AT3G51380

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016630
Physical Location & Seq
Reverse (-)
19074036 .. 19074815
780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51380.1

Sequence Viewer

Length: 312 bp
ATGGCCAACTCCAAACGTTTGTTTGGTGTTGTAAGAAGGAAACTTCTCCGACGATCTCAAAGCAGAATCACAATCATTCGCTCTTCAGCTCCAGAAACAACTCGAGAAGAGATTGCCGCCGTTAAAATCCAAGCCTTTTTCAGAGGGCACCTGGCAAGAAGAGCGTTTAAAGCATTGAAGAGTCTGGTGAAGTTACAGGCGGTGGCTAGAGGAGTGCTTGTGAGGAGACAAGCACGAATTGCTTTACATTGTATGCATGCTCTTGCTCGCTTGCAGGTTAGGGTTCGTGCTCGTCAGCTTCTCTCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

12.0

Isoelectric Point (pI)

76.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 39 - 57 9.7e-08 IQ calmodulin-binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51380
fragaria_vesca FvH4_1g10950
prunus_persica Prupe.7G176100_v2.0.a1
rosa_laevigata RLG00000016775
rosa_multiflora Rmu_co8446561.1_g000001 Rmu_sc0002559.1_g000002 Rmu_sc0009178.1_g000004
rosa_roxburghii Rroxscaffold_2G00144170
rosa_rugosa Rorug02G0071100
rosa_samantha Rh2AG118200 Rh2BG121400 Rh2CG122900 Rh2DG123100
rosa_wichuraiana Rw2G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 2 cut(s) 117, 200
AclI AACGTT 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 69
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 89, 298
AluI AGCT 2 cut(s) 89, 298
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 3
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 150
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
BseBI CCWGG 1 cut(s) 152
BseRI GAGGAG 2 cut(s) 225, 238
BseSI GKGCMC 1 cut(s) 150
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 2 cut(s) 150, 292
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 2 cut(s) 117, 200
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 265
BspQI GCTCTTC 2 cut(s) 88, 154
BspT107I GGYRCC 1 cut(s) 147
BssMI GATC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 152
Bst6I CTCTTC 4 cut(s) 88, 102, 154, 173
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 258, 268, 272
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 3 cut(s) 161, 170, 239
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 258, 268, 272
CviAII CATG 1 cut(s) 257
CviJI RGCY 5 cut(s) 5, 89, 134, 206, 298
CviKI_1 RGCY 5 cut(s) 5, 89, 134, 206, 298
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
DraI TTTAAA 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 88, 102, 154, 173
EarI CTCTTC 4 cut(s) 88, 102, 154, 173
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 258
FaeI CATG 1 cut(s) 260
FaiI YATR 2 cut(s) 254, 258
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 260
HinfI GANTC 2 cut(s) 66, 181
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 50, 143
Hpy188III TCNNGA 2 cut(s) 92, 104
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 256, 274
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 170, 239
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 1 cut(s) 53
LguI GCTCTTC 2 cut(s) 88, 154
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 105, 137, 164, 170, 182, 260
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 192
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 4 cut(s) 75, 119, 171, 190
MhlI GDGCHC 2 cut(s) 150, 292
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 3 cut(s) 137, 203, 216
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 258
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 123, 168, 310
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 161, 170, 239
NdeII GATC 1 cut(s) 53
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 260
PaeI GCATGC 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 102
PciSI GCTCTTC 2 cut(s) 88, 154
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp1406I AACGTT 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 149
SapI GCTCTTC 2 cut(s) 88, 154
SaqAI TTAA 3 cut(s) 123, 168, 310
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 53
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 150, 292
SetI ASST 5 cut(s) 19, 91, 153, 279, 300
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
SphI GCATGC 1 cut(s) 260
Sse9I AATT 1 cut(s) 237
SsiI CCGC 2 cut(s) 117, 200
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 150
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 237
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 123, 168, 310
Tru9I TTAA 3 cut(s) 123, 168, 310
XceI RCATGY 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 102
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.