGCC 6 cut(s) 75, 137, 210, 474, 739, 819
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 4 cut(s) 61, 84, 290, 852
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 6 cut(s) 327, 328, 525, 747, 999, 1111
BveI ACCTGC 1 cut(s) 1093
CaiI CAGNNNCTG 2 cut(s) 793, 1129
CciI TCATGA 2 cut(s) 988, 1145
CfoI GCGC 2 cut(s) 9, 33
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 7 cut(s) 85, 212, 593, 611, 989, 1138, 1146
DdeI CTNAG 2 cut(s) 811, 1053
DpnI GATC 9 cut(s) 122, 156, 361, 531, 652, 792, 803, 1128, 1142
DpnII GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
DraI TTTAAA 1 cut(s) 672
DraIII CACNNNGTG 1 cut(s) 538
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 3 cut(s) 208, 472, 737
Eam1104I CTCTTC 1 cut(s) 923
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 923
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 211, 469
Eco24I GRGCYC 1 cut(s) 759
Eco31I GGTCTC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 218
Eco47III AGCGCT 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 2 cut(s) 26, 457
EcoT14I CCWWGG 2 cut(s) 211, 469
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 2 cut(s) 211, 469
FaeI CATG 7 cut(s) 88, 215, 596, 614, 992, 1141, 1149
FaqI GGGAC 3 cut(s) 82, 204, 467
FatI CATG 7 cut(s) 84, 211, 592, 610, 988, 1137, 1145
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 6 cut(s) 5, 23, 846, 906, 921, 980
FokI GGATG 1 cut(s) 564
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 6 cut(s) 5, 23, 846, 906, 921, 980
FspBI CTAG 2 cut(s) 231, 449
GlaI GCGC 2 cut(s) 8, 32
GluI GCNGC 6 cut(s) 5, 23, 846, 906, 921, 980
GsaI CCCAGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 6 cut(s) 75, 137, 210, 474, 739, 819
HapII CCGG 4 cut(s) 108, 475, 503, 680
HhaI GCGC 2 cut(s) 9, 33
Hin1II CATG 7 cut(s) 88, 215, 596, 614, 992, 1141, 1149
Hin6I GCGC 2 cut(s) 7, 31
HinP1I GCGC 2 cut(s) 7, 31
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 5 cut(s) 95, 234, 455, 499, 587
HpaII CCGG 4 cut(s) 108, 475, 503, 680
HphI GGTGA 4 cut(s) 122, 163, 364, 671
Hpy166II GTNNAC 2 cut(s) 241, 525
Hpy188I TCNGA 2 cut(s) 487, 814
Hpy188III TCNNGA 9 cut(s) 231, 459, 556, 581, 648, 911, 989, 1019, 1146
Hpy8I GTNNAC 2 cut(s) 241, 525
HpyAV CCTTC 2 cut(s) 307, 553
HpyCH4III ACNGT 2 cut(s) 831, 1003
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 8 cut(s) 185, 346, 752, 845, 887, 923, 1109, 1132
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 323, 364, 373, 884, 1115, 1129
HpyF3I CTNAG 2 cut(s) 811, 1053
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 7 cut(s) 88, 215, 596, 614, 992, 1141, 1149
HspAI GCGC 2 cut(s) 7, 31
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
LmnI GCTCC 3 cut(s) 413, 1040, 1120
Lsp1109I GCAGC 4 cut(s) 9, 857, 892, 907
LweI GCATC 3 cut(s) 363, 832, 1141
MaeI CTAG 2 cut(s) 231, 449
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 110
MalI GATC 9 cut(s) 122, 156, 361, 531, 652, 792, 803, 1128, 1142
MboI GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
MboII GAAGA 5 cut(s) 160, 344, 347, 926, 940
MflI RGATCY 3 cut(s) 650, 790, 1126
MhlI GDGCHC 2 cut(s) 759, 1084
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 6 cut(s) 139, 145, 269, 636, 710, 855
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 3 cut(s) 104, 449, 508
Mox20I TGGCCA 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 317
MscI TGGCCA 1 cut(s) 210
MseI TTAA 3 cut(s) 671, 687, 780
MslI CAYNNNNRTG 2 cut(s) 582, 987
Msp20I TGGCCA 1 cut(s) 210
MspCI CTTAAG 1 cut(s) 779
MspI CCGG 4 cut(s) 108, 475, 503, 680
Mva1269I GAATGC 1 cut(s) 317
MwoI GCNNNNNNNGC 7 cut(s) 28, 323, 364, 373, 884, 1115, 1129
NcoI CCATGG 1 cut(s) 211
NdeII GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
NlaIII CATG 7 cut(s) 88, 215, 596, 614, 992, 1141, 1149
NlaIV GGNNCC 2 cut(s) 220, 776
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 596
NspV TTCGAA 1 cut(s) 143
PaeR7I CTCGAG 2 cut(s) 26, 457
PagI TCATGA 2 cut(s) 988, 1145
PaqCI CACCTGC 1 cut(s) 1093
PctI GAATGC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 234, 587
PflMI CCANNNNNTGG 1 cut(s) 878
PkrI GCNGC 6 cut(s) 6, 24, 847, 907, 922, 981
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 3 cut(s) 103, 449, 507
PpsI GAGTC 3 cut(s) 103, 449, 507
PspFI CCCAGC 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 220, 776
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 26
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 2 cut(s) 793, 1129
PsuI RGATCY 3 cut(s) 650, 790, 1126
PvuI CGATCG 1 cut(s) 123
RseI CAYNNNNRTG 2 cut(s) 582, 987
SaqAI TTAA 3 cut(s) 671, 687, 780
SatI GCNGC 6 cut(s) 5, 23, 846, 906, 921, 980
Sau3AI GATC 9 cut(s) 120, 154, 359, 529, 650, 790, 801, 1126, 1140
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 3 cut(s) 104, 449, 508
SduI GDGCHC 2 cut(s) 759, 1084
SfaNI GCATC 3 cut(s) 363, 832, 1141
SfcI CTRYAG 2 cut(s) 16, 750
Sfr274I CTCGAG 2 cut(s) 26, 457
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 2 cut(s) 26, 457
SmiMI CAYNNNNRTG 2 cut(s) 582, 987
SmlI CTYRAG 3 cut(s) 26, 457, 779
SmoI CTYRAG 3 cut(s) 26, 457, 779
Sse9I AATT 6 cut(s) 139, 145, 269, 636, 710, 855
SsiI CCGC 4 cut(s) 63, 216, 979, 1118
SspMI CTAG 2 cut(s) 231, 449
StyI CCWWGG 2 cut(s) 211, 469
TaaI ACNGT 2 cut(s) 831, 1003
TaiI ACGT 1 cut(s) 191
TaqI TCGA 5 cut(s) 27, 119, 143, 458, 1040
TaqII GACCGA 1 cut(s) 1090
TasI AATT 6 cut(s) 139, 145, 269, 636, 710, 855
TauI GCSGC 1 cut(s) 982
TfiI GAWTC 2 cut(s) 234, 587
Tru1I TTAA 3 cut(s) 671, 687, 780
Tru9I TTAA 3 cut(s) 671, 687, 780
TscAI CASTG 6 cut(s) 328, 334, 532, 747, 1006, 1111
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 5 cut(s) 4, 22, 845, 905, 920
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 599, 746, 977
TspGWI ACGGA 1 cut(s) 379
TspRI CASTG 6 cut(s) 328, 334, 532, 747, 1006, 1111
Van91I CCANNNNNTGG 1 cut(s) 878
Vha464I CTTAAG 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 145, 269
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XhoI CTCGAG 2 cut(s) 26, 457
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 2 cut(s) 231, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.