Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011071

Physical Location & Seq

Genomic Coordinates Forward (+)

19792466 .. 19796807

Gene Structure 4342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGATGAACACTTCTAATGGAATGATATCAGCGCCATCTTCGTCGTCTTCACCGGCGGCGAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTACTCAGGTAACTATAGCTCAGCTTAAGGAAAGAGCTGCTCCTTCGACTCCAACTGGTACTTCGTCGGGTTATAGTGCTAGTAGCGGGTTTCGTTCAGCAACAGCGAGGTTGCTAGGAACTGGAAATGGGAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGCGGTAAAAGTGTGAGTACAAGTTCAAGAATTAGTGGCTCCTTCGCTGCTTCTAATTCTAATACTTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGATGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGGATCCAGTAAAGTCTATCCATTTCAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTTACTTATTGGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAGTTACAGGACGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAGTCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGAACAAAGATGGTGCCACTGAATCAACATTTCCTGCTATAAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCCTGTTGCGAGATGGCATATATGTCAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGGGGCACACTTGGCAACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCAGAAGCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTATGGATGGAAAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGAGGATCGGAAAGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGTGGAGTAGCGTTTGATTCCAATTGGTCGTCACCAAACTCGGATGGGTCAGGAGAGCATGTCATGTACCGTTTTGGATCAGTTGGTCAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGTAGTTCCACTTAGGCGAGCTCCAGGAGGATCTCCAACTTACAGCACAGGAAGCTCAGCTCACTGGGACAATGTCATACCAATGGGAACTCTTCAACCGGCTCCTTGCAAACGCGATGTTCCAAAGCTGTCACCGATCATAGCACACCGAGTTCACACAGAGCCCCTCTCTGGCTTGATGTTCACACAAGAATCAGTCGTTACGGCTTGTCGAGAAGGCCATATAAAGATCTGGACACGGCCCAGTGAATCAGAAACCCAAACTAACAGCTCAGAAGCAAATCCTACAACTGCCCTCTTGAGCACAAGCTTCACGAAAGACAACAAAGCTTCACTGAGCAGCAAGATCATCAGTGGCTCTACTTTCAAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0042221 GO:0045013 GO:0045892 GO:0045934 GO:0045990 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061984 GO:0061985 GO:0065007 GO:0070887 GO:0071496 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

558

Amino Acids

59.88

Weight (kDa)

7.63

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RIG_2nd	PF23775	148 - 364	8.1e-07	RIG second beta-propeller
WDR55	PF24796	290 - 397	5.2e-08	WDR55
Beta-prop_THOC3	PF25174	292 - 387	1.8e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	292 - 434	2.2e-12	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	296 - 397	1.4e-06	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	301 - 394	4.2e-07	TEP-1 second beta-propeller
Beta-prop_WDR5	PF25175	305 - 397	1.5e-13	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	309 - 398	4.7e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	350 - 430	1.2e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37160 AT2G37160 AT3G53390
fragaria_vesca	FvH4_6g15710 FvH4_6g15710
malus_domestica	MD04G1099900.v1.1 MD12G1120000.v1.1
prunus_persica	Prupe.6G238200_v2.0.a1
pyrus_communis	pycom04g09500 pycom12g11890
rosa_chinensis	RchiOBHm_Chr3g0469411
rosa_laevigata	RLG00000024351
rosa_multiflora	Rmu_sc0005274.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411910
rosa_rugosa	Rorug03G0101600
rosa_samantha	Rh3AG150600 Rh3BG174300 Rh3CG165300 Rh3DG201100
rosa_wichuraiana	Rw3G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AatII	GACGTC	1 cut(s)	648
AccB1I	GGYRCC	2 cut(s)	727, 803
AccII	CGCG	1 cut(s)	1416
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	3 cut(s)	56, 261, 342
AclWI	GGATC	7 cut(s)	497, 510, 551, 830, 1134, 1255, 1339
AcsI	RAATTY	2 cut(s)	421, 598
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	2 cut(s)	98, 645
AfaI	GTAC	5 cut(s)	235, 358, 614, 1076, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	1291, 1472
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	9 cut(s)	94, 366, 454, 487, 534, 915, 1109, 1397, 1669
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	2 cut(s)	730, 1324
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
Alw21I	GWGCWC	4 cut(s)	670, 1042, 1324, 1607
Alw26I	GTCTC	3 cut(s)	152, 622, 652
AlwI	GGATC	7 cut(s)	497, 510, 551, 830, 1134, 1255, 1339
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	2 cut(s)	1519, 1541
ApeKI	GCWGC	3 cut(s)	212, 386, 1641
ApoI	RAATTY	2 cut(s)	421, 598
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	2 cut(s)	34, 316
AspS9I	GGNCC	2 cut(s)	1282, 1542
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	6 cut(s)	42, 749, 1103, 1160, 1194, 1425
AvaII	GGWCC	1 cut(s)	1282
BaeGI	GKGCMC	1 cut(s)	949
BamHI	GGATCC	1 cut(s)	502
BanI	GGYRCC	2 cut(s)	727, 803
BanII	GRGCYC	2 cut(s)	1324, 1467
BbsI	GAAGAC	2 cut(s)	39, 442
Bbv12I	GWGCWC	4 cut(s)	670, 1042, 1324, 1607
BbvI	GCAGC	3 cut(s)	199, 373, 1653
BceAI	ACGGC	3 cut(s)	294, 1521, 1556
BciT130I	CCWGG	2 cut(s)	732, 1326
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	152, 622, 652
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	5 cut(s)	255, 290, 659, 714, 1010
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	1530
BisI	GCNGC	4 cut(s)	57, 213, 387, 1642
BlpI	GCTNAGC	2 cut(s)	195, 1357
BlsI	GCNGC	4 cut(s)	58, 214, 388, 1643
Bme1390I	CCNGG	3 cut(s)	75, 732, 1326
Bme18I	GGWCC	1 cut(s)	1282
BmgT120I	GGNCC	2 cut(s)	1282, 1542
BmiI	GGNNCC	7 cut(s)	308, 379, 504, 729, 805, 1283, 1404
BmrFI	CCNGG	3 cut(s)	75, 732, 1326
BmrI	ACTGGG	2 cut(s)	1375, 1539
BmsI	GCATC	2 cut(s)	454, 553
BmuI	ACTGGG	2 cut(s)	1375, 1539
BpiI	GAAGAC	2 cut(s)	39, 442
BplI	GAGNNNNNCTC	2 cut(s)	1454, 1486
BpmI	CTGGAG	3 cut(s)	753, 1107, 1308
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu1102I	GCTNAGC	2 cut(s)	195, 1357
BpuEI	CTTGAG	2 cut(s)	1307, 1621
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	975
BsaHI	GRCGYC	2 cut(s)	98, 645
BsaI	GGTCTC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	4 cut(s)	735, 765, 1215, 1245
Bsc4I	CCNNNNNNNGG	2 cut(s)	1291, 1472
Bse118I	RCCGGY	2 cut(s)	52, 1399
Bse1I	ACTGG	6 cut(s)	235, 301, 506, 1090, 1370, 1545
Bse3DI	GCAATG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	975
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	732, 1326
BseGI	GGATG	5 cut(s)	568, 577, 613, 1072, 1219
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	2 cut(s)	1291, 1472
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	7 cut(s)	80, 194, 209, 617, 1371, 1587, 1628
BseNI	ACTGG	6 cut(s)	235, 301, 506, 1090, 1370, 1545
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	3 cut(s)	199, 373, 1653
Bsh1236I	CGCG	1 cut(s)	1416
BshFI	GGCC	2 cut(s)	1521, 1543
BshNI	GGYRCC	2 cut(s)	727, 803
BsiHKAI	GWGCWC	4 cut(s)	670, 1042, 1324, 1607
BsiSI	CCGG	4 cut(s)	53, 74, 560, 1400
BslFI	GGGAC	3 cut(s)	1167, 1295, 1382
BslI	CCNNNNNNNGG	2 cut(s)	1291, 1472
BsmAI	GTCTC	3 cut(s)	152, 622, 652
BsmBI	CGTCTC	1 cut(s)	652
BsmFI	GGGAC	3 cut(s)	1167, 1295, 1382
BsmI	GAATGC	2 cut(s)	136, 929
BsnI	GGCC	2 cut(s)	1521, 1543
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	6 cut(s)	670, 949, 1042, 1324, 1467, 1607
Bsp13I	TCCGGA	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	612
Bsp1720I	GCTNAGC	2 cut(s)	195, 1357
BspACI	CCGC	3 cut(s)	56, 261, 342
BspANI	GGCC	2 cut(s)	1521, 1543
BspCNI	CTCAG	7 cut(s)	79, 193, 208, 618, 1370, 1586, 1629
BspEI	TCCGGA	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	1416
BspLI	GGNNCC	7 cut(s)	308, 379, 504, 729, 805, 1283, 1404
BspPI	GGATC	7 cut(s)	497, 510, 551, 830, 1134, 1255, 1339
BspT107I	GGYRCC	2 cut(s)	727, 803
BspTI	CTTAAG	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	924
BsrFI	RCCGGY	2 cut(s)	52, 1399
BsrGI	TGTACA	1 cut(s)	612
BsrI	ACTGG	6 cut(s)	235, 301, 506, 1090, 1370, 1545
BssAI	RCCGGY	2 cut(s)	52, 1399
BssNI	GRCGYC	2 cut(s)	98, 645
Bst2UI	CCWGG	2 cut(s)	732, 1326
Bst4CI	ACNGT	7 cut(s)	175, 619, 689, 704, 961, 1241, 1269
Bst6I	CTCTTC	2 cut(s)	961, 1398
BstACI	GRCGYC	2 cut(s)	98, 645
BstAFI	CTTAAG	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	1320
BstF5I	GGATG	5 cut(s)	568, 577, 613, 1072, 1219
BstFNI	CGCG	1 cut(s)	1416
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 316
BstMAI	GTCTC	3 cut(s)	152, 622, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	953, 981, 1353
BstNI	CCWGG	2 cut(s)	732, 1326
BstNSI	RCATGY	1 cut(s)	1232
BstSCI	CCNGG	3 cut(s)	73, 730, 1324
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	1 cut(s)	1416
BstV1I	GCAGC	3 cut(s)	199, 373, 1653
BstV2I	GAAGAC	2 cut(s)	39, 442
BstX2I	RGATCY	4 cut(s)	502, 835, 1331, 1530
BstYI	RGATCY	4 cut(s)	502, 835, 1331, 1530
BsuRI	GGCC	2 cut(s)	1521, 1543
BtgZI	GCGATG	1 cut(s)	1431
BtsCI	GGATG	5 cut(s)	568, 577, 613, 1072, 1219
BtsIMutI	CAGTG	6 cut(s)	623, 807, 1363, 1552, 1634, 1660
Cac8I	GCNNGC	1 cut(s)	1320
CfoI	GCGC	2 cut(s)	34, 316
Cfr10I	RCCGGY	2 cut(s)	52, 1399
Cfr13I	GGNCC	2 cut(s)	1282, 1542
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	234, 357, 613, 1075, 1237
CviAII	CATG	6 cut(s)	164, 548, 578, 761, 1229, 1234
CviQI	GTAC	5 cut(s)	234, 357, 613, 1075, 1237
Eam1104I	CTCTTC	2 cut(s)	961, 1398
EarI	CTCTTC	2 cut(s)	961, 1398
Ecl136II	GAGCTC	1 cut(s)	1322
Eco24I	GRGCYC	2 cut(s)	1324, 1467
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	1282
Eco53kI	GAGCTC	1 cut(s)	1322
Eco57I	CTGAAG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	1322
EcoO109I	RGGNCCY	1 cut(s)	1282
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	730, 1324
EcoRV	GATATC	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	1324, 1467
Esp3I	CGTCTC	1 cut(s)	652
FaeI	CATG	6 cut(s)	167, 551, 581, 764, 1232, 1237
FaqI	GGGAC	3 cut(s)	1167, 1295, 1382
FatI	CATG	6 cut(s)	163, 547, 577, 760, 1228, 1233
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	4 cut(s)	57, 213, 387, 1642
FokI	GGATG	5 cut(s)	575, 584, 620, 1079, 1226
FriOI	GRGCYC	2 cut(s)	1324, 1467
Fsp4HI	GCNGC	4 cut(s)	57, 213, 387, 1642
FspBI	CTAG	5 cut(s)	255, 290, 659, 714, 1010
GlaI	GCGC	2 cut(s)	33, 315
GluI	GCNGC	4 cut(s)	57, 213, 387, 1642
GsuI	CTGGAG	3 cut(s)	753, 1107, 1308
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	1521, 1543
HapII	CCGG	4 cut(s)	53, 74, 560, 1400
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	34, 316
Hin1I	GRCGYC	2 cut(s)	98, 645
Hin1II	CATG	6 cut(s)	167, 551, 581, 764, 1232, 1237
Hin6I	GCGC	2 cut(s)	32, 314
HinP1I	GCGC	2 cut(s)	32, 314
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	3 cut(s)	116, 1609, 1629
HinfI	GANTC	6 cut(s)	61, 223, 812, 1187, 1493, 1550
HpaII	CCGG	4 cut(s)	53, 74, 560, 1400
HphI	GGTGA	6 cut(s)	42, 749, 1103, 1160, 1194, 1425
Hpy166II	GTNNAC	5 cut(s)	613, 615, 856, 1456, 1485
Hpy188I	TCNGA	4 cut(s)	1131, 1213, 1555, 1576
Hpy188III	TCNNGA	9 cut(s)	94, 366, 560, 1221, 1259, 1514, 1534, 1600, 1615
Hpy8I	GTNNAC	5 cut(s)	613, 615, 856, 1456, 1485
Hpy99I	CGWCG	2 cut(s)	46, 244
HpyAV	CCTTC	5 cut(s)	98, 161, 228, 391, 1511
HpyCH4III	ACNGT	7 cut(s)	175, 619, 689, 704, 961, 1241, 1269
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	4 cut(s)	673, 711, 929, 1410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	953, 981, 1353
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	2 cut(s)	98, 645
Hsp92II	CATG	6 cut(s)	167, 551, 581, 764, 1232, 1237
HspAI	GCGC	2 cut(s)	32, 314
Kpn2I	TCCGGA	1 cut(s)	559
LmnI	GCTCC	6 cut(s)	220, 306, 383, 743, 1327, 1408
Lsp1109I	GCAGC	3 cut(s)	199, 373, 1653
LweI	GCATC	2 cut(s)	454, 553
MaeI	CTAG	5 cut(s)	255, 290, 659, 714, 1010
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	8 cut(s)	175, 184, 479, 636, 1200, 1269, 1431, 1501
MboII	GAAGA	8 cut(s)	30, 39, 442, 802, 971, 978, 1106, 1385
MfeI	CAATTG	1 cut(s)	1192
MflI	RGATCY	4 cut(s)	502, 835, 1331, 1530
MhlI	GDGCHC	6 cut(s)	670, 949, 1042, 1324, 1467, 1607
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	4 cut(s)	251, 307, 943, 1361
MroI	TCCGGA	1 cut(s)	559
MseI	TTAA	4 cut(s)	81, 201, 918, 998
MslI	CAYNNNNRTG	2 cut(s)	765, 1382
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	4 cut(s)	53, 74, 560, 1400
MspR9I	CCNGG	3 cut(s)	75, 732, 1326
MunI	CAATTG	1 cut(s)	1192
Mva1269I	GAATGC	2 cut(s)	136, 929
MvaI	CCWGG	2 cut(s)	732, 1326
MvnI	CGCG	1 cut(s)	1416
MwoI	GCNNNNNNNGC	3 cut(s)	953, 981, 1353
NciI	CCSGG	1 cut(s)	75
NlaIII	CATG	6 cut(s)	167, 551, 581, 764, 1232, 1237
NlaIV	GGNNCC	7 cut(s)	308, 379, 504, 729, 805, 1283, 1404
NmuCI	GTSAC	3 cut(s)	479, 1200, 1431
NspI	RCATGY	1 cut(s)	1232
PctI	GAATGC	2 cut(s)	136, 929
PfeI	GAWTC	5 cut(s)	61, 812, 1187, 1493, 1550
PflFI	GACNNNGTC	1 cut(s)	1373
PfoI	TCCNGGA	1 cut(s)	1324
PkrI	GCNGC	4 cut(s)	58, 214, 388, 1643
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	1282
PsiI	TTATAA	1 cut(s)	678
Psp124BI	GAGCTC	1 cut(s)	1324
Psp5II	RGGWCCY	1 cut(s)	1282
Psp6I	CCWGG	2 cut(s)	730, 1324
PspGI	CCWGG	2 cut(s)	730, 1324
PspN4I	GGNNCC	7 cut(s)	308, 379, 504, 729, 805, 1283, 1404
PspPI	GGNCC	2 cut(s)	1282, 1542
PspPPI	RGGWCCY	1 cut(s)	1282
PsuI	RGATCY	4 cut(s)	502, 835, 1331, 1530
PsyI	GACNNNGTC	1 cut(s)	1373
RsaI	GTAC	5 cut(s)	235, 358, 614, 1076, 1238
RsaNI	GTAC	5 cut(s)	234, 357, 613, 1075, 1237
RseI	CAYNNNNRTG	2 cut(s)	765, 1382
SacI	GAGCTC	1 cut(s)	1324
SaqAI	TTAA	4 cut(s)	81, 201, 918, 998
SatI	GCNGC	4 cut(s)	57, 213, 387, 1642
Sau96I	GGNCC	2 cut(s)	1282, 1542
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	3 cut(s)	75, 732, 1326
SduI	GDGCHC	6 cut(s)	670, 949, 1042, 1324, 1467, 1607
SfaNI	GCATC	2 cut(s)	454, 553
SfcI	CTRYAG	1 cut(s)	189
SgrAI	CRCCGGYG	1 cut(s)	52
SinI	GGWCC	1 cut(s)	1282
SmiMI	CAYNNNNRTG	2 cut(s)	765, 1382
SmlI	CTYRAG	3 cut(s)	200, 1286, 1600
SmoI	CTYRAG	3 cut(s)	200, 1286, 1600
SpeI	ACTAGT	1 cut(s)	713
SsiI	CCGC	3 cut(s)	56, 261, 342
SspMI	CTAG	5 cut(s)	255, 290, 659, 714, 1010
SstI	GAGCTC	1 cut(s)	1324
StyD4I	CCNGG	3 cut(s)	73, 730, 1324
TaaI	ACNGT	7 cut(s)	175, 619, 689, 704, 961, 1241, 1269
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	221, 407, 1513
TatI	WGTACW	3 cut(s)	356, 612, 1074
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	5 cut(s)	61, 812, 1187, 1493, 1550
Tru1I	TTAA	4 cut(s)	81, 201, 918, 998
Tru9I	TTAA	4 cut(s)	81, 201, 918, 998
TscAI	CASTG	6 cut(s)	630, 814, 1370, 1552, 1641, 1660
TseFI	GTSAC	3 cut(s)	479, 1200, 1431
TseI	GCWGC	3 cut(s)	212, 386, 1641
Tsp45I	GTSAC	3 cut(s)	479, 1200, 1431
TspDTI	ATGAA	2 cut(s)	20, 143
TspRI	CASTG	6 cut(s)	630, 814, 1370, 1552, 1641, 1660
Tth111I	GACNNNGTC	1 cut(s)	1373
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	1282
XapI	RAATTY	2 cut(s)	421, 598
XceI	RCATGY	1 cut(s)	1232
XspI	CTAG	5 cut(s)	255, 290, 659, 714, 1010
ZraI	GACGTC	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.