FvH4_1g10950

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016630
Physical Location & Seq
Forward (+)
5960069 .. 5960769
701 bp
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UTR
Exon/CDS
Intron
FvH4_1g10950.t1

Sequence Viewer

Length: 426 bp
ATGGGAACTTCCAGCAACTGGTTTCGAAAAATCCGAAGAAAGTTTGTGAGATCCTCAGACAGAGATATCATTGTCGTCTATAACACCAGCCCACGCTTCCATGGAGAAGAAGCCGATTATGAAGTCCTCATTCACGACGACGCTTCGTCTACAATCTCTTCCATCATAACCATAGAGAAAACTTTAACCAAGGAAGACATTGCAGCCATCAAGATCCAAGCATTTTTCAGAGGCCAACTTGCAAGACGAGCATTTCGAGCACTCAAGAGCCTGGTGAAGCTGCAAGCACTGGTTCGAGGAGTGTGTGTGAGGAAACAGGCCCGAGTCGCTATGCAATGCATGCGTGCGCTTGTGCAGTTGCAGGTCAAGGTTCGTGCACGGCAGCTCCTCAACGGGTATAGTGATGCCAGATCCATCACAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

142

Amino Acids

16.07

Weight (kDa)

10.74

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IQ PF00612 68 - 86 5.8e-06 IQ calmodulin-binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51380
fragaria_vesca FvH4_1g10950
prunus_persica Prupe.7G176100_v2.0.a1
rosa_laevigata RLG00000016775
rosa_multiflora Rmu_co8446561.1_g000001 Rmu_sc0002559.1_g000002 Rmu_sc0009178.1_g000004
rosa_roxburghii Rroxscaffold_2G00144170
rosa_rugosa Rorug02G0071100
rosa_samantha Rh2AG118200 Rh2BG121400 Rh2CG122900 Rh2DG123100
rosa_wichuraiana Rw2G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 18
AccI GTMKAC 1 cut(s) 149
AclWI GGATC 3 cut(s) 45, 208, 405
AfiI CCNNNNNNNGG 1 cut(s) 18
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 3 cut(s) 280, 385, 422
AluI AGCT 3 cut(s) 280, 385, 422
Alw21I GWGCWC 2 cut(s) 262, 379
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 3 cut(s) 45, 208, 405
AlwNI CAGNNNCTG 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 2 cut(s) 232, 318
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 203, 280, 382
ArsI GACNNNNNNTTYG 2 cut(s) 237, 269
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 321
BaeGI GKGCMC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 262, 379
BbvI GCAGC 3 cut(s) 215, 267, 394
BccI CCATC 3 cut(s) 170, 215, 422
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 352
BisI GCNGC 3 cut(s) 204, 281, 383
BlsI GCNGC 3 cut(s) 205, 282, 384
Bme1390I CCNGG 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 319
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 100, 189
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 369, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 2 cut(s) 23, 294
Bse3DI GCAATG 2 cut(s) 198, 341
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 2 cut(s) 100, 189
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 2 cut(s) 198, 341
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 2 cut(s) 23, 294
BseRI GAGGAG 2 cut(s) 312, 377
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 3 cut(s) 215, 267, 394
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 2 cut(s) 234, 320
BsiHKAI GWGCWC 2 cut(s) 262, 379
BsiHKCI CYCGRG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 2 cut(s) 234, 320
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 262, 379
Bsp143I GATC 3 cut(s) 50, 213, 410
Bsp19I CCATGG 1 cut(s) 100
BspANI GGCC 2 cut(s) 234, 320
BspCNI CTCAG 1 cut(s) 68
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 3 cut(s) 45, 208, 405
BspT104I TTCGAA 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 198, 341
BsrI ACTGG 2 cut(s) 23, 294
BssECI CCNNGG 2 cut(s) 100, 189
BssMI GATC 3 cut(s) 50, 213, 410
BssT1I CCWWGG 2 cut(s) 100, 189
Bst2UI CCWGG 1 cut(s) 272
Bst6I CTCTTC 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 3 cut(s) 285, 341, 345
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 3 cut(s) 53, 216, 413
BstMBI GATC 3 cut(s) 50, 213, 410
BstMWI GCNNNNNNNGC 4 cut(s) 248, 257, 326, 340
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 215, 267, 394
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 3 cut(s) 50, 213, 410
BstYI RGATCY 3 cut(s) 50, 213, 410
BsuRI GGCC 2 cut(s) 234, 320
BtgI CCRYGG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 285, 341, 345
CaiI CAGNNNCTG 1 cut(s) 18
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 1 cut(s) 149
CviAII CATG 2 cut(s) 101, 340
CviJI RGCY 9 cut(s) 90, 113, 206, 234, 270, 280, 320, 385, 422
CviKI_1 RGCY 9 cut(s) 90, 113, 206, 234, 270, 280, 320, 385, 422
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 52, 215, 412
DpnII GATC 3 cut(s) 50, 213, 410
DriI GACNNNNNGTC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 163
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 100, 189
Eco32I GATATC 1 cut(s) 67
Eco88I CYCGRG 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 270
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 100, 189
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 100, 189
FaeI CATG 2 cut(s) 104, 343
FaiI YATR 8 cut(s) 81, 102, 120, 167, 173, 332, 341, 399
FatI CATG 2 cut(s) 100, 339
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 3 cut(s) 204, 281, 383
Fsp4HI GCNGC 3 cut(s) 204, 281, 383
GlaI GCGC 1 cut(s) 348
GluI GCNGC 3 cut(s) 204, 281, 383
HaeIII GGCC 2 cut(s) 234, 320
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 104, 343
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 1 cut(s) 324
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 150, 377
Hpy188I TCNGA 3 cut(s) 35, 58, 230
Hpy188III TCNNGA 3 cut(s) 134, 211, 265
Hpy8I GTNNAC 2 cut(s) 150, 377
Hpy99I CGWCG 2 cut(s) 140, 143
HpyCH4V TGCA 8 cut(s) 203, 242, 283, 334, 339, 355, 361, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 257, 326, 340
HpyF3I CTNAG 1 cut(s) 55
Hsp92II CATG 2 cut(s) 104, 343
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 3 cut(s) 50, 213, 410
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 9 cut(s) 4, 25, 100, 257, 275, 284, 302, 347, 421
Lsp1109I GCAGC 3 cut(s) 215, 267, 394
LweI GCATC 1 cut(s) 394
MalI GATC 3 cut(s) 52, 215, 412
MboI GATC 3 cut(s) 50, 213, 410
MboII GAAGA 4 cut(s) 48, 119, 150, 206
MflI RGATCY 3 cut(s) 50, 213, 410
MhlI GDGCHC 2 cut(s) 262, 379
MlyI GAGTC 1 cut(s) 333
MnlI CCTC 6 cut(s) 64, 137, 224, 290, 303, 398
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 2 cut(s) 185, 424
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 4 cut(s) 248, 257, 326, 340
NcoI CCATGG 1 cut(s) 100
NdeII GATC 3 cut(s) 50, 213, 410
NlaIII CATG 2 cut(s) 104, 343
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 1 cut(s) 343
NspV TTCGAA 1 cut(s) 25
PaeI GCATGC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 253
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 3 cut(s) 205, 282, 384
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspPI GGNCC 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 18
PsuI RGATCY 3 cut(s) 50, 213, 410
SaqAI TTAA 2 cut(s) 185, 424
SatI GCNGC 3 cut(s) 204, 281, 383
Sau3AI GATC 3 cut(s) 50, 213, 410
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 2 cut(s) 262, 379
SetI ASST 5 cut(s) 282, 366, 372, 387, 424
SfaNI GCATC 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 100, 189
TaqI TCGA 3 cut(s) 25, 256, 295
Tru1I TTAA 2 cut(s) 185, 424
Tru9I TTAA 2 cut(s) 185, 424
TscAI CASTG 1 cut(s) 294
TseI GCWGC 3 cut(s) 203, 280, 382
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 18
VneI GTGCAC 1 cut(s) 375
XceI RCATGY 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.