Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001678

Physical Location & Seq

Genomic Coordinates Forward (+)

2863241 .. 2865531

Gene Structure 2291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0036100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAACACCCCTTTTCATGACCATGAGAAGAAGCAGAAGAAGAGTTTCATGTCCTCGTACAAACCCAGCCCCGGACGTCACCAAAAGCCGGACTCTAAGCCTGACATGGTGGATAAATACCCGGTTTTACGTAGCTTGTTCAGTTTGTCCAGGAAGTTGAAAACACGTCAAGAAGTTCTAGATCAATTTGAGCATGCTCAGAGTCAAAGAGAAGAACCAGATAAGCAAGTTGGAGTGGTGGTGGAGTCAGCAAGAAAGTCGGTGTCTCATGTCGAAAGCAACTTGGTATCAGTAGCTTCGTTTCTTCAAGTGAAGGTCTTGGTCTCAGACATGCCTGGCTTCATGCAAGTCCATGCCTTCCGCAGCGCTAGAAGAACCTACGACAGTTTGGAGAAGTTTAGCCCAAAACACATGGCTTACAACCTCAAAAAGGAGTTTGATAAAATGTATGGACCGGCATGGCATTGCATCGTGGGCTCAGGTTTCGGGTCATTCGTGACCCATTCGACTGGTTGTTTCCTGTATTTCTCAATGGAGAAGCTATGCATTTTGTTGTTCAGAACTAAAATCCAGAAAGCTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

195

Amino Acids

22.48

Weight (kDa)

9.59

Isoelectric Point (pI)

45.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	104 - 188	3.1e-28	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001678)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33920 AT4G33920 AT4G33920
fragaria_vesca	FvH4_1g17120 FvH4_1g17120 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560 FvH4_2g04560
malus_domestica	MD02G1181600.v1.1 MD05G1095000.v1.1 MD07G1193800.v1.1 MD09G1197700.v1.1 MD10G1102000.v1.1 MD15G1292500.v1.1
prunus_persica	Prupe.6G224900_v2.0.a1 Prupe.8G139700_v2.0.a1
pyrus_communis	pycom02g14740 pycom05g09390 pycom10g08770 pycom15g25550
rosa_chinensis	RchiOBHm_Chr2g0107291 RchiOBHm_Chr6g0254141
rosa_laevigata	RLG00000003413 RLG00000014940 RLG00000017568
rosa_multiflora	Rmu_co8069786.1_g000001 Rmu_sc0000010.1_g000028 Rmu_sc0003711.1_g000001 Rmu_sc0006416.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136460 Rroxscaffold_5G00349630 Rroxscaffold_7G00211130
rosa_rugosa	Rorug02G0036100 Rorug02G0141400 Rorug02G0141500 Rorug02G0381600 Rorug04G0161000 Rorug05G0094200 Rorug05G0550000 Rorug07G0100900
rosa_samantha	Rh2CG197700 Rh6AG066500 Rh6BG059600 Rh6CG059300 Rh6CG524200 Rh6DG056200
rosa_wichuraiana	Rw2G015230 Rw6G005840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	79
AciI	CCGC	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	160, 308
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	149, 334
AluBI	AGCT	4 cut(s)	135, 296, 541, 578
AluI	AGCT	4 cut(s)	135, 296, 541, 578
Alw26I	GTCTC	2 cut(s)	270, 328
Aor51HI	AGCGCT	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	452
AsuC2I	CCSGG	2 cut(s)	72, 122
AsuHPI	GGTGA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	151, 336
BcnI	CCSGG	2 cut(s)	72, 122
BcoDI	GTCTC	2 cut(s)	270, 328
BfaI	CTAG	2 cut(s)	179, 369
BfoI	RGCGCY	1 cut(s)	369
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	4 cut(s)	72, 122, 151, 336
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	4 cut(s)	72, 122, 151, 336
BmsI	GCATC	1 cut(s)	477
Bpu10I	CCTNAGC	2 cut(s)	478, 579
BpuMI	CCSGG	2 cut(s)	72, 122
BsaAI	YACGTR	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 88, 430
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	151, 336
BseDI	CCNNGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	4 cut(s)	212, 339, 492, 570
BseNI	ACTGG	1 cut(s)	514
BseXI	GCAGC	1 cut(s)	375
BseYI	CCCAGC	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	72, 89, 122, 455
BslI	CCNNNNNNNGG	3 cut(s)	71, 88, 430
BsmAI	GTCTC	2 cut(s)	270, 328
Bso31I	GGTCTC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	361
BspCNI	CTCAG	4 cut(s)	211, 338, 491, 571
BspHI	TCATGA	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	151, 336
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	5 cut(s)	96, 198, 325, 478, 579
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	368
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	270, 328
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	2 cut(s)	151, 336
BstNSI	RCATGY	2 cut(s)	197, 334
BstSCI	CCNGG	4 cut(s)	70, 120, 149, 334
BstSNI	TACGTA	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	509
BtrI	CACGTC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	195
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	58
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	5 cut(s)	96, 198, 325, 478, 579
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco105I	TACGTA	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	149, 334
EcoT22I	ATGCAT	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	479
Fnu4HI	GCNGC	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	2 cut(s)	179, 369
GlaI	GCGC	1 cut(s)	367
GluI	GCNGC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	369
HapII	CCGG	4 cut(s)	72, 89, 122, 455
HhaI	GCGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	366
HinP1I	GCGC	1 cut(s)	366
HinfI	GANTC	3 cut(s)	92, 202, 245
HpaII	CCGG	4 cut(s)	72, 89, 122, 455
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	201, 328, 560
Hpy188III	TCNNGA	5 cut(s)	17, 170, 179, 496, 571
HpyAV	CCTTC	2 cut(s)	307, 367
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	3 cut(s)	76, 130, 166
HpyCH4V	TGCA	3 cut(s)	346, 468, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	5 cut(s)	96, 198, 325, 478, 579
HpySE526I	ACGT	3 cut(s)	76, 130, 166
Hsp92I	GRCGYC	1 cut(s)	76
HspAI	GCGC	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	181
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	2 cut(s)	179, 369
MaeII	ACGT	3 cut(s)	76, 130, 166
MaeIII	GTNAC	2 cut(s)	77, 496
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	6 cut(s)	40, 49, 52, 224, 296, 384
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	3 cut(s)	86, 211, 254
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	64, 434, 574
Mph1103I	ATGCAT	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	21
MspI	CCGG	4 cut(s)	72, 89, 122, 455
MspR9I	CCNGG	4 cut(s)	72, 122, 151, 336
MvaI	CCWGG	2 cut(s)	151, 336
MwoI	GCNNNNNNNGC	1 cut(s)	474
NciI	CCSGG	2 cut(s)	72, 122
NdeII	GATC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	77, 496
NsiI	ATGCAT	1 cut(s)	548
NspI	RCATGY	2 cut(s)	197, 334
PaeI	GCATGC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	3 cut(s)	86, 210, 253
PpsI	GAGTC	3 cut(s)	86, 210, 253
Ppu21I	YACGTR	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	149, 334
PspFI	CCCAGC	1 cut(s)	65
PspGI	CCWGG	2 cut(s)	149, 334
PspPI	GGNCC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	21
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	3 cut(s)	86, 211, 254
ScrFI	CCNGG	4 cut(s)	72, 122, 151, 336
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	21
SnaBI	TACGTA	1 cut(s)	131
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	2 cut(s)	179, 369
StyD4I	CCNGG	4 cut(s)	70, 120, 149, 334
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	3 cut(s)	79, 133, 169
TaqI	TCGA	2 cut(s)	273, 506
TasI	AATT	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	77, 496
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	2 cut(s)	77, 496
TspDTI	ATGAA	4 cut(s)	5, 17, 37, 331
VpaK11BI	GGWCC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	2 cut(s)	197, 334
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	179, 369
ZraI	GACGTC	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.