Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Reverse (-)

7973340 .. 7975659

Gene Structure 2320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0100900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGGAGGGGAAAAGTGGAGCTGAAGAGAATAGAGAGTCCGATCAGCAGGCAGGTGACCTTCTCAAAACGCCGTACCGGCATCCTAAAGAAGGCCTTTGAGCTTTCCGTCCTCTGCGATGCTGAAGTTGCCCTCATCGTTTTCTCTCCCTCCGGCAAGCTTTATCAATATGCAAGCCATGACATAAATAGAACGATTGCGATGTATAGAAGTGAAGTAGGACTCCCTCAATCAAGTAACCCTGCATGCTCTACAAGGATTGGAACCATGGAGTTATGGAGGAATGAAACTGAAGAGTTAAGAAGGTCAATACAGAAAATGGAAATGAGGCTCAAGAACTTAGCTGGAGCAGAGCTATCAATGCTGGGCATGCAAGAGTTGAAACAGCTAGAGAGACAGTTAAAAACTGGGGTTCAACGCATCCGCTCTGAAATGACACGGATCACTTCGGAGAATATCCGCTTGCTGAAAAGGAAGCATAAAGCACAGCAAGAGGAAAATAGGCGTCTGCAGAAAAGAGTGAAGTTGCACGAGCTTGATCAATATGGTAATGCAAGCAGCTCGATAACATTGGGAGCAAGTGCACGCAATGTGATTATTAATGCATTTCAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

205

Amino Acids

23.51

Weight (kDa)

10.3

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.5e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	90 - 174	3e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	2 cut(s)	424, 460
AclWI	GGATC	1 cut(s)	449
AcuI	CTGAAG	3 cut(s)	44, 144, 312
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	382, 416
AluBI	AGCT	8 cut(s)	22, 103, 160, 344, 355, 388, 535, 561
AluI	AGCT	8 cut(s)	22, 103, 160, 344, 355, 388, 535, 561
Alw21I	GWGCWC	1 cut(s)	586
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	93
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	1 cut(s)	558
AseI	ATTAAT	1 cut(s)	600
AsuHPI	GGTGA	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	586
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	570
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	389, 616
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	90, 109, 429
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	81, 420
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	595
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	570
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	78, 153
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	586
Bsp143I	GATC	3 cut(s)	42, 441, 538
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	2 cut(s)	424, 460
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	595
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	3 cut(s)	42, 441, 538
BssNI	GRCGYC	1 cut(s)	505
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	2 cut(s)	20, 288
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 371, 464, 556, 586
BstDEI	CTNAG	1 cut(s)	340
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	2 cut(s)	81, 420
BstKTI	GATC	3 cut(s)	45, 444, 541
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	3 cut(s)	42, 441, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
BstNSI	RCATGY	2 cut(s)	249, 373
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	509
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	2 cut(s)	132, 215
BtsCI	GGATG	2 cut(s)	81, 420
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	8 cut(s)	50, 158, 175, 247, 371, 464, 556, 586
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	4 cut(s)	179, 246, 268, 370
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	340
DpnI	GATC	3 cut(s)	44, 443, 540
DpnII	GATC	3 cut(s)	42, 441, 538
Eam1104I	CTCTTC	2 cut(s)	20, 288
EarI	CTCTTC	2 cut(s)	20, 288
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	44, 144, 312
Eco91I	GGTNACC	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	182, 249, 271, 373
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	4 cut(s)	178, 245, 267, 369
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	559
FokI	GGATG	2 cut(s)	68, 407
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	2 cut(s)	389, 616
GluI	GCNGC	1 cut(s)	559
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	78, 153
HgaI	GACGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	182, 249, 271, 373
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	2 cut(s)	37, 222
HpaII	CCGG	2 cut(s)	78, 153
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	4 cut(s)	42, 430, 451, 612
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	3 cut(s)	70, 85, 297
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	8 cut(s)	173, 245, 373, 511, 529, 554, 584, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
HpyF3I	CTNAG	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	182, 249, 271, 373
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	42, 441, 538
LmnI	GCTCC	3 cut(s)	19, 347, 575
LpnPI	CCDG	8 cut(s)	34, 38, 91, 166, 255, 330, 350, 393
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	3 cut(s)	90, 109, 429
MaeI	CTAG	2 cut(s)	389, 616
MaeIII	GTNAC	2 cut(s)	55, 236
MalI	GATC	3 cut(s)	44, 443, 540
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	3 cut(s)	42, 441, 538
MboII	GAAGA	2 cut(s)	37, 305
MhlI	GDGCHC	1 cut(s)	586
MlyI	GAGTC	2 cut(s)	46, 216
MnlI	CCTC	7 cut(s)	122, 143, 160, 237, 273, 321, 487
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	3 cut(s)	299, 401, 600
MspI	CCGG	2 cut(s)	78, 153
MwoI	GCNNNNNNNGC	4 cut(s)	78, 128, 361, 370
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	42, 441, 538
NlaIII	CATG	4 cut(s)	182, 249, 271, 373
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	2 cut(s)	249, 373
PaeI	GCATGC	2 cut(s)	249, 373
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	560
PleI	GAGTC	2 cut(s)	45, 216
PpsI	GAGTC	2 cut(s)	45, 216
PshBI	ATTAAT	1 cut(s)	600
PspEI	GGTNACC	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	513
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	299, 401, 600
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	3 cut(s)	42, 441, 538
SchI	GAGTC	2 cut(s)	46, 216
SduI	GDGCHC	1 cut(s)	586
SfaNI	GCATC	3 cut(s)	90, 109, 429
SfcI	CTRYAG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SphI	GCATGC	2 cut(s)	249, 373
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	2 cut(s)	424, 460
SspMI	CTAG	2 cut(s)	389, 616
StuI	AGGCCT	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	563
Tru1I	TTAA	3 cut(s)	299, 401, 600
Tru9I	TTAA	3 cut(s)	299, 401, 600
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	2 cut(s)	97, 454
VneI	GTGCAC	1 cut(s)	582
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	89
XceI	RCATGY	2 cut(s)	249, 373
XspI	CTAG	2 cut(s)	389, 616
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.