Prupe.1G001400_v2.0.a1

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0019626
Physical Location & Seq
Reverse (-)
199688 .. 202025
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G001400.1

Sequence Viewer

Length: 1548 bp
ATGGCAAGAGAGCAGGAGCAATTTTCAGCAGAGATCGAAGACCGGGGCTCTGAGAATATGGGTCCCAATGGTGGATCCTTCTTTGTGTCTGTAAAGGTACGGCAACGCTTGCCGGATTTTCTTGGTTCAGTTAATCTGAAATATGTGGAGCTTGGTTACAGTTATCTCATCAGCCATAGGCTCTACTTCTTGCTTGTACCGGTTCTCATTGTGCTCTGCAGTGCTGAAATAGGAAAGCTGAAAGATCTCTTTCCAAATCCGAAATGTGAACTTACGGATGCTCTCTTTATATTGGTATTATTGGGATTCATTCTGTATATTTTTCTTGACTTGGCACCTCGCTCTACTTATTTAGTTGATTTTGCTTGTTTTCGTCCACCAGATGAACTAAAGATCTCAAAGGAGGAATTCATTGAATTAGCAAGAAATTCAGGCAACTTCAATGATGCTGCCATAGATTTTCAAAAACGAGTTCTCAAGAGTTCTGGCATAGGCCAAGAGACGTACATGCCCCGAGTAGTGTTTCACCCTGATTACAAAATAAGTCTAAAAGATGGAAGAGAAGAGGCAGCTATGGTGATGTTTGGGGCCATAAATGACCTTTTCAGAGCCACCAAAATCCGGCCAAAGGACATTGGAATCCTAGTAGTGAACTGTGGAGTTCTGAATACCACTCCATCGCTGTCATCAATGGTAATAAACCATTTTAAGCTGAAGCCTAACATTCAGAGCTTCAACCTCGGTGGAATGGGTTGTGCTGCAGGAATCATAGCCATTGATCTGGCAAAAGACCTCTTGAATGCTTATCCTGGCACATATGCACTGGTAGTGAGCACAGAGGCCGTGTGCTACACATGGTACAAAGGCAACGACTTGGACATGCTGCTTTCTAATTGCTTCTTTCGGATGGGGGCTGCAGCCATGTTGCTCTCTAGCTCCCGTCTCGACAGATGGCGTGCCAAGTATGAACTCAAGCAGCTGGTTCGAACTCACAAAGGCATGGATGAGAGAAGCTTCGAAAGCATACATTTAAAGGAAGATGCAAAAGGGACACAAGGCTTGTCAGTGAGCAAAGATGTGGTTGAGGTTGGTGGGCATGCACTCAAGGCCAACATCACCACCCTTGGCCCCCTAGTTCTCCCCGTCTCCGAACAATTCCATTTCCTCACCACTTTGCTCGTCAGGAAGAAGAAAACTAATTACAAGCCATACATCCCTGACTACAAGCTCGCCTTCAAGCATGTGTGTATATTAGCAGCAAGCAACAAGGTGCTCGATGAAATACAGAAGAACCTGGAGCTTACAGAGGAGTACATGGAGGCATCCAGGAAAACCTTGGAGCGATTTGGAAACACTTCTAGTAGTAGCGTTTGGTATGAACTCGCTTATTTAGAGGCAACTTCCAAGATCAAGAGGGGTGATCGGGTTTGGCAACTCGCTTTCGGCTCAGGGTTCAAGTGTAACAGCGTCGTTTGGAAGGCTCTTAACAATGTTGGGAGGCCTAAGCAGAATCCATGGCTTGATGAGGACAAAGATGAGTGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

516

Amino Acids

58.01

Weight (kDa)

8.48

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019626)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52160 AT3G52160
malus_domestica MD04G1001400.v1.1 MD13G1285900.v1.1
prunus_persica Prupe.1G001400_v2.0.a1
pyrus_communis pycom04g00200 pycom420g00270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AclWI GGATC 2 cut(s) 69, 82
AcoI YGGCCR 1 cut(s) 623
AcsI RAATTY 2 cut(s) 407, 427
AcuI CTGAAG 1 cut(s) 734
AfaI GTAC 5 cut(s) 99, 198, 506, 860, 1313
AfiI CCNNNNNNNGG 3 cut(s) 71, 621, 628
AgeI ACCGGT 1 cut(s) 199
AgsI TTSAA 7 cut(s) 416, 442, 464, 736, 799, 1237, 1456
AjnI CCWGG 3 cut(s) 808, 1293, 1325
Alw21I GWGCWC 3 cut(s) 216, 836, 1275
Alw26I GTCTC 3 cut(s) 494, 947, 1150
AlwI GGATC 2 cut(s) 69, 82
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 7 cut(s) 493, 588, 623, 840, 1107, 1126, 1499
ApeKI GCWGC 8 cut(s) 449, 569, 758, 883, 914, 917, 976, 1256
ApoI RAATTY 2 cut(s) 407, 427
AsiGI ACCGGT 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 1354
AspS9I GGNCC 3 cut(s) 62, 588, 1127
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 5 cut(s) 518, 589, 1108, 1159, 1430
AsuII TTCGAA 2 cut(s) 985, 1017
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 1 cut(s) 62
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 3 cut(s) 216, 836, 1275
BbvI GCAGC 8 cut(s) 436, 581, 745, 870, 901, 929, 988, 1268
BccI CCATC 4 cut(s) 548, 685, 901, 945
BceAI ACGGC 2 cut(s) 116, 827
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 3 cut(s) 810, 1295, 1327
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 494, 947, 1150
BfaI CTAG 4 cut(s) 644, 933, 1133, 1359
BfmI CTRYAG 3 cut(s) 217, 759, 915
BglII AGATCT 2 cut(s) 244, 393
BisI GCNGC 8 cut(s) 450, 570, 759, 884, 915, 918, 977, 1257
BlsI GCNGC 8 cut(s) 451, 571, 760, 885, 916, 919, 978, 1258
Bme1390I CCNGG 4 cut(s) 44, 810, 1295, 1327
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 513
BmgT120I GGNCC 3 cut(s) 62, 588, 1127
BmiI GGNNCC 6 cut(s) 63, 64, 76, 336, 589, 1129
BmrFI CCNGG 4 cut(s) 44, 810, 1295, 1327
BmsI GCATC 4 cut(s) 268, 436, 1030, 1331
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 1316
Bpu10I CCTNAGC 2 cut(s) 1447, 1503
Bpu14I TTCGAA 2 cut(s) 985, 1017
BpuEI CTTGAG 3 cut(s) 461, 956, 1088
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 5 cut(s) 43, 739, 1123, 1335, 1514
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 621, 628
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 828
BseBI CCWGG 3 cut(s) 810, 1295, 1327
BseDI CCNNGG 5 cut(s) 43, 739, 1123, 1335, 1514
BseGI GGATG 5 cut(s) 283, 912, 1009, 1212, 1322
BseLI CCNNNNNNNGG 3 cut(s) 71, 621, 628
BseMII CTCAG 2 cut(s) 42, 1461
BseNI ACTGG 1 cut(s) 828
BseRI GAGGAG 1 cut(s) 1322
BseXI GCAGC 8 cut(s) 436, 581, 745, 870, 901, 929, 988, 1268
BshFI GGCC 7 cut(s) 495, 590, 625, 842, 1109, 1128, 1501
BshNI GGYRCC 1 cut(s) 334
BshTI ACCGGT 1 cut(s) 199
BsiHKAI GWGCWC 3 cut(s) 216, 836, 1275
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 4 cut(s) 43, 113, 200, 622
BslFI GGGAC 2 cut(s) 48, 1063
BslI CCNNNNNNNGG 3 cut(s) 71, 621, 628
BsmAI GTCTC 3 cut(s) 494, 947, 1150
BsmBI CGTCTC 3 cut(s) 494, 947, 1150
BsmFI GGGAC 2 cut(s) 48, 1063
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 7 cut(s) 495, 590, 625, 842, 1109, 1128, 1501
BsoBI CYCGRG 1 cut(s) 513
Bsp119I TTCGAA 2 cut(s) 985, 1017
Bsp1286I GDGCHC 4 cut(s) 50, 216, 836, 1275
Bsp143I GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
Bsp19I CCATGG 1 cut(s) 1514
BspANI GGCC 7 cut(s) 495, 590, 625, 842, 1109, 1128, 1501
BspCNI CTCAG 2 cut(s) 43, 1460
BspLI GGNNCC 6 cut(s) 63, 64, 76, 336, 589, 1129
BspMAI CTGCAG 3 cut(s) 221, 763, 919
BspPI GGATC 2 cut(s) 69, 82
BspT104I TTCGAA 2 cut(s) 985, 1017
BspT107I GGYRCC 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 828
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 5 cut(s) 43, 739, 1123, 1335, 1514
BssMI GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
BssT1I CCWWGG 3 cut(s) 1123, 1335, 1514
Bst2UI CCWGG 3 cut(s) 810, 1295, 1327
Bst4CI ACNGT 2 cut(s) 161, 656
Bst6I CTCTTC 2 cut(s) 553, 558
BstAPI GCANNNNNTGC 1 cut(s) 109
BstBI TTCGAA 2 cut(s) 985, 1017
BstC8I GCNNGC 5 cut(s) 110, 957, 1098, 1230, 1261
BstDEI CTNAG 3 cut(s) 51, 1447, 1503
BstDSI CCRYGG 1 cut(s) 1514
BstF5I GGATG 5 cut(s) 283, 912, 1009, 1212, 1322
BstKTI GATC 7 cut(s) 36, 77, 247, 396, 781, 1410, 1423
BstMAI GTCTC 3 cut(s) 494, 947, 1150
BstMBI GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
BstMWI GCNNNNNNNGC 3 cut(s) 109, 1020, 1106
BstNI CCWGG 3 cut(s) 810, 1295, 1327
BstNSI RCATGY 4 cut(s) 511, 883, 1100, 1244
BstSCI CCNGG 4 cut(s) 42, 808, 1293, 1325
BstSFI CTRYAG 3 cut(s) 217, 759, 915
BstV1I GCAGC 8 cut(s) 436, 581, 745, 870, 901, 929, 988, 1268
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 74, 244, 393
BstXI CCANNNNNNTGG 1 cut(s) 781
BstYI RGATCY 3 cut(s) 74, 244, 393
BsuRI GGCC 7 cut(s) 495, 590, 625, 842, 1109, 1128, 1501
BtgI CCRYGG 1 cut(s) 1514
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 5 cut(s) 283, 912, 1009, 1212, 1322
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 3 cut(s) 226, 821, 1071
Cac8I GCNNGC 5 cut(s) 110, 957, 1098, 1230, 1261
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 3 cut(s) 62, 588, 1127
CseI GACGC 1 cut(s) 1456
Csp6I GTAC 5 cut(s) 98, 197, 505, 859, 1312
CspAI ACCGGT 1 cut(s) 199
CspCI CAANNNNNGTGG 2 cut(s) 724, 759
CviAII CATG 9 cut(s) 508, 855, 880, 922, 1000, 1097, 1241, 1315, 1515
CviQI GTAC 5 cut(s) 98, 197, 505, 859, 1312
DdeI CTNAG 3 cut(s) 51, 1447, 1503
DpnI GATC 7 cut(s) 35, 76, 246, 395, 780, 1409, 1422
DpnII GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
DraI TTTAAA 1 cut(s) 1032
EaeI YGGCCR 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 553, 558
EarI CTCTTC 2 cut(s) 553, 558
Eco130I CCWWGG 3 cut(s) 1123, 1335, 1514
Eco147I AGGCCT 1 cut(s) 1501
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 808, 1293, 1325
EcoT14I CCWWGG 3 cut(s) 1123, 1335, 1514
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 3 cut(s) 1123, 1335, 1514
Esp3I CGTCTC 3 cut(s) 494, 947, 1150
FaeI CATG 9 cut(s) 511, 858, 883, 925, 1003, 1100, 1244, 1318, 1518
FalI AAGNNNNNCTT 2 cut(s) 1217, 1249
FaqI GGGAC 2 cut(s) 48, 1063
FatI CATG 9 cut(s) 507, 854, 879, 921, 999, 1096, 1240, 1314, 1514
FauNDI CATATG 1 cut(s) 817
Fnu4HI GCNGC 8 cut(s) 450, 570, 759, 884, 915, 918, 977, 1257
FokI GGATG 5 cut(s) 290, 919, 1016, 1199, 1309
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 8 cut(s) 450, 570, 759, 884, 915, 918, 977, 1257
FspBI CTAG 4 cut(s) 644, 933, 1133, 1359
GluI GCNGC 8 cut(s) 450, 570, 759, 884, 915, 918, 977, 1257
GsuI CTGGAG 1 cut(s) 1316
HaeIII GGCC 7 cut(s) 495, 590, 625, 842, 1109, 1128, 1501
HapII CCGG 4 cut(s) 43, 113, 200, 622
HgaI GACGC 1 cut(s) 1456
Hin1II CATG 9 cut(s) 511, 858, 883, 925, 1003, 1100, 1244, 1318, 1518
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 4 cut(s) 306, 639, 765, 1510
HpaII CCGG 4 cut(s) 43, 113, 200, 622
HphI GGTGA 5 cut(s) 518, 589, 1108, 1159, 1430
Hpy166II GTNNAC 3 cut(s) 269, 377, 652
Hpy188I TCNGA 8 cut(s) 52, 138, 261, 608, 666, 729, 906, 1150
Hpy188III TCNNGA 6 cut(s) 326, 478, 796, 944, 1183, 1411
Hpy8I GTNNAC 3 cut(s) 269, 377, 652
Hpy99I CGWCG 1 cut(s) 1472
HpyAV CCTTC 3 cut(s) 88, 1243, 1471
HpyCH4III ACNGT 2 cut(s) 161, 656
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 6 cut(s) 219, 761, 821, 917, 1043, 1100
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 1020, 1106
HpyF3I CTNAG 3 cut(s) 51, 1447, 1503
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 9 cut(s) 511, 858, 883, 925, 1003, 1100, 1244, 1318, 1518
KflI GGGWCCC 1 cut(s) 62
Kzo9I GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
LmnI GCTCC 5 cut(s) 16, 148, 941, 1297, 1339
Lsp1109I GCAGC 8 cut(s) 436, 581, 745, 870, 901, 929, 988, 1268
LweI GCATC 4 cut(s) 268, 436, 1030, 1331
MaeI CTAG 4 cut(s) 644, 933, 1133, 1359
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 2 cut(s) 155, 1460
MalI GATC 7 cut(s) 35, 76, 246, 395, 780, 1409, 1422
MboI GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
MboII GAAGA 7 cut(s) 50, 570, 575, 1049, 1198, 1201, 1300
MflI RGATCY 3 cut(s) 74, 244, 393
MhlI GDGCHC 4 cut(s) 50, 216, 836, 1275
MluCI AATT 7 cut(s) 20, 407, 416, 427, 892, 1154, 1198
MroXI GAANNNNTTC 1 cut(s) 1354
MseI TTAA 4 cut(s) 132, 708, 1031, 1485
MspA1I CMGCKG 1 cut(s) 979
MspI CCGG 4 cut(s) 43, 113, 200, 622
MspR9I CCNGG 4 cut(s) 44, 810, 1295, 1327
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 3 cut(s) 810, 1295, 1327
MwoI GCNNNNNNNGC 3 cut(s) 109, 1020, 1106
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 1514
NdeI CATATG 1 cut(s) 817
NdeII GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
NlaIII CATG 9 cut(s) 511, 858, 883, 925, 1003, 1100, 1244, 1318, 1518
NlaIV GGNNCC 6 cut(s) 63, 64, 76, 336, 589, 1129
NspI RCATGY 4 cut(s) 511, 883, 1100, 1244
NspV TTCGAA 2 cut(s) 985, 1017
PaeI GCATGC 1 cut(s) 1100
PceI AGGCCT 1 cut(s) 1501
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 1 cut(s) 1354
PfeI GAWTC 4 cut(s) 306, 639, 765, 1510
PfoI TCCNGGA 1 cut(s) 1325
PinAI ACCGGT 1 cut(s) 199
PkrI GCNGC 8 cut(s) 451, 571, 760, 885, 916, 919, 978, 1258
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 808, 1293, 1325
PspGI CCWGG 3 cut(s) 808, 1293, 1325
PspN4I GGNNCC 6 cut(s) 63, 64, 76, 336, 589, 1129
PspPI GGNCC 3 cut(s) 62, 588, 1127
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 3 cut(s) 221, 763, 919
PsuI RGATCY 3 cut(s) 74, 244, 393
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 5 cut(s) 99, 198, 506, 860, 1313
RsaNI GTAC 5 cut(s) 98, 197, 505, 859, 1312
SaqAI TTAA 4 cut(s) 132, 708, 1031, 1485
SatI GCNGC 8 cut(s) 450, 570, 759, 884, 915, 918, 977, 1257
Sau3AI GATC 7 cut(s) 33, 74, 244, 393, 778, 1407, 1420
Sau96I GGNCC 3 cut(s) 62, 588, 1127
ScrFI CCNGG 4 cut(s) 44, 810, 1295, 1327
SduI GDGCHC 4 cut(s) 50, 216, 836, 1275
SfaNI GCATC 4 cut(s) 268, 436, 1030, 1331
SfcI CTRYAG 3 cut(s) 217, 759, 915
SfuI TTCGAA 2 cut(s) 985, 1017
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 3 cut(s) 476, 971, 1103
SmoI CTYRAG 3 cut(s) 476, 971, 1103
SphI GCATGC 1 cut(s) 1100
Sse9I AATT 7 cut(s) 20, 407, 416, 427, 892, 1154, 1198
SseBI AGGCCT 1 cut(s) 1501
SspMI CTAG 4 cut(s) 644, 933, 1133, 1359
StuI AGGCCT 1 cut(s) 1501
StyD4I CCNGG 4 cut(s) 42, 808, 1293, 1325
StyI CCWWGG 3 cut(s) 1123, 1335, 1514
TaaI ACNGT 2 cut(s) 161, 656
TaiI ACGT 1 cut(s) 506
TaqI TCGA 5 cut(s) 36, 945, 985, 1017, 1275
TasI AATT 7 cut(s) 20, 407, 416, 427, 892, 1154, 1198
TatI WGTACW 1 cut(s) 1311
TfiI GAWTC 4 cut(s) 306, 639, 765, 1510
Tru1I TTAA 4 cut(s) 132, 708, 1031, 1485
Tru9I TTAA 4 cut(s) 132, 708, 1031, 1485
TscAI CASTG 3 cut(s) 226, 828, 1071
TseI GCWGC 8 cut(s) 449, 569, 758, 883, 914, 917, 976, 1256
TspDTI ATGAA 6 cut(s) 298, 399, 400, 981, 1293, 1392
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 3 cut(s) 226, 828, 1071
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 2 cut(s) 407, 427
XceI RCATGY 4 cut(s) 511, 883, 1100, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 1333
XmnI GAANNNNTTC 1 cut(s) 1354
XspI CTAG 4 cut(s) 644, 933, 1133, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.