AT3G52160

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019626
Physical Location & Seq
Reverse (-)
19344972 .. 19346668
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52160.1

Sequence Viewer

Length: 1356 bp
ATGGAAAAAGAGGCAACAAAGATGGTGAATGGTGGAGTTAAGTCAAAGTCACCTAAGGGCAGTCCTGATTTCCTCGGATATAATTTGAGATATGTCAAGCTTGGATACATTTACCTTCTCTCTCTCTCACGTACCTTTTGTTTCTTCCTTCCTCCTCTTCTTCTTCTCTTCATCTTTGTTTCTCGATTTCTCCCAATCTTGGCTTTCCCTTTGTCTACCTTCTTCATCCTCCTCATCTATCATTATCTTACTCCTTCCTCTGTTTTTCTTCTCGATTTCTCCTGTTACCGCCCACCCGATCATCTCAAGATCACAAAAAGCGACTTCATCGAGCTGGCAATGAAGTCTGGTAACTTCAACGAGACTGCCATCGAGCTTCAAAGAAAAGTGCTGGACCAATCAGGGATAGGAGAGGAGAGCTACATGCCGAGAGTGGTCTTCAAGCCTGGTCACAGGGTCAATCTTCGTGATGGTCGTGAAGAAGCAGCAATGGTGATCTTTGGAGCAATTGATGAACTTCTTGCAGCGACCAAAATCAATGTGAAGCATATCAAGATCCTGGTGCTAAACTGCGGAGTCCTCAACACCACGCCATCTCTATCGGCCATGGTGATTAACCATTATAAGCTGAGGCATAACACAGAGAGCTACAATCTTGGTGGTATGGGGTGTAGCGCCGGAGTCATAGCCATTGATTTAGCCAAAGATCTTTTAAACGCTCATCAAGGCTCTTACGCTTTGGTGGTGAGCACTGAGATAGTAAGCTTCACTTGGTACTCAGGTAATGACGTCGCGTTGCTTCCACCAAATTGCTTCTTTCGAATGGGAGCAGCTGCAGTTATGCTATCTAGTCGGCGTATCGACAGATGGCGAGCCAAATACCAACTTATGCAGCTAGTAAGAACCCATAAAGGCATGGAAGACACAAGTTACAAGAGCATAGAGTTAAGAGAAGACAGAGATGGGAAACAAGGACTATATGTATCTAGAGATGTAATGGAAGTTGGGCGCCATGCACTGAAAGCAAACATTGCAACGCTTGGTCGTCTTGAGCCTTCCTTTGAACATATATGCGTATTAGCATCGAGTAAGAAAGTACTTGATGACATTCATAAGGATCTCAAGTTGACAGAAGAGAATATGGAGGCATCAAGACGGACATTGGAGCGTTTCGGGAACACATCAAGCAGCAGTATATGGTACGAGCTGGCTTACCTAGAACACAAGGCGAAGATGAAAAGAGGAGATAGGGTTTGGCAAATCGGTTTCGGGTCAGGGTTTAAATGCAATAGTGTTGTATGGAAAGCCCTAAAAAACATTGACCCTCCAAGACATAACAACCCATGGAATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

451

Amino Acids

51.11

Weight (kDa)

9.32

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 85 - 356 9.3e-101 FAE1/Type III polyketide synthase-like protein
Chal_sti_synt_N PF00195 205 - 283 5e-06 Chalcone and stilbene synthases, N-terminal domain
ACP_syn_III_C PF08541 358 - 435 7.8e-11 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 363 - 436 1.4e-07 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52160 AT3G52160
malus_domestica MD04G1001400.v1.1 MD13G1285900.v1.1
prunus_persica Prupe.1G001400_v2.0.a1
pyrus_communis pycom04g00200 pycom420g00270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AatII GACGTC 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 1008
AccI GTMKAC 1 cut(s) 215
AccII CGCG 1 cut(s) 794
AciI CCGC 2 cut(s) 289, 573
AclWI GGATC 2 cut(s) 550, 1125
AcoI YGGCCR 1 cut(s) 603
AcyI GRCGYC 2 cut(s) 789, 1009
AfaI GTAC 4 cut(s) 133, 776, 1098, 1202
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 4 cut(s) 358, 380, 442, 1064
AjnI CCWGG 2 cut(s) 445, 558
Alw21I GWGCWC 1 cut(s) 752
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 2 cut(s) 550, 1125
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 6 cut(s) 485, 524, 830, 833, 892, 1188
AspLEI GCGC 2 cut(s) 677, 1011
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 5 cut(s) 37, 42, 505, 622, 757
AsuII TTCGAA 1 cut(s) 820
AvaII GGWCC 1 cut(s) 394
AxyI CCTNAGG 1 cut(s) 54
BaeI ACNNNNGTAYC 2 cut(s) 766, 799
BanI GGYRCC 1 cut(s) 1008
BbsI GAAGAC 3 cut(s) 430, 927, 960
Bbv12I GWGCWC 1 cut(s) 752
BbvCI CCTCAGC 1 cut(s) 629
BbvI GCAGC 6 cut(s) 497, 536, 820, 842, 904, 1200
BccI CCATC 6 cut(s) 16, 377, 464, 601, 861, 956
BciT130I CCWGG 2 cut(s) 447, 560
BciVI GTATCC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 4 cut(s) 849, 896, 987, 1217
BfmI CTRYAG 1 cut(s) 834
BfoI RGCGCY 2 cut(s) 678, 1012
BfuI GTATCC 1 cut(s) 98
BglII AGATCT 1 cut(s) 706
BisI GCNGC 6 cut(s) 486, 525, 831, 834, 893, 1189
BlsI GCNGC 6 cut(s) 487, 526, 832, 835, 894, 1190
BmcAI AGTACT 1 cut(s) 1098
Bme1390I CCNGG 2 cut(s) 447, 560
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 1 cut(s) 1010
BmrFI CCNGG 2 cut(s) 447, 560
BmsI GCATC 2 cut(s) 1091, 1157
BpiI GAAGAC 3 cut(s) 430, 927, 960
Bpu10I CCTNAGC 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 820
BpuEI CTTGAG 3 cut(s) 290, 1070, 1106
BsaAI YACGTR 1 cut(s) 131
BsaHI GRCGYC 2 cut(s) 789, 1009
BsaJI CCNNGG 3 cut(s) 73, 606, 1343
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 54
Bse3DI GCAATG 3 cut(s) 345, 495, 1029
BseBI CCWGG 2 cut(s) 447, 560
BseDI CCNNGG 3 cut(s) 73, 606, 1343
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 3 cut(s) 345, 495, 1029
BseMII CTCAG 3 cut(s) 620, 744, 792
BseRI GAGGAG 4 cut(s) 144, 221, 428, 1257
BseXI GCAGC 6 cut(s) 497, 536, 820, 842, 904, 1200
Bsh1236I CGCG 1 cut(s) 794
BshFI GGCC 1 cut(s) 605
BshNI GGYRCC 1 cut(s) 1008
BsiHKAI GWGCWC 1 cut(s) 752
BsiSI CCGG 1 cut(s) 678
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 356
BsnI GGCC 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 752
Bsp143I GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
Bsp19I CCATGG 2 cut(s) 606, 1343
BspACI CCGC 2 cut(s) 289, 573
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 3 cut(s) 621, 745, 791
BspFNI CGCG 1 cut(s) 794
BspLI GGNNCC 1 cut(s) 1010
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 2 cut(s) 550, 1125
BspT104I TTCGAA 1 cut(s) 820
BspT107I GGYRCC 1 cut(s) 1008
BsrDI GCAATG 3 cut(s) 345, 495, 1029
BssECI CCNNGG 3 cut(s) 73, 606, 1343
BssMI GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
BssNI GRCGYC 2 cut(s) 789, 1009
BssT1I CCWWGG 2 cut(s) 606, 1343
Bst2UI CCWGG 2 cut(s) 447, 560
Bst6I CTCTTC 3 cut(s) 162, 173, 1128
BstACI GRCGYC 2 cut(s) 789, 1009
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 3 cut(s) 336, 873, 1209
BstDEI CTNAG 4 cut(s) 54, 629, 753, 778
BstDSI CCRYGG 2 cut(s) 606, 1343
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 794
BstH2I RGCGCY 2 cut(s) 678, 1012
BstHHI GCGC 2 cut(s) 677, 1011
BstKTI GATC 6 cut(s) 301, 312, 498, 558, 709, 1120
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
BstMWI GCNNNNNNNGC 2 cut(s) 1022, 1031
BstNI CCWGG 2 cut(s) 447, 560
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 445, 558
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 1 cut(s) 794
BstV1I GCAGC 6 cut(s) 497, 536, 820, 842, 904, 1200
BstV2I GAAGAC 3 cut(s) 430, 927, 960
BstX2I RGATCY 3 cut(s) 555, 706, 1117
BstYI RGATCY 3 cut(s) 555, 706, 1117
Bsu36I CCTNAGG 1 cut(s) 54
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 605
BtgI CCRYGG 2 cut(s) 606, 1343
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 750, 1016
Cac8I GCNNGC 3 cut(s) 336, 873, 1209
CfoI GCGC 2 cut(s) 677, 1011
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 4 cut(s) 132, 775, 1097, 1201
CspCI CAANNNNNGTGG 2 cut(s) 640, 675
CviAII CATG 5 cut(s) 424, 607, 916, 1013, 1344
CviQI GTAC 4 cut(s) 132, 775, 1097, 1201
DdeI CTNAG 4 cut(s) 54, 629, 753, 778
DinI GGCGCC 1 cut(s) 1010
DpnI GATC 6 cut(s) 300, 311, 497, 557, 708, 1119
DpnII GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
DraI TTTAAA 2 cut(s) 714, 1282
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 3 cut(s) 162, 173, 1128
EarI CTCTTC 3 cut(s) 162, 173, 1128
Eco130I CCWWGG 2 cut(s) 606, 1343
Eco47I GGWCC 1 cut(s) 394
Eco81I CCTNAGG 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 445, 558
EcoT14I CCWWGG 2 cut(s) 606, 1343
EgeI GGCGCC 1 cut(s) 1010
EheI GGCGCC 1 cut(s) 1010
ErhI CCWWGG 2 cut(s) 606, 1343
FaeI CATG 5 cut(s) 427, 610, 919, 1016, 1347
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FatI CATG 5 cut(s) 423, 606, 915, 1012, 1343
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 6 cut(s) 486, 525, 831, 834, 893, 1189
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 6 cut(s) 486, 525, 831, 834, 893, 1189
FspBI CTAG 4 cut(s) 849, 896, 987, 1217
GlaI GCGC 2 cut(s) 676, 1010
GluI GCNGC 6 cut(s) 486, 525, 831, 834, 893, 1189
HaeII RGCGCY 2 cut(s) 678, 1012
HaeIII GGCC 1 cut(s) 605
HapII CCGG 1 cut(s) 678
HhaI GCGC 2 cut(s) 677, 1011
Hin1I GRCGYC 2 cut(s) 789, 1009
Hin1II CATG 5 cut(s) 427, 610, 919, 1016, 1347
Hin6I GCGC 2 cut(s) 675, 1009
HinP1I GCGC 2 cut(s) 675, 1009
HincII GTYRAC 1 cut(s) 1128
HindII GTYRAC 1 cut(s) 1128
HindIII AAGCTT 2 cut(s) 98, 763
HinfI GANTC 3 cut(s) 576, 681, 1348
HpaII CCGG 1 cut(s) 678
HphI GGTGA 5 cut(s) 37, 42, 505, 622, 757
Hpy166II GTNNAC 2 cut(s) 216, 1128
Hpy188I TCNGA 2 cut(s) 77, 1355
Hpy8I GTNNAC 2 cut(s) 216, 1128
Hpy99I CGWCG 1 cut(s) 794
HpyAV CCTTC 5 cut(s) 125, 158, 229, 264, 1065
HpyCH4IV ACGT 2 cut(s) 130, 789
HpyCH4V TGCA 6 cut(s) 524, 836, 892, 1016, 1034, 1287
HpyF10VI GCNNNNNNNGC 2 cut(s) 1022, 1031
HpyF3I CTNAG 4 cut(s) 54, 629, 753, 778
HpySE526I ACGT 2 cut(s) 130, 789
Hsp92I GRCGYC 2 cut(s) 789, 1009
Hsp92II CATG 5 cut(s) 427, 610, 919, 1016, 1347
HspAI GCGC 2 cut(s) 675, 1009
KasI GGCGCC 1 cut(s) 1008
Kzo9I GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
LmnI GCTCC 3 cut(s) 503, 827, 1165
Lsp1109I GCAGC 6 cut(s) 497, 536, 820, 842, 904, 1200
LweI GCATC 2 cut(s) 1091, 1157
MaeI CTAG 4 cut(s) 849, 896, 987, 1217
MaeII ACGT 2 cut(s) 130, 789
MaeIII GTNAC 5 cut(s) 48, 284, 350, 449, 929
MalI GATC 6 cut(s) 300, 311, 497, 557, 708, 1119
MboI GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
MfeI CAATTG 1 cut(s) 507
MflI RGATCY 3 cut(s) 555, 706, 1117
MhlI GDGCHC 1 cut(s) 752
MluCI AATT 3 cut(s) 82, 507, 808
Mly113I GGCGCC 1 cut(s) 1009
MlyI GAGTC 2 cut(s) 585, 690
MseI TTAA 5 cut(s) 39, 615, 713, 947, 1281
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 2 cut(s) 447, 560
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 2 cut(s) 447, 560
MvnI CGCG 1 cut(s) 794
MwoI GCNNNNNNNGC 2 cut(s) 1022, 1031
NarI GGCGCC 1 cut(s) 1009
NcoI CCATGG 2 cut(s) 606, 1343
NdeII GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
NlaIII CATG 5 cut(s) 427, 610, 919, 1016, 1347
NlaIV GGNNCC 1 cut(s) 1010
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 48, 449
NspI RCATGY 1 cut(s) 427
NspV TTCGAA 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PfeI GAWTC 1 cut(s) 1348
PkrI GCNGC 6 cut(s) 487, 526, 832, 835, 894, 1190
PleI GAGTC 2 cut(s) 584, 689
PluTI GGCGCC 1 cut(s) 1012
PpsI GAGTC 2 cut(s) 584, 689
Ppu21I YACGTR 1 cut(s) 131
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 445, 558
PspGI CCWGG 2 cut(s) 445, 558
PspN4I GGNNCC 1 cut(s) 1010
PspPI GGNCC 1 cut(s) 394
PstI CTGCAG 1 cut(s) 838
PsuI RGATCY 3 cut(s) 555, 706, 1117
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 4 cut(s) 133, 776, 1098, 1202
RsaNI GTAC 4 cut(s) 132, 775, 1097, 1201
SaqAI TTAA 5 cut(s) 39, 615, 713, 947, 1281
SatI GCNGC 6 cut(s) 486, 525, 831, 834, 893, 1189
Sau3AI GATC 6 cut(s) 298, 309, 495, 555, 706, 1117
Sau96I GGNCC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 1098
SchI GAGTC 2 cut(s) 585, 690
ScrFI CCNGG 2 cut(s) 447, 560
SduI GDGCHC 1 cut(s) 752
SfaNI GCATC 2 cut(s) 1091, 1157
SfcI CTRYAG 1 cut(s) 834
SfoI GGCGCC 1 cut(s) 1010
SfuI TTCGAA 1 cut(s) 820
SinI GGWCC 1 cut(s) 394
SmlI CTYRAG 3 cut(s) 305, 1049, 1121
SmoI CTYRAG 3 cut(s) 305, 1049, 1121
Sse9I AATT 3 cut(s) 82, 507, 808
SsiI CCGC 2 cut(s) 289, 573
SspDI GGCGCC 1 cut(s) 1008
SspMI CTAG 4 cut(s) 849, 896, 987, 1217
StyD4I CCNGG 2 cut(s) 445, 558
StyI CCWWGG 2 cut(s) 606, 1343
TaiI ACGT 2 cut(s) 133, 792
TaqI TCGA 7 cut(s) 184, 273, 330, 372, 820, 861, 1085
TasI AATT 3 cut(s) 82, 507, 808
TatI WGTACW 1 cut(s) 1096
TfiI GAWTC 1 cut(s) 1348
Tru1I TTAA 5 cut(s) 39, 615, 713, 947, 1281
Tru9I TTAA 5 cut(s) 39, 615, 713, 947, 1281
TscAI CASTG 2 cut(s) 757, 1023
TseFI GTSAC 2 cut(s) 48, 449
TseI GCWGC 6 cut(s) 485, 524, 830, 833, 892, 1188
Tsp45I GTSAC 2 cut(s) 48, 449
TspDTI ATGAA 7 cut(s) 160, 214, 316, 356, 528, 1100, 1250
TspGWI ACGGA 1 cut(s) 1171
TspRI CASTG 2 cut(s) 757, 1023
VpaK11BI GGWCC 1 cut(s) 394
XbaI TCTAGA 1 cut(s) 986
XceI RCATGY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 4 cut(s) 849, 896, 987, 1217
ZraI GACGTC 1 cut(s) 790
ZrmI AGTACT 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.