Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

48174916 .. 48175616

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAAAGAAAGAGAGGACCATTTTCTGCTTGTGCTTCTGGGCATGATGATGTTGGTATGTATGGGATTCAAAGCAGCTTTGGCGGCAGAGATGGTGTCTTTTTGGATCTACATAAGCGCAGCCCTCTTGGACTTCTTCTCGACAACAGGCTTTCCGAGAGTGGAGCTGGGGCTAGTGCCTCTGGGCGGTGGGGGGTGAAGCCGCATAAGGAGGAGGAGGAGCCGACGACTGCGCCGTCGCTTTTGTCCTACAAGCTGATTCAGCGCCTGGAGAGGCTTGGAGGTGAGCTTTGCTTGCAGAGCCTCAACGACCTAGTCACTGAGCTGGAGTCGCTATTCGATCACCTCGCGAAGATCAAGGCTTCTGCTGCCGGCCTTTGCAATCTGAAGTACACGTACGCAGCGGAGATCAAGGTGGGGCCGGAGAAGAAGATTAGCGAAGCTTCCCTCGATAATCCTCATCTCCAGCATCGCCACCGAGTCCTTGCACGGATTCGCCAGATCGAAGTCATCTGGTGTGACTCGTCAAAGTCCACTACTCCCTTGTTCCTTCCCATTTTCTCAGATTCACTCTCCTTTGTTTTCTTATGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

199

Amino Acids

21.8

Weight (kDa)

7.69

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
AccII	CGCG	1 cut(s)	350
AciI	CCGC	4 cut(s)	84, 187, 203, 404
AclWI	GGATC	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	392, 398
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	6 cut(s)	78, 167, 256, 289, 325, 443
AluI	AGCT	6 cut(s)	78, 167, 256, 289, 325, 443
AlwI	GGATC	1 cut(s)	114
AlwNI	CAGNNNCTG	1 cut(s)	268
AoxI	GGCC	2 cut(s)	373, 419
ApeKI	GCWGC	4 cut(s)	75, 120, 368, 401
AspLEI	GCGC	3 cut(s)	120, 235, 267
AspS9I	GGNCC	2 cut(s)	17, 419
AsuHPI	GGTGA	3 cut(s)	208, 296, 335
AvaII	GGWCC	1 cut(s)	17
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbvI	GCAGC	4 cut(s)	87, 132, 355, 413
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	174, 314
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	6 cut(s)	76, 85, 121, 203, 369, 402
BlsI	GCNGC	6 cut(s)	77, 86, 122, 204, 370, 403
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	17, 419
BmiI	GGNNCC	2 cut(s)	222, 420
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	478
BpmI	CTGGAG	3 cut(s)	290, 347, 449
BsaAI	YACGTR	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	312, 576
BseRI	GAGGAG	3 cut(s)	227, 230, 233
BseXI	GCAGC	4 cut(s)	87, 132, 355, 413
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	375, 421
BsiSI	CCGG	2 cut(s)	372, 422
BsiWI	CGTACG	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	2 cut(s)	375, 421
Bsp143I	GATC	5 cut(s)	106, 340, 354, 408, 501
Bsp68I	TCGCGA	1 cut(s)	350
BspACI	CCGC	4 cut(s)	84, 187, 203, 404
BspANI	GGCC	2 cut(s)	375, 421
BspCNI	CTCAG	2 cut(s)	313, 575
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	222, 420
BspPI	GGATC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	371
BssMI	GATC	5 cut(s)	106, 340, 354, 408, 501
Bst2UI	CCWGG	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	296, 373
BstDEI	CTNAG	2 cut(s)	321, 562
BstFNI	CGCG	1 cut(s)	350
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	3 cut(s)	120, 235, 267
BstKTI	GATC	5 cut(s)	109, 343, 357, 411, 504
BstMBI	GATC	5 cut(s)	106, 340, 354, 408, 501
BstMWI	GCNNNNNNNGC	7 cut(s)	81, 84, 262, 295, 300, 331, 368
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	4 cut(s)	87, 132, 355, 413
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	375, 421
BtgZI	GCGATG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	318
BtuMI	TCGCGA	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	296, 373
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	3 cut(s)	120, 235, 267
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	17, 419
Csp6I	GTAC	2 cut(s)	391, 397
CviAII	CATG	1 cut(s)	44
CviQI	GTAC	2 cut(s)	391, 397
DdeI	CTNAG	2 cut(s)	321, 562
DpnI	GATC	5 cut(s)	108, 342, 356, 410, 503
DpnII	GATC	5 cut(s)	106, 340, 354, 408, 501
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	47
FaiI	YATR	6 cut(s)	45, 59, 63, 114, 207, 589
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	6 cut(s)	76, 85, 121, 203, 369, 402
Fsp4HI	GCNGC	6 cut(s)	76, 85, 121, 203, 369, 402
FspBI	CTAG	2 cut(s)	174, 314
GlaI	GCGC	3 cut(s)	119, 234, 266
GluI	GCNGC	6 cut(s)	76, 85, 121, 203, 369, 402
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	3 cut(s)	290, 347, 449
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	2 cut(s)	375, 421
HapII	CCGG	2 cut(s)	372, 422
HhaI	GCGC	3 cut(s)	120, 235, 267
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	3 cut(s)	118, 233, 265
HinP1I	GCGC	3 cut(s)	118, 233, 265
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	7 cut(s)	67, 259, 329, 480, 493, 521, 566
HpaII	CCGG	2 cut(s)	372, 422
HphI	GGTGA	3 cut(s)	208, 296, 335
Hpy166II	GTNNAC	2 cut(s)	393, 534
Hpy188I	TCNGA	3 cut(s)	157, 387, 565
Hpy188III	TCNNGA	3 cut(s)	140, 349, 594
Hpy8I	GTNNAC	2 cut(s)	393, 534
Hpy99I	CGWCG	2 cut(s)	229, 241
HpyAV	CCTTC	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	4, 298, 381, 488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	81, 84, 262, 295, 300, 331, 368
HpyF3I	CTNAG	2 cut(s)	321, 562
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	3 cut(s)	118, 233, 265
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	106, 340, 354, 408, 501
LmnI	GCTCC	2 cut(s)	164, 220
Lsp1109I	GCAGC	4 cut(s)	87, 132, 355, 413
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	174, 314
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	2 cut(s)	316, 518
MalI	GATC	5 cut(s)	108, 342, 356, 410, 503
MboI	GATC	5 cut(s)	106, 340, 354, 408, 501
MboII	GAAGA	4 cut(s)	128, 364, 439, 442
MflI	RGATCY	1 cut(s)	106
MlyI	GAGTC	3 cut(s)	338, 489, 515
MroNI	GCCGGC	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	372, 422
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	7 cut(s)	81, 84, 262, 295, 300, 331, 368
NaeI	GCCGGC	1 cut(s)	373
NdeII	GATC	5 cut(s)	106, 340, 354, 408, 501
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	222, 420
NmuCI	GTSAC	2 cut(s)	316, 518
NruI	TCGCGA	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	4 cut(s)	67, 259, 493, 566
Pfl23II	CGTACG	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	6 cut(s)	77, 86, 122, 204, 370, 403
PleI	GAGTC	3 cut(s)	337, 488, 515
PpsI	GAGTC	3 cut(s)	337, 488, 515
Ppu21I	YACGTR	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	267
PspLI	CGTACG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	222, 420
PspPI	GGNCC	2 cut(s)	17, 419
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	314
RruI	TCGCGA	1 cut(s)	350
RsaI	GTAC	2 cut(s)	392, 398
RsaNI	GTAC	2 cut(s)	391, 397
RseI	CAYNNNNRTG	1 cut(s)	48
SatI	GCNGC	6 cut(s)	76, 85, 121, 203, 369, 402
Sau3AI	GATC	5 cut(s)	106, 340, 354, 408, 501
Sau96I	GGNCC	2 cut(s)	17, 419
SchI	GAGTC	3 cut(s)	338, 489, 515
ScrFI	CCNGG	1 cut(s)	269
SfaNI	GCATC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	48
SsiI	CCGC	4 cut(s)	84, 187, 203, 404
SspMI	CTAG	2 cut(s)	174, 314
StyD4I	CCNGG	1 cut(s)	267
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	4 cut(s)	141, 339, 450, 504
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	87, 205
TfiI	GAWTC	4 cut(s)	67, 259, 493, 566
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	316, 518
TseI	GCWGC	4 cut(s)	75, 120, 368, 401
Tsp45I	GTSAC	2 cut(s)	316, 518
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	325
Tth111I	GACNNNGTC	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	17
XspI	CTAG	2 cut(s)	174, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.