MD13G1285900.v1.1

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0019626
Physical Location & Seq
Forward (+)
44229553 .. 44229762
210 bp
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UTR
Exon/CDS
Intron
MD13G1285900.v1.1.491

Sequence Viewer

Length: 210 bp
ATGCTTATCCTGGCACATATGCACTGGTGGTCAGCAGAGGCTGTGTGCTATACATGGTACAAAGGCAACGATTTCGATATGCTCCTTCCTAATTGTTTCTTTCGAATAGGGGCTGCCTCCATTCTGCTCCCTAGCTCCGATGGCATGCCAAATATGTACTCAAGCAGGTCTAGACTCGTTGATTCATTTGCATTATTAAGATTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

70

Amino Acids

7.99

Weight (kDa)

7.83

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 11 - 47 2.6e-09 FAE1/Type III polyketide synthase-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52160 AT3G52160
malus_domestica MD04G1001400.v1.1 MD13G1285900.v1.1
prunus_persica Prupe.1G001400_v2.0.a1
pyrus_communis pycom04g00200 pycom420g00270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AfaI GTAC 2 cut(s) 59, 158
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
AlwNI CAGNNNCTG 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 103
BbvI GCAGC 1 cut(s) 100
BccI CCATC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 11
BfaI CTAG 2 cut(s) 132, 171
BfuAI ACCTGC 1 cut(s) 156
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 11
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 156
BspT104I TTCGAA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 146
CaiI CAGNNNCTG 1 cut(s) 41
Csp6I GTAC 2 cut(s) 58, 157
CviAII CATG 2 cut(s) 54, 145
CviJI RGCY 3 cut(s) 41, 113, 135
CviKI_1 RGCY 3 cut(s) 41, 113, 135
CviQI GTAC 2 cut(s) 58, 157
DraI TTTAAA 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 57, 148
FaiI YATR 7 cut(s) 18, 20, 51, 55, 80, 146, 155
FatI CATG 2 cut(s) 53, 144
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 132, 171
GluI GCNGC 1 cut(s) 114
Hin1II CATG 2 cut(s) 57, 148
HinfI GANTC 2 cut(s) 174, 182
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 22, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 57, 148
LmnI GCTCC 3 cut(s) 87, 132, 140
LpnPI CCDG 3 cut(s) 10, 23, 151
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 2 cut(s) 132, 171
MluCI AATT 1 cut(s) 91
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 31, 127
MseI TTAA 2 cut(s) 197, 204
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeI CATATG 1 cut(s) 18
NlaIII CATG 2 cut(s) 57, 148
NspI RCATGY 1 cut(s) 148
NspV TTCGAA 1 cut(s) 103
PaeI GCATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 59, 158
RsaNI GTAC 2 cut(s) 58, 157
SaqAI TTAA 2 cut(s) 197, 204
SatI GCNGC 1 cut(s) 114
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 11
SetI ASST 2 cut(s) 137, 170
SfuI TTCGAA 1 cut(s) 103
SmiI ATTTAAAT 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 148
Sse9I AATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 132, 171
StyD4I CCNGG 1 cut(s) 9
SwaI ATTTAAAT 1 cut(s) 205
TaqI TCGA 2 cut(s) 75, 103
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 197, 204
Tru9I TTAA 2 cut(s) 197, 204
TscAI CASTG 1 cut(s) 29
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 170
XceI RCATGY 1 cut(s) 148
XspI CTAG 2 cut(s) 132, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.