Prupe.7G176100_v2.0.a1

iq-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016630
Physical Location & Seq
Reverse (-)
17502341 .. 17503326
986 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G176100.1

Sequence Viewer

Length: 444 bp
ATGTCACACGACAACAAGTATACAAGAATGGGAAGTTACCGGAAATGGTTCAAAACAATTCGAAGAAAGCTAGGCAGATCATCTAACAGAGACATCATTGTCGTCTACACCAACACCAGCCCAAGCACTCATGAAGAATCAGCCAGGTACCAAGATCTCAACGGCTCTGCTTCATCATCTTCATCATCCACAAAGAAGTTTTTATCCCACGAAGATATTGCAGCCATCAAGCTCCAAGCGTTTTTCAGGGGGCATCTTGCCAGGCAAGCATTTCGAGCACTGAGGAGCCTGGTGAAGCTGCAAGCCTTGGTTCGTGGGGCGTGTGTGCGGAAACAAGCACGTATGGCTCTACATTGCATGCATGCGCTTGTCCGGTTGCAGGTCAAGGTCCGTGCACGGCAGCTCCTCAGCGAGTCTGGCAATGGCAGATCCGTCGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IQ

Protein Analysis

148

Amino Acids

16.62

Weight (kDa)

11.39

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016630)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51380
fragaria_vesca FvH4_1g10950
prunus_persica Prupe.7G176100_v2.0.a1
rosa_laevigata RLG00000016775
rosa_multiflora Rmu_co8446561.1_g000001 Rmu_sc0002559.1_g000002 Rmu_sc0009178.1_g000004
rosa_roxburghii Rroxscaffold_2G00144170
rosa_rugosa Rorug02G0071100
rosa_samantha Rh2AG118200 Rh2BG121400 Rh2CG122900 Rh2DG123100
rosa_wichuraiana Rw2G009260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 370
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccI GTMKAC 2 cut(s) 20, 105
AciI CCGC 1 cut(s) 328
AclWI GGATC 1 cut(s) 423
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 3 cut(s) 143, 260, 288
AluBI AGCT 5 cut(s) 70, 232, 298, 403, 440
AluI AGCT 5 cut(s) 70, 232, 298, 403, 440
Alw21I GWGCWC 2 cut(s) 280, 397
Alw26I GTCTC 1 cut(s) 84
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 1 cut(s) 423
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 4 cut(s) 221, 298, 400, 437
Asp700I GAANNNNTTC 1 cut(s) 47
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 280, 397
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 233, 285, 412
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 178, 413
BcgI CGANNNNNNTGC 5 cut(s) 200, 234, 254, 288, 415
BciT130I CCWGG 3 cut(s) 145, 262, 290
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 370
BglII AGATCT 1 cut(s) 154
BisI GCNGC 4 cut(s) 222, 299, 401, 438
BlsI GCNGC 4 cut(s) 223, 300, 402, 439
Bme1390I CCNGG 3 cut(s) 145, 262, 290
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 149, 287
BmrFI CCNGG 3 cut(s) 145, 262, 290
BmsI GCATC 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 2 cut(s) 39, 372
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse3DI GCAATG 2 cut(s) 352, 427
BseBI CCWGG 3 cut(s) 145, 262, 290
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 2 cut(s) 352, 427
BseMII CTCAG 2 cut(s) 272, 421
BseRI GAGGAG 2 cut(s) 298, 395
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 3 cut(s) 233, 285, 412
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 280, 397
BsiSI CCGG 2 cut(s) 40, 373
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 280, 397
Bsp143I GATC 3 cut(s) 77, 154, 428
BspACI CCGC 1 cut(s) 328
BspCNI CTCAG 2 cut(s) 273, 420
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 149, 287
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 352, 427
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 3 cut(s) 77, 154, 428
BssNAI GTATAC 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 145, 262, 290
BstBAI YACGTR 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 61
BstC8I GCNNGC 4 cut(s) 267, 303, 359, 363
BstDEI CTNAG 2 cut(s) 281, 407
BstF5I GGATG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 3 cut(s) 80, 157, 431
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 3 cut(s) 77, 154, 428
BstMWI GCNNNNNNNGC 4 cut(s) 266, 275, 344, 417
BstNI CCWGG 3 cut(s) 145, 262, 290
BstNSI RCATGY 2 cut(s) 361, 365
BstSCI CCNGG 3 cut(s) 143, 260, 288
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 3 cut(s) 233, 285, 412
BstX2I RGATCY 2 cut(s) 154, 428
BstYI RGATCY 2 cut(s) 154, 428
BstZ17I GTATAC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 4 cut(s) 267, 303, 359, 363
CciI TCATGA 1 cut(s) 130
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 148
CviAII CATG 3 cut(s) 131, 358, 362
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 281, 407
DpnI GATC 3 cut(s) 79, 156, 430
DpnII GATC 3 cut(s) 77, 154, 428
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 388
EcoRII CCWGG 3 cut(s) 143, 260, 288
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 134, 361, 365
FaiI YATR 5 cut(s) 21, 132, 344, 359, 363
FatI CATG 3 cut(s) 130, 357, 361
FblI GTMKAC 2 cut(s) 20, 105
Fnu4HI GCNGC 4 cut(s) 222, 299, 401, 438
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 4 cut(s) 222, 299, 401, 438
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 366
GluI GCNGC 4 cut(s) 222, 299, 401, 438
HapII CCGG 2 cut(s) 40, 373
HhaI GCGC 1 cut(s) 367
Hin1II CATG 3 cut(s) 134, 361, 365
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 2 cut(s) 137, 413
HpaII CCGG 2 cut(s) 40, 373
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 21, 106, 395
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 3 cut(s) 21, 106, 395
Hpy99I CGWCG 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 6 cut(s) 221, 301, 357, 361, 379, 395
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 275, 344, 417
HpyF3I CTNAG 2 cut(s) 281, 407
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 3 cut(s) 134, 361, 365
HspAI GCGC 1 cut(s) 365
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 77, 154, 428
LmnI GCTCC 3 cut(s) 237, 285, 408
Lsp1109I GCAGC 3 cut(s) 233, 285, 412
LweI GCATC 1 cut(s) 262
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 3, 35
MalI GATC 3 cut(s) 79, 156, 430
MboI GATC 3 cut(s) 77, 154, 428
MboII GAAGA 4 cut(s) 75, 146, 171, 224
MflI RGATCY 2 cut(s) 154, 428
MhlI GDGCHC 2 cut(s) 280, 397
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 422
MnlI CCTC 2 cut(s) 276, 416
Mph1103I ATGCAT 1 cut(s) 363
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 442
MspI CCGG 2 cut(s) 40, 373
MspR9I CCNGG 3 cut(s) 145, 262, 290
MvaI CCWGG 3 cut(s) 145, 262, 290
MwoI GCNNNNNNNGC 4 cut(s) 266, 275, 344, 417
NdeII GATC 3 cut(s) 77, 154, 428
NlaIII CATG 3 cut(s) 134, 361, 365
NlaIV GGNNCC 2 cut(s) 149, 287
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 363
NspI RCATGY 2 cut(s) 361, 365
NspV TTCGAA 1 cut(s) 61
PaeI GCATGC 2 cut(s) 361, 365
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 223, 300, 402, 439
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 341
Psp6I CCWGG 3 cut(s) 143, 260, 288
PspGI CCWGG 3 cut(s) 143, 260, 288
PspN4I GGNNCC 2 cut(s) 149, 287
PspPI GGNCC 1 cut(s) 388
PsuI RGATCY 2 cut(s) 154, 428
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 442
SatI GCNGC 4 cut(s) 222, 299, 401, 438
Sau3AI GATC 3 cut(s) 77, 154, 428
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 145, 262, 290
SduI GDGCHC 2 cut(s) 280, 397
SetI ASST 9 cut(s) 72, 149, 234, 300, 343, 384, 390, 405, 442
SfaNI GCATC 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 61
SinI GGWCC 1 cut(s) 388
SphI GCATGC 2 cut(s) 361, 365
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 143, 260, 288
StyI CCWWGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 61, 274
TasI AATT 1 cut(s) 57
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 221, 298, 400, 437
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 3 cut(s) 147, 162, 171
TspGWI ACGGA 2 cut(s) 380, 421
TspRI CASTG 1 cut(s) 285
VneI GTGCAC 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 388
XceI RCATGY 2 cut(s) 361, 365
XmiI GTMKAC 2 cut(s) 20, 105
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.