Rh2BG121400

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016630
Physical Location & Seq
Forward (+)
10319224 .. 10319833
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG121400.1

Sequence Viewer

Length: 483 bp
ATGGGCACTTCCGGTAACTGGTTCAGAAGAATCAGAAAAAAGTTTGTGAGATCCTCCGACAGAGATATCATTGTCATCTATTCCAACACCAGCCCAAGCTCCCATGGAGAAGGCGCTCATTATGAAGTCCTCATTCGCGACGATCCTTCATCTACAATGTCTTCGTTCAGAACCAGAGAGAGAATTTTAACCAAGGAAGACATTGCAGCCATCAAGATCCAAGCATTTTTCAGAGGCCAACTTGCAAGACAAGCATTTCGAGCACTCAAGAGCCTGGTGAAGCTGCAAGCACTGGTTAGAGGAGTGTGCGTGAGGAAACAGGCGCGAGTCGCTATGCAATGCATGCGTGCACTTGTCCAGTTGCAGGTCAAGGTTCGCGCCCGGCAGCTCCTCAACGGGTATACTGATGGCAGACCATCACAGCTTAACTATGCTTATAGAGCAAGACCAAGCAAAGGTTTGGAAACTAATAGAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

160

Amino Acids

18.32

Weight (kDa)

11.3

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51380
fragaria_vesca FvH4_1g10950
prunus_persica Prupe.7G176100_v2.0.a1
rosa_laevigata RLG00000016775
rosa_multiflora Rmu_co8446561.1_g000001 Rmu_sc0002559.1_g000002 Rmu_sc0009178.1_g000004
rosa_roxburghii Rroxscaffold_2G00144170
rosa_rugosa Rorug02G0071100
rosa_samantha Rh2AG118200 Rh2BG121400 Rh2CG122900 Rh2DG123100
rosa_wichuraiana Rw2G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AccI GTMKAC 1 cut(s) 401
AccII CGCG 3 cut(s) 138, 325, 378
AclWI GGATC 3 cut(s) 45, 137, 211
AcsI RAATTY 2 cut(s) 183, 474
AfiI CCNNNNNNNGG 3 cut(s) 18, 364, 455
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 4 cut(s) 99, 283, 388, 424
AluI AGCT 4 cut(s) 99, 283, 388, 424
Alw21I GWGCWC 2 cut(s) 265, 352
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 3 cut(s) 45, 137, 211
AoxI GGCC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 206, 283, 385
ApoI RAATTY 2 cut(s) 183, 474
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 3 cut(s) 116, 325, 380
AsuC2I CCSGG 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 289
BaeGI GKGCMC 2 cut(s) 8, 352
BbsI GAAGAC 2 cut(s) 153, 204
Bbv12I GWGCWC 2 cut(s) 265, 352
BbvI GCAGC 3 cut(s) 218, 270, 397
BccI CCATC 3 cut(s) 218, 401, 424
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 3 cut(s) 207, 284, 386
BlsI GCNGC 3 cut(s) 208, 285, 387
Bme1390I CCNGG 2 cut(s) 275, 382
BmrFI CCNGG 2 cut(s) 275, 382
BpiI GAAGAC 2 cut(s) 153, 204
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 103, 192
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 364, 455
Bse1I ACTGG 3 cut(s) 23, 297, 358
Bse3DI GCAATG 2 cut(s) 201, 344
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 103, 192
BseLI CCNNNNNNNGG 3 cut(s) 18, 364, 455
BseMI GCAATG 2 cut(s) 201, 344
BseNI ACTGG 3 cut(s) 23, 297, 358
BseRI GAGGAG 2 cut(s) 315, 380
BseSI GKGCMC 2 cut(s) 8, 352
BseXI GCAGC 3 cut(s) 218, 270, 397
Bsh1236I CGCG 3 cut(s) 138, 325, 378
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 2 cut(s) 265, 352
BsiSI CCGG 2 cut(s) 12, 382
BslI CCNNNNNNNGG 3 cut(s) 18, 364, 455
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 3 cut(s) 8, 265, 352
Bsp143I GATC 3 cut(s) 50, 142, 216
Bsp19I CCATGG 1 cut(s) 103
Bsp68I TCGCGA 1 cut(s) 138
BspANI GGCC 1 cut(s) 237
BspFNI CGCG 3 cut(s) 138, 325, 378
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 3 cut(s) 45, 137, 211
BsrDI GCAATG 2 cut(s) 201, 344
BsrI ACTGG 3 cut(s) 23, 297, 358
BssECI CCNNGG 2 cut(s) 103, 192
BssMI GATC 3 cut(s) 50, 142, 216
BssNAI GTATAC 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 103, 192
Bst1107I GTATAC 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 288, 344, 348
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 3 cut(s) 138, 325, 378
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 3 cut(s) 116, 325, 380
BstKTI GATC 3 cut(s) 53, 145, 219
BstMBI GATC 3 cut(s) 50, 142, 216
BstMWI GCNNNNNNNGC 5 cut(s) 251, 260, 329, 343, 440
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 273, 380
BstSLI GKGCMC 2 cut(s) 8, 352
BstUI CGCG 3 cut(s) 138, 325, 378
BstV1I GCAGC 3 cut(s) 218, 270, 397
BstV2I GAAGAC 2 cut(s) 153, 204
BstX2I RGATCY 2 cut(s) 50, 216
BstYI RGATCY 2 cut(s) 50, 216
BstZ17I GTATAC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 290
BtuMI TCGCGA 1 cut(s) 138
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 3 cut(s) 288, 344, 348
CfoI GCGC 3 cut(s) 116, 325, 380
CviAII CATG 2 cut(s) 104, 343
CviJI RGCY 8 cut(s) 93, 99, 209, 237, 273, 283, 388, 424
CviKI_1 RGCY 8 cut(s) 93, 99, 209, 237, 273, 283, 388, 424
DpnI GATC 3 cut(s) 52, 144, 218
DpnII GATC 3 cut(s) 50, 142, 216
Eco130I CCWWGG 2 cut(s) 103, 192
Eco32I GATATC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 103, 192
EcoT22I ATGCAT 1 cut(s) 344
ErhI CCWWGG 2 cut(s) 103, 192
FaeI CATG 2 cut(s) 107, 346
FaiI YATR 7 cut(s) 105, 123, 335, 344, 402, 432, 438
FatI CATG 2 cut(s) 103, 342
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 3 cut(s) 207, 284, 386
Fsp4HI GCNGC 3 cut(s) 207, 284, 386
GlaI GCGC 3 cut(s) 115, 324, 379
GluI GCNGC 3 cut(s) 207, 284, 386
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 1 cut(s) 237
HapII CCGG 2 cut(s) 12, 382
HhaI GCGC 3 cut(s) 116, 325, 380
Hin1II CATG 2 cut(s) 107, 346
Hin6I GCGC 3 cut(s) 114, 323, 378
HinP1I GCGC 3 cut(s) 114, 323, 378
HinfI GANTC 2 cut(s) 30, 327
HpaII CCGG 2 cut(s) 12, 382
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 350, 402
Hpy188I TCNGA 5 cut(s) 26, 35, 58, 170, 233
Hpy188III TCNNGA 3 cut(s) 137, 214, 268
Hpy8I GTNNAC 2 cut(s) 350, 402
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 104, 156
HpyCH4V TGCA 7 cut(s) 206, 245, 286, 337, 342, 350, 364
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 260, 329, 343, 440
Hsp92II CATG 2 cut(s) 107, 346
HspAI GCGC 3 cut(s) 114, 323, 378
Kzo9I GATC 3 cut(s) 50, 142, 216
LmnI GCTCC 2 cut(s) 104, 393
Lsp1109I GCAGC 3 cut(s) 218, 270, 397
MaeIII GTNAC 1 cut(s) 14
MalI GATC 3 cut(s) 52, 144, 218
MboI GATC 3 cut(s) 50, 142, 216
MboII GAAGA 3 cut(s) 39, 153, 209
MflI RGATCY 2 cut(s) 50, 216
MhlI GDGCHC 3 cut(s) 8, 265, 352
MluCI AATT 2 cut(s) 183, 474
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 2 cut(s) 81, 108
MnlI CCTC 6 cut(s) 64, 140, 227, 293, 306, 401
Mph1103I ATGCAT 1 cut(s) 344
MseI TTAA 2 cut(s) 188, 426
MspI CCGG 2 cut(s) 12, 382
MspR9I CCNGG 2 cut(s) 275, 382
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 3 cut(s) 138, 325, 378
MwoI GCNNNNNNNGC 5 cut(s) 251, 260, 329, 343, 440
NciI CCSGG 1 cut(s) 382
NcoI CCATGG 1 cut(s) 103
NdeII GATC 3 cut(s) 50, 142, 216
NlaIII CATG 2 cut(s) 107, 346
NruI TCGCGA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 3 cut(s) 208, 285, 387
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PsuI RGATCY 2 cut(s) 50, 216
RruI TCGCGA 1 cut(s) 138
SaqAI TTAA 2 cut(s) 188, 426
SatI GCNGC 3 cut(s) 207, 284, 386
Sau3AI GATC 3 cut(s) 50, 142, 216
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 275, 382
SduI GDGCHC 3 cut(s) 8, 265, 352
SetI ASST 7 cut(s) 101, 285, 369, 375, 390, 426, 460
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SphI GCATGC 1 cut(s) 346
Sse9I AATT 2 cut(s) 183, 474
StyD4I CCNGG 2 cut(s) 273, 380
StyI CCWWGG 2 cut(s) 103, 192
TaqI TCGA 1 cut(s) 259
TasI AATT 2 cut(s) 183, 474
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 188, 426
Tru9I TTAA 2 cut(s) 188, 426
TscAI CASTG 1 cut(s) 297
TseI GCWGC 3 cut(s) 206, 283, 385
TspDTI ATGAA 2 cut(s) 138, 138
TspRI CASTG 1 cut(s) 297
VneI GTGCAC 1 cut(s) 348
XapI RAATTY 2 cut(s) 183, 474
XceI RCATGY 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.