pycom04g00200

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0019626
Physical Location & Seq
Reverse (-)
153907 .. 155652
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00200.5

Sequence Viewer

Length: 1299 bp
ATGTTCTTATTTCATTTCACGATCTCAAAGGAGGGGTTCATTGAATTAGTGAGAAATTCGGGCAACTTCAACAATGCTGCCATTGATTTTCAAAAGCGAGTGCTCAAGAGTTTCGGCATAGGCGAAGATAAGTACATGCCCCGAGTGGTATTCTGCCCTGATTACAAGATAAAACTGAAAGACGGAAGAGAAGAGGCAGCTATGGTGATGTTCGGGGCCATAAATGACCTTTTCGGAGCCACCAAAGTCCGGCCAAAGGACATTAGGATCCTCGTGGTGAACTGTGGAGTTCTGAATACGACTCCATCGCTGTCATCCATGGTGATAAAGCATTTCAAGCTAAGGCCTAACGTACAGAGCTTCAACCTTGGTGGAATGGGTTGTGCTGCAGGAATCGTAGCCCTTGATCTTGGCAAAGACCTTATAAATGCTCATCCTGGCTCATATGCACTGGTGGTCAGCACGGAGGCTGTGTGCTATACATGGTACGAAGGCAATGATTTCGATCTGCTCCTTTCTAATTGCTTCTTTCGAATGGGGGCTGCCGCCATGCTGCTCTCTAGCTCCCATCTCAATCGATGGCATGCCAAATATGAACTCAAACAGTATACACACACACGTACGTACAGACTCATTGATCCAGGCATGGATGGGAGGAGCTTCAACAGCATACATTTGAAGGAAGATGCAAAGGCCACACAAGGAGTGTCAATGAGCAAAGACGTGATTCAGGTTGGCGGCCATGCACTCAAGGCCAACATCACCACTATCAGCCCCCTCGTTCTCCCCGTCAGCGAACAATTCCATTTCCTCACCAATTTTCCCTTCAGGGAGAAGAAAACTAATTACAAGCCTTACATTCCTGATTACAAGCTTGCCTTCGAGCACAAGAACCTAGAGCTTACGGAGGACTACATGGAGGCATCCAGGAAAACCCTGGAGCGATTTGGAGACGCTTCTAGTAGTAGTGTTTGGTACGAACTCGCTTACTTAGAGGCAACTTCAAAGATCAAGAGGGGTGGTCGGATTTGGCAGCTCACCTTCGGCTCAGGGTTCAAGTGTAACAGCGTCGTTTGGAAGGCTCTTAAGAATGTTGAGACACCCAGGCAGAGTCCATGGTTTGACGAGTTAGATTTAACTCTTATTGGATGCAATGCATGCCATAATCATATACACCATCAGATTCAATTCTTCTCTTCTATTACTCATCCTTCAGAGTCAGAAATTCAACCAAATAGAAACCTCAAAACCAAAATATTTTTTGACACCAATTCCTTATCTATCTTAACAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

433

Amino Acids

48.98

Weight (kDa)

9.05

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52160 AT3G52160
malus_domestica MD04G1001400.v1.1 MD13G1285900.v1.1
prunus_persica Prupe.1G001400_v2.0.a1
pyrus_communis pycom04g00200 pycom420g00270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AccI GTMKAC 1 cut(s) 608
AciI CCGC 2 cut(s) 546, 738
AclWI GGATC 3 cut(s) 262, 275, 632
AcoI YGGCCR 2 cut(s) 251, 739
AcsI RAATTY 2 cut(s) 55, 1224
AcuI CTGAAG 2 cut(s) 811, 1197
AfaI GTAC 6 cut(s) 134, 354, 488, 622, 626, 977
AfiI CCNNNNNNNGG 2 cut(s) 249, 256
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 617
AjiI CACGTC 1 cut(s) 724
AjnI CCWGG 5 cut(s) 436, 640, 926, 936, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 8 cut(s) 200, 340, 360, 564, 660, 874, 901, 1036
AluI AGCT 8 cut(s) 200, 340, 360, 564, 660, 874, 901, 1036
Alw21I GWGCWC 2 cut(s) 105, 888
Alw26I GTCTC 2 cut(s) 945, 1091
AlwI GGATC 3 cut(s) 262, 275, 632
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 6 cut(s) 216, 251, 344, 693, 739, 753
ApeKI GCWGC 6 cut(s) 77, 197, 386, 542, 553, 1033
ApoI RAATTY 2 cut(s) 55, 1224
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 6 cut(s) 217, 289, 334, 754, 805, 1030
AsuII TTCGAA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 141
BamHI GGATCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 105, 888
BbvI GCAGC 6 cut(s) 64, 209, 373, 529, 540, 1045
BccI CCATC 5 cut(s) 313, 573, 576, 644, 1185
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 5 cut(s) 438, 642, 928, 938, 1105
BcoDI GTCTC 2 cut(s) 945, 1091
BfaI CTAG 3 cut(s) 561, 896, 960
BfmI CTRYAG 1 cut(s) 387
BfrI CTTAAG 1 cut(s) 1085
BisI GCNGC 8 cut(s) 78, 198, 387, 543, 546, 554, 739, 1034
BlsI GCNGC 8 cut(s) 79, 199, 388, 544, 547, 555, 740, 1035
Bme1390I CCNGG 5 cut(s) 438, 642, 928, 938, 1105
BmeT110I CYCGRG 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 724
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 3 cut(s) 217, 238, 269
BmrFI CCNGG 5 cut(s) 438, 642, 928, 938, 1105
BmsI GCATC 3 cut(s) 676, 932, 1139
BpmI CTGGAG 1 cut(s) 959
Bpu10I CCTNAGC 2 cut(s) 341, 1048
Bpu14I TTCGAA 1 cut(s) 532
BpuEI CTTGAG 2 cut(s) 89, 734
Bsa29I ATCGAT 1 cut(s) 577
BsaAI YACGTR 2 cut(s) 620, 624
BsaBI GATNNNNATC 1 cut(s) 504
BsaJI CCNNGG 5 cut(s) 318, 367, 936, 1103, 1115
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 256
Bse1I ACTGG 1 cut(s) 456
Bse3DI GCAATG 2 cut(s) 502, 1159
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 5 cut(s) 438, 642, 928, 938, 1105
BseCI ATCGAT 1 cut(s) 577
BseDI CCNNGG 5 cut(s) 318, 367, 936, 1103, 1115
BseGI GGATG 6 cut(s) 314, 433, 655, 923, 1154, 1207
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 249, 256
BseMI GCAATG 2 cut(s) 502, 1159
BseMII CTCAG 1 cut(s) 1062
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 670
BseXI GCAGC 6 cut(s) 64, 209, 373, 529, 540, 1045
BshFI GGCC 6 cut(s) 218, 253, 346, 695, 741, 755
BshVI ATCGAT 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 105, 888
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 250
BsiWI CGTACG 1 cut(s) 620
BslI CCNNNNNNNGG 2 cut(s) 249, 256
BsmAI GTCTC 2 cut(s) 945, 1091
BsmBI CGTCTC 1 cut(s) 945
BsnI GGCC 6 cut(s) 218, 253, 346, 695, 741, 755
BsoBI CYCGRG 1 cut(s) 141
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 105, 888
Bsp143I GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
Bsp19I CCATGG 2 cut(s) 318, 1115
BspACI CCGC 2 cut(s) 546, 738
BspANI GGCC 6 cut(s) 218, 253, 346, 695, 741, 755
BspCNI CTCAG 1 cut(s) 1061
BspDI ATCGAT 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 217, 238, 269
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 3 cut(s) 262, 275, 632
BspT104I TTCGAA 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 1085
BsrDI GCAATG 2 cut(s) 502, 1159
BsrI ACTGG 1 cut(s) 456
BssECI CCNNGG 5 cut(s) 318, 367, 936, 1103, 1115
BssMI GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
BssNAI GTATAC 1 cut(s) 609
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 3 cut(s) 318, 367, 1115
Bst1107I GTATAC 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 5 cut(s) 438, 642, 928, 938, 1105
Bst4CI ACNGT 2 cut(s) 284, 606
Bst6I CTCTTC 3 cut(s) 181, 186, 1201
BstAFI CTTAAG 1 cut(s) 1085
BstAPI GCANNNNNTGC 1 cut(s) 1158
BstBAI YACGTR 2 cut(s) 620, 624
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 585, 876, 1159
BstDEI CTNAG 3 cut(s) 341, 991, 1048
BstDSI CCRYGG 2 cut(s) 318, 1115
BstF5I GGATG 6 cut(s) 314, 433, 655, 923, 1154, 1207
BstKTI GATC 6 cut(s) 24, 270, 409, 508, 640, 1011
BstMAI GTCTC 2 cut(s) 945, 1091
BstMBI GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
BstMWI GCNNNNNNNGC 4 cut(s) 337, 666, 752, 1158
BstNI CCWGG 5 cut(s) 438, 642, 928, 938, 1105
BstNSI RCATGY 3 cut(s) 139, 587, 1161
BstSCI CCNGG 5 cut(s) 436, 640, 926, 936, 1103
BstSFI CTRYAG 1 cut(s) 387
BstSNI TACGTA 1 cut(s) 624
BstV1I GCAGC 6 cut(s) 64, 209, 373, 529, 540, 1045
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
BstZ17I GTATAC 1 cut(s) 609
Bsu15I ATCGAT 1 cut(s) 577
BsuRI GGCC 6 cut(s) 218, 253, 346, 695, 741, 755
BsuTUI ATCGAT 1 cut(s) 577
BtgI CCRYGG 2 cut(s) 318, 1115
BtgZI GCGATG 1 cut(s) 291
BtrI CACGTC 1 cut(s) 724
BtsCI GGATG 6 cut(s) 314, 433, 655, 923, 1154, 1207
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 585, 876, 1159
Cfr13I GGNCC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 577
CseI GACGC 2 cut(s) 962, 1057
Csp6I GTAC 6 cut(s) 133, 353, 487, 621, 625, 976
CspCI CAANNNNNGTGG 4 cut(s) 352, 387, 1000, 1035
CviQI GTAC 6 cut(s) 133, 353, 487, 621, 625, 976
DdeI CTNAG 3 cut(s) 341, 991, 1048
DpnI GATC 6 cut(s) 23, 269, 408, 507, 639, 1010
DpnII GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
EaeI YGGCCR 2 cut(s) 251, 739
Eam1104I CTCTTC 3 cut(s) 181, 186, 1201
EarI CTCTTC 3 cut(s) 181, 186, 1201
Eco105I TACGTA 1 cut(s) 624
Eco130I CCWWGG 3 cut(s) 318, 367, 1115
Eco147I AGGCCT 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 811, 1197
Eco88I CYCGRG 1 cut(s) 141
EcoRII CCWGG 5 cut(s) 436, 640, 926, 936, 1103
EcoT14I CCWWGG 3 cut(s) 318, 367, 1115
EcoT22I ATGCAT 1 cut(s) 1159
ErhI CCWWGG 3 cut(s) 318, 367, 1115
Esp3I CGTCTC 1 cut(s) 945
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 8 cut(s) 78, 198, 387, 543, 546, 554, 739, 1034
FokI GGATG 6 cut(s) 301, 420, 662, 910, 1161, 1194
Fsp4HI GCNGC 8 cut(s) 78, 198, 387, 543, 546, 554, 739, 1034
FspBI CTAG 3 cut(s) 561, 896, 960
GluI GCNGC 8 cut(s) 78, 198, 387, 543, 546, 554, 739, 1034
GsuI CTGGAG 1 cut(s) 959
HaeIII GGCC 6 cut(s) 218, 253, 346, 695, 741, 755
HapII CCGG 1 cut(s) 250
HgaI GACGC 2 cut(s) 962, 1057
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 7 cut(s) 301, 393, 630, 727, 1111, 1183, 1217
HpaII CCGG 1 cut(s) 250
HphI GGTGA 6 cut(s) 217, 289, 334, 754, 805, 1030
Hpy166II GTNNAC 2 cut(s) 280, 609
Hpy188I TCNGA 6 cut(s) 236, 294, 1026, 1182, 1216, 1222
Hpy188III TCNNGA 4 cut(s) 19, 106, 863, 1012
Hpy8I GTNNAC 2 cut(s) 280, 609
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 7 cut(s) 485, 673, 835, 889, 1051, 1072, 1221
HpyCH4III ACNGT 2 cut(s) 284, 606
HpyCH4IV ACGT 4 cut(s) 351, 619, 623, 723
HpyCH4V TGCA 6 cut(s) 389, 449, 689, 746, 1152, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 666, 752, 1158
HpyF3I CTNAG 3 cut(s) 341, 991, 1048
HpySE526I ACGT 4 cut(s) 351, 619, 623, 723
Kzo9I GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
LmnI GCTCC 5 cut(s) 236, 516, 569, 657, 940
Lsp1109I GCAGC 6 cut(s) 64, 209, 373, 529, 540, 1045
LweI GCATC 3 cut(s) 676, 932, 1139
MaeI CTAG 3 cut(s) 561, 896, 960
MaeII ACGT 4 cut(s) 351, 619, 623, 723
MaeIII GTNAC 1 cut(s) 1061
MalI GATC 6 cut(s) 23, 269, 408, 507, 639, 1010
MboI GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
MboII GAAGA 7 cut(s) 137, 198, 203, 695, 847, 1183, 1188
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 105, 888
MluCI AATT 9 cut(s) 44, 55, 520, 800, 817, 844, 1187, 1224, 1270
MlyI GAGTC 4 cut(s) 295, 624, 1120, 1226
MmeI TCCRAC 1 cut(s) 1004
Mph1103I ATGCAT 1 cut(s) 1159
MseI TTAA 3 cut(s) 1086, 1136, 1286
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 5 cut(s) 438, 642, 928, 938, 1105
MvaI CCWGG 5 cut(s) 438, 642, 928, 938, 1105
MwoI GCNNNNNNNGC 4 cut(s) 337, 666, 752, 1158
NcoI CCATGG 2 cut(s) 318, 1115
NdeI CATATG 1 cut(s) 445
NdeII GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
NlaIV GGNNCC 3 cut(s) 217, 238, 269
NsiI ATGCAT 1 cut(s) 1159
NspI RCATGY 3 cut(s) 139, 587, 1161
NspV TTCGAA 1 cut(s) 532
PaeI GCATGC 2 cut(s) 587, 1161
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 786
PfeI GAWTC 3 cut(s) 393, 727, 1183
Pfl23II CGTACG 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 926
PkrI GCNGC 8 cut(s) 79, 199, 388, 544, 547, 555, 740, 1035
PleI GAGTC 4 cut(s) 295, 624, 1119, 1225
PpsI GAGTC 4 cut(s) 295, 624, 1119, 1225
Ppu21I YACGTR 2 cut(s) 620, 624
PsiI TTATAA 1 cut(s) 425
Psp6I CCWGG 5 cut(s) 436, 640, 926, 936, 1103
PspGI CCWGG 5 cut(s) 436, 640, 926, 936, 1103
PspLI CGTACG 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 217, 238, 269
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 267
RsaI GTAC 6 cut(s) 134, 354, 488, 622, 626, 977
RsaNI GTAC 6 cut(s) 133, 353, 487, 621, 625, 976
SaqAI TTAA 3 cut(s) 1086, 1136, 1286
SatI GCNGC 8 cut(s) 78, 198, 387, 543, 546, 554, 739, 1034
Sau3AI GATC 6 cut(s) 21, 267, 406, 505, 637, 1008
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 4 cut(s) 295, 624, 1120, 1226
ScrFI CCNGG 5 cut(s) 438, 642, 928, 938, 1105
SduI GDGCHC 2 cut(s) 105, 888
SfaNI GCATC 3 cut(s) 676, 932, 1139
SfcI CTRYAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 532
SmlI CTYRAG 3 cut(s) 104, 749, 1085
SmoI CTYRAG 3 cut(s) 104, 749, 1085
SnaBI TACGTA 1 cut(s) 624
SphI GCATGC 2 cut(s) 587, 1161
Sse9I AATT 9 cut(s) 44, 55, 520, 800, 817, 844, 1187, 1224, 1270
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 2 cut(s) 546, 738
SspI AATATT 1 cut(s) 1257
SspMI CTAG 3 cut(s) 561, 896, 960
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 5 cut(s) 436, 640, 926, 936, 1103
StyI CCWWGG 3 cut(s) 318, 367, 1115
TaaI ACNGT 2 cut(s) 284, 606
TaiI ACGT 4 cut(s) 354, 622, 626, 726
TaqI TCGA 4 cut(s) 504, 532, 577, 882
TasI AATT 9 cut(s) 44, 55, 520, 800, 817, 844, 1187, 1224, 1270
TatI WGTACW 1 cut(s) 132
TauI GCSGC 2 cut(s) 548, 741
TfiI GAWTC 3 cut(s) 393, 727, 1183
Tru1I TTAA 3 cut(s) 1086, 1136, 1286
Tru9I TTAA 3 cut(s) 1086, 1136, 1286
TscAI CASTG 1 cut(s) 456
TseI GCWGC 6 cut(s) 77, 197, 386, 542, 553, 1033
TspDTI ATGAA 2 cut(s) 28, 609
TspGWI ACGGA 3 cut(s) 198, 479, 920
TspRI CASTG 1 cut(s) 456
Vha464I CTTAAG 1 cut(s) 1085
XapI RAATTY 2 cut(s) 55, 1224
XceI RCATGY 3 cut(s) 139, 587, 1161
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 3 cut(s) 561, 896, 960
Zsp2I ATGCAT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.