Rroxscaffold_5G00349630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001678
Physical Location & Seq
Reverse (-)
22684058 .. 22686457
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349630.1

Sequence Viewer

Length: 606 bp
ATGGGGTGGGTCGGCCGAGGGACGCCGAAAACACGTTTTCCGACCGGCCGGGCCGGCGGAGACCGAGGGGCCTTCGATCCACACTTCGGGCAGCGACGGTGCAAGGCAACACCACCGCCGACCGGGCGGCTCCGTCCGGGTGCGGGGAGGGCCGGTCGTGGCCGGAGGTGGCCGGAGCTCGTCGAGCCCTCGCTACTACCGCCGGCAGCCATCGGCGGTTCTCGTCCGCGAAACCTCCATATCAAAAGCAGCAGATGCAAAGAAAGAGAGGACCTTTTTCTCGCTTGTGCTTCCGGGCATGATGATGTTAGTGCGTACGAGATTCGCAGCGACTTTGGCGGTAGAGATGGTGTCATTTTGGATCCGCATAAGCGCAGCCCTCTTGGACCTCTTCTCGACAACAAAGCTTTCCGAGAGCGGAGCCGGGCTAGTGCCTCCGGGAGGTGGGGGGTGAAGTCGCATAAGGAGGAGGAGGAGCCGATGACCGGGTCGTCGCTTTTGTCCTACAAGCCGATTCGGTGCGTGGAGAGGCTCGGAGGGGAGCTCTACTTGCGAGCCTCGCCGACCAAGTCACCGAGCCGGAGTCGCGATTCGATCGCCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

21.98

Weight (kDa)

10.55

Isoelectric Point (pI)

70.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 2 cut(s) 229, 588
AclWI GGATC 3 cut(s) 71, 356, 369
AcoI YGGCCR 4 cut(s) 13, 46, 160, 170
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 6 cut(s) 86, 122, 143, 441, 444, 485
AflIII ACRYGT 1 cut(s) 32
AluBI AGCT 3 cut(s) 178, 407, 544
AluI AGCT 3 cut(s) 178, 407, 544
Alw21I GWGCWC 2 cut(s) 180, 546
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 3 cut(s) 71, 356, 369
AoxI GGCC 7 cut(s) 13, 46, 51, 69, 150, 160, 170
ApeKI GCWGC 5 cut(s) 91, 206, 249, 327, 375
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 5 cut(s) 51, 69, 150, 271, 386
AsuC2I CCSGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
AsuHPI GGTGA 2 cut(s) 463, 564
AvaII GGWCC 2 cut(s) 271, 386
BamHI GGATCC 1 cut(s) 361
BanII GRGCYC 3 cut(s) 180, 189, 546
BauI CACGAG 1 cut(s) 601
Bbv12I GWGCWC 2 cut(s) 180, 546
BbvI GCAGC 5 cut(s) 103, 218, 261, 339, 387
BccI CCATC 2 cut(s) 218, 341
BcnI CCSGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 1 cut(s) 429
BglI GCCNNNNNGGC 2 cut(s) 54, 124
BisI GCNGC 6 cut(s) 92, 128, 207, 250, 328, 376
BlsI GCNGC 6 cut(s) 93, 129, 208, 251, 329, 377
Bme1390I CCNGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
Bme18I GGWCC 2 cut(s) 271, 386
BmgT120I GGNCC 5 cut(s) 51, 69, 150, 271, 386
BmiI GGNNCC 5 cut(s) 70, 131, 363, 422, 477
BmrFI CCNGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
BmsI GCATC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpuMI CCSGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 16, 64
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 122, 143, 441, 444, 485
Bse118I RCCGGY 4 cut(s) 44, 53, 152, 202
BseDI CCNNGG 2 cut(s) 16, 64
BseLI CCNNNNNNNGG 6 cut(s) 86, 122, 143, 441, 444, 485
BseRI GAGGAG 3 cut(s) 482, 485, 488
BseX3I CGGCCG 2 cut(s) 13, 46
BseXI GCAGC 5 cut(s) 103, 218, 261, 339, 387
Bsh1236I CGCG 2 cut(s) 229, 588
Bsh1285I CGRYCG 6 cut(s) 16, 45, 49, 123, 157, 597
BshFI GGCC 7 cut(s) 15, 48, 53, 71, 152, 162, 172
BsiEI CGRYCG 6 cut(s) 16, 45, 49, 123, 157, 597
BsiHKAI GWGCWC 2 cut(s) 180, 546
BsiWI CGTACG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 6 cut(s) 86, 122, 143, 441, 444, 485
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 7 cut(s) 15, 48, 53, 71, 152, 162, 172
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 3 cut(s) 180, 189, 546
Bsp143I GATC 3 cut(s) 76, 361, 594
Bsp68I TCGCGA 1 cut(s) 588
BspANI GGCC 7 cut(s) 15, 48, 53, 71, 152, 162, 172
BspFNI CGCG 2 cut(s) 229, 588
BspLI GGNNCC 5 cut(s) 70, 131, 363, 422, 477
BspPI GGATC 3 cut(s) 71, 356, 369
BspTNI GGTCTC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 4 cut(s) 44, 53, 152, 202
BssAI RCCGGY 4 cut(s) 44, 53, 152, 202
BssECI CCNNGG 2 cut(s) 16, 64
BssMI GATC 3 cut(s) 76, 361, 594
BssNI GRCGYC 1 cut(s) 23
BssSI CACGAG 1 cut(s) 601
Bst2BI CACGAG 1 cut(s) 601
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 55, 204, 555
BstENI CCTNNNNNAGG 1 cut(s) 439
BstFNI CGCG 2 cut(s) 229, 588
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 3 cut(s) 79, 364, 597
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 3 cut(s) 76, 361, 594
BstMCI CGRYCG 6 cut(s) 16, 45, 49, 123, 157, 597
BstSCI CCNGG 7 cut(s) 48, 122, 136, 293, 423, 437, 485
BstUI CGCG 2 cut(s) 229, 588
BstV1I GCAGC 5 cut(s) 103, 218, 261, 339, 387
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZI CGGCCG 2 cut(s) 13, 46
BsuRI GGCC 7 cut(s) 15, 48, 53, 71, 152, 162, 172
BtuMI TCGCGA 1 cut(s) 588
Cac8I GCNNGC 3 cut(s) 55, 204, 555
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 4 cut(s) 44, 53, 152, 202
Cfr13I GGNCC 5 cut(s) 51, 69, 150, 271, 386
CseI GACGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 299
CviQI GTAC 1 cut(s) 316
DpnI GATC 3 cut(s) 78, 363, 596
DpnII GATC 3 cut(s) 76, 361, 594
DrdI GACNNNNNNGTC 1 cut(s) 490
DseDI GACNNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 4 cut(s) 13, 46, 160, 170
EagI CGGCCG 2 cut(s) 13, 46
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 72
Ecl136II GAGCTC 2 cut(s) 178, 544
EclXI CGGCCG 2 cut(s) 13, 46
Eco24I GRGCYC 3 cut(s) 180, 189, 546
Eco31I GGTCTC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 271, 386
Eco52I CGGCCG 2 cut(s) 13, 46
Eco53kI GAGCTC 2 cut(s) 178, 544
EcoICRI GAGCTC 2 cut(s) 178, 544
EcoNI CCTNNNNNAGG 1 cut(s) 439
EcoO109I RGGNCCY 2 cut(s) 69, 271
EcoT38I GRGCYC 3 cut(s) 180, 189, 546
FaeI CATG 1 cut(s) 302
FaiI YATR 4 cut(s) 240, 300, 369, 462
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 6 cut(s) 92, 128, 207, 250, 328, 376
FriOI GRGCYC 3 cut(s) 180, 189, 546
Fsp4HI GCNGC 6 cut(s) 92, 128, 207, 250, 328, 376
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 374
GluI GCNGC 6 cut(s) 92, 128, 207, 250, 328, 376
HaeIII GGCC 7 cut(s) 15, 48, 53, 71, 152, 162, 172
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 375
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 302
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 405
HinfI GANTC 4 cut(s) 322, 514, 583, 590
HphI GGTGA 2 cut(s) 463, 564
Hpy188I TCNGA 3 cut(s) 42, 413, 536
Hpy188III TCNNGA 3 cut(s) 395, 587, 603
Hpy99I CGWCG 3 cut(s) 99, 185, 496
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 102, 258
HpySE526I ACGT 1 cut(s) 34
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 302
HspAI GCGC 1 cut(s) 373
KroI GCCGGC 2 cut(s) 53, 202
KroNI GCCGGC 2 cut(s) 55, 204
Kzo9I GATC 3 cut(s) 76, 361, 594
LmnI GCTCC 5 cut(s) 135, 175, 420, 475, 541
Lsp1109I GCAGC 5 cut(s) 103, 218, 261, 339, 387
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 570
MalI GATC 3 cut(s) 78, 363, 596
MbiI CCGCTC 1 cut(s) 418
MboI GATC 3 cut(s) 76, 361, 594
MboII GAAGA 1 cut(s) 383
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 3 cut(s) 180, 189, 546
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 1 cut(s) 65
MroNI GCCGGC 2 cut(s) 53, 202
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
MvnI CGCG 2 cut(s) 229, 588
NaeI GCCGGC 2 cut(s) 55, 204
NciI CCSGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
NdeII GATC 3 cut(s) 76, 361, 594
NgoMIV GCCGGC 2 cut(s) 53, 202
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 5 cut(s) 70, 131, 363, 422, 477
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 570
NruI TCGCGA 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PdiI GCCGGC 2 cut(s) 55, 204
PfeI GAWTC 3 cut(s) 322, 514, 590
Pfl23II CGTACG 1 cut(s) 315
PflFI GACNNNGTC 2 cut(s) 487, 568
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 6 cut(s) 93, 129, 208, 251, 329, 377
Ple19I CGATCG 1 cut(s) 597
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
PpuMI RGGWCCY 1 cut(s) 271
Psp124BI GAGCTC 2 cut(s) 180, 546
Psp5II RGGWCCY 1 cut(s) 271
PspLI CGTACG 1 cut(s) 315
PspN4I GGNNCC 5 cut(s) 70, 131, 363, 422, 477
PspPI GGNCC 5 cut(s) 51, 69, 150, 271, 386
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 2 cut(s) 487, 568
PvuI CGATCG 1 cut(s) 597
RruI TCGCGA 1 cut(s) 588
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 2 cut(s) 180, 546
SatI GCNGC 6 cut(s) 92, 128, 207, 250, 328, 376
Sau3AI GATC 3 cut(s) 76, 361, 594
Sau96I GGNCC 5 cut(s) 51, 69, 150, 271, 386
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 7 cut(s) 50, 124, 138, 295, 425, 439, 487
SduI GDGCHC 3 cut(s) 180, 189, 546
SetI ASST 9 cut(s) 37, 170, 180, 237, 276, 391, 409, 446, 546
SfaNI GCATC 1 cut(s) 245
SinI GGWCC 2 cut(s) 271, 386
SmiMI CAYNNNNRTG 1 cut(s) 303
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 2 cut(s) 180, 546
StyD4I CCNGG 7 cut(s) 48, 122, 136, 293, 423, 437, 485
TaaI ACNGT 1 cut(s) 99
TaiI ACGT 1 cut(s) 37
TaqI TCGA 4 cut(s) 75, 183, 396, 593
TaqII GACCGA 1 cut(s) 78
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 3 cut(s) 322, 514, 590
TseFI GTSAC 1 cut(s) 570
TseI GCWGC 5 cut(s) 91, 206, 249, 327, 375
Tsp45I GTSAC 1 cut(s) 570
TspGWI ACGGA 1 cut(s) 122
Tth111I GACNNNGTC 2 cut(s) 487, 568
VpaK11BI GGWCC 2 cut(s) 271, 386
XagI CCTNNNNNAGG 1 cut(s) 439
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.