Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Reverse (-)

27082767 .. 27084620

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1292500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATGTTGGAGATGTGTAGGAGGCCGTTGGAGAAGTGTTTTGGTGGCGGAGACGGCGGCGATGGCCTGCTTTGGCACATGGACCTCAAGCCACACTCTTCTGGGAACTATTCGATTGCAGTGGTTCAAGCAAATTCGGCGCTGGAAGATCAGGGACAGGTGTTCTCATCTCCTCTCGCAACGTACGTTGGAGTCTATGACGGCCACGGCGGTCCTGAAGCTTCCCGCTTCATTACCAACCGACTCTTCCGCTTCCTTCACAAGTTTGCAACTGAACAAGGTGGACTATCGGAGGATGTGATAAGGCAGGCATTTGATGCAACAGAGGAGGAGTTCTTGGAGTTGGTTAAGCGATCATGGATGGTGCGGCCGCAGATTGCTTCAGTAGGATCGTGTTGCCTGGTTGGTGCAATTGCGGATGGTCTTTTATATGTGGCTAATCTCGGAGATTCGAGGGCAGTTCTTGGCAGGAGATCATCGGATGGGCAGGCGGTGGTGGCAGAGCGGTTGTCTACGGATCACAATGTTGCAGTGGAGGAAGTGAGGAAGGAGGTTAAGGATCTTCACCCTGATGATGCGCACATTGTGGTGTTTACGCGTGGAGTTTGGCGAATTAAGGGCATTATTCAGGTGCATTGCATGAACCGTATCTTACAGCTTTTCTTTCTTGACGAGTACACGAGTACAAAGGAAAAGTCCACTGTTTTTCTGCGGATATGGTATTCTCTCATTGTTTGTCCTGATCCATCTACTTTCACAGGTTTTCCTCTTTACTCTTTAGCCGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

264

Amino Acids

29.24

Weight (kDa)

5.76

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	60 - 179	9.5e-15	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	579
AccBSI	CCGCTC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	512
AccII	CGCG	1 cut(s)	598
AclWI	GGATC	4 cut(s)	397, 525, 567, 737
AcoI	YGGCCR	2 cut(s)	202, 368
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	237, 366
AdeI	CACNNNGTG	1 cut(s)	586
AfaI	GTAC	3 cut(s)	185, 677, 685
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	221, 658
AluI	AGCT	2 cut(s)	221, 658
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	4 cut(s)	397, 525, 567, 737
AoxI	GGCC	4 cut(s)	23, 64, 202, 368
ApoI	RAATTY	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AspLEI	GCGC	2 cut(s)	142, 580
AspS9I	GGNCC	2 cut(s)	82, 212
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	2 cut(s)	82, 212
BauI	CACGAG	1 cut(s)	679
BccI	CCATC	5 cut(s)	56, 355, 413, 476, 754
BceAI	ACGGC	4 cut(s)	10, 70, 217, 223
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	790
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	4 cut(s)	58, 368, 371, 783
BlsI	GCNGC	4 cut(s)	59, 369, 372, 784
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	2 cut(s)	82, 212
BmgT120I	GGNCC	2 cut(s)	82, 212
BmrFI	CCNGG	1 cut(s)	401
BmsI	GCATC	2 cut(s)	307, 565
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	4 cut(s)	301, 366, 424, 487
BseMI	GCAATG	1 cut(s)	634
BseRI	GAGGAG	3 cut(s)	162, 341, 344
BseX3I	CGGCCG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	598
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	4 cut(s)	25, 66, 204, 370
BsiEI	CGRYCG	1 cut(s)	371
BsiWI	CGTACG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	4 cut(s)	25, 66, 204, 370
Bsp143I	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
BspANI	GGCC	4 cut(s)	25, 66, 204, 370
BspFNI	CGCG	1 cut(s)	598
BspPI	GGATC	4 cut(s)	397, 525, 567, 737
BsrBI	CCGCTC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
BssSI	CACGAG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	647, 703
Bst6I	CTCTTC	2 cut(s)	103, 251
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	3 cut(s)	68, 309, 489
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	4 cut(s)	301, 366, 424, 487
BstFNI	CGCG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	142, 580
BstKTI	GATC	7 cut(s)	151, 356, 392, 476, 520, 562, 745
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
BstMCI	CGRYCG	1 cut(s)	371
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 63, 137, 317, 497
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	598
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BstZI	CGGCCG	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	25, 66, 204, 370
BtgI	CCRYGG	1 cut(s)	205
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	301, 366, 424, 487
BtsI	GCAGTG	2 cut(s)	126, 537
BtsIMutI	CAGTG	3 cut(s)	126, 537, 699
Cac8I	GCNNGC	3 cut(s)	68, 309, 489
CciNI	GCGGCCGC	1 cut(s)	368
CfoI	GCGC	2 cut(s)	142, 580
Cfr13I	GGNCC	2 cut(s)	82, 212
Csp6I	GTAC	3 cut(s)	184, 676, 684
CviAII	CATG	3 cut(s)	79, 357, 640
CviJI	RGCY	9 cut(s)	25, 66, 91, 204, 221, 370, 437, 658, 782
CviKI_1	RGCY	9 cut(s)	25, 66, 91, 204, 221, 370, 437, 658, 782
CviQI	GTAC	3 cut(s)	184, 676, 684
DpnI	GATC	7 cut(s)	150, 355, 391, 475, 519, 561, 744
DpnII	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
DraIII	CACNNNGTG	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	202, 368
EagI	CGGCCG	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	103, 251
EarI	CTCTTC	2 cut(s)	103, 251
EciI	GGCGGA	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	82, 212
Eco52I	CGGCCG	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	237, 366
EcoRII	CCWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	82, 360, 643
FaiI	YATR	7 cut(s)	80, 198, 358, 430, 432, 641, 718
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	78, 356, 639
FauI	CCCGC	1 cut(s)	233
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	4 cut(s)	58, 368, 371, 783
FokI	GGATG	4 cut(s)	308, 373, 431, 494
Fsp4HI	GCNGC	4 cut(s)	58, 368, 371, 783
FspAI	RTGCGCAY	1 cut(s)	579
FspBI	CTAG	1 cut(s)	790
FspI	TGCGCA	1 cut(s)	579
GlaI	GCGC	2 cut(s)	141, 579
GluI	GCNGC	4 cut(s)	58, 368, 371, 783
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	4 cut(s)	25, 66, 204, 370
HhaI	GCGC	2 cut(s)	142, 580
Hin1II	CATG	3 cut(s)	82, 360, 643
Hin6I	GCGC	2 cut(s)	140, 578
HinP1I	GCGC	2 cut(s)	140, 578
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	3 cut(s)	192, 243, 449
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	5 cut(s)	284, 513, 594, 678, 699
Hpy188I	TCNGA	3 cut(s)	292, 446, 481
Hpy188III	TCNNGA	3 cut(s)	215, 668, 740
Hpy8I	GTNNAC	5 cut(s)	284, 513, 594, 678, 699
HpyAV	CCTTC	2 cut(s)	266, 541
HpyCH4III	ACNGT	2 cut(s)	647, 703
HpyCH4IV	ACGT	2 cut(s)	182, 186
HpyCH4V	TGCA	7 cut(s)	119, 269, 320, 410, 530, 634, 639
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 63, 137, 317, 497
HpySE526I	ACGT	2 cut(s)	182, 186
Hsp92II	CATG	3 cut(s)	82, 360, 643
HspAI	GCGC	2 cut(s)	140, 578
Kzo9I	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
LweI	GCATC	2 cut(s)	307, 565
MaeI	CTAG	1 cut(s)	790
MaeII	ACGT	2 cut(s)	182, 186
MalI	GATC	7 cut(s)	150, 355, 391, 475, 519, 561, 744
MbiI	CCGCTC	1 cut(s)	505
MboI	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
MboII	GAAGA	4 cut(s)	90, 158, 238, 554
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	3 cut(s)	133, 411, 612
MluI	ACGCGT	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	201, 237
MmeI	TCCRAC	2 cut(s)	9, 169
MseI	TTAA	3 cut(s)	348, 555, 615
MslI	CAYNNNNRTG	2 cut(s)	570, 587
MspR9I	CCNGG	1 cut(s)	401
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	5 cut(s)	54, 63, 137, 317, 497
NdeII	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
NlaIII	CATG	3 cut(s)	82, 360, 643
NotI	GCGGCCGC	1 cut(s)	368
NsbI	TGCGCA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	449
Pfl23II	CGTACG	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	59, 369, 372, 784
PleI	GAGTC	2 cut(s)	200, 237
PpsI	GAGTC	2 cut(s)	200, 237
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspLI	CGTACG	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	82, 212
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	3 cut(s)	185, 677, 685
RsaNI	GTAC	3 cut(s)	184, 676, 684
RseI	CAYNNNNRTG	2 cut(s)	570, 587
SaqAI	TTAA	3 cut(s)	348, 555, 615
SatI	GCNGC	4 cut(s)	58, 368, 371, 783
Sau3AI	GATC	7 cut(s)	148, 353, 389, 473, 517, 559, 742
Sau96I	GGNCC	2 cut(s)	82, 212
SchI	GAGTC	2 cut(s)	201, 237
ScrFI	CCNGG	1 cut(s)	401
SfaNI	GCATC	2 cut(s)	307, 565
SinI	GGWCC	2 cut(s)	82, 212
SmiMI	CAYNNNNRTG	2 cut(s)	570, 587
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	133, 411, 612
SspMI	CTAG	1 cut(s)	790
StyD4I	CCNGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	647, 703
TaiI	ACGT	2 cut(s)	185, 189
TaqI	TCGA	2 cut(s)	113, 452
TasI	AATT	3 cut(s)	133, 411, 612
TatI	WGTACW	2 cut(s)	675, 683
TauI	GCSGC	4 cut(s)	60, 370, 373, 785
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	3 cut(s)	348, 555, 615
Tru9I	TTAA	3 cut(s)	348, 555, 615
TscAI	CASTG	3 cut(s)	126, 537, 706
TspDTI	ATGAA	2 cut(s)	220, 656
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	126, 537, 706
VpaK11BI	GGWCC	2 cut(s)	82, 212
XapI	RAATTY	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.