Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011071

Physical Location & Seq

Genomic Coordinates Forward (+)

7941659 .. 7947541

Gene Structure 5883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

ATGGGCGATCTTAGGCCTCGGTCGCCTGAGCCAAACGGCGCCGTTTTGGAGGAGAGGCCGACCTCGTCTTCCTCGTCCGTGTTTTCAATTTCAACCAATCAGAGGGGGGGCGTTTCCGCCGAGTACTGGCGGAGAGCGGAGGAGGCGACGCAGGGGGTTATAGCTCAGGTCCAGCCTACTCACGTCTCCGAGCGGAGAAGGAAGGCCGTCATTGATTACGTCCAGAGGCTCATTGGAGGTTGTATTGGTTGCGAGGTGTTCCCGTTTGGATCAGTACCTCTGAAGACGTATCTGCCGGATGGAGATATTGATCTGACTGCTTTTGGTGGTCTAAATATTGAGGAGTCACTGGCCAATGATGTCTGTGCTGTTCTTGAAAGGGAAGATCACAATATGGCTGCTGAGTTTATGGTGAAGGATGTGCAGTTAATTCGGGCTGAGGTTAAGCTTGTAAAGTGCCTTGTGCAAAATATTGTGGTTGATATATCCTTCAATCAGTTAGGAGGGCTATGTACGTTATGCTTTCTTGAGCAGGTTGATCGCCTCATTGGCAAAGATCATCTCTTTAAACGTAGTATCATACTGATTAAGGCTTGGTGCTATTATGAGAGTCGAATTCTTGGTGCCCATCACGGTTTGATATCTACATATGGTTTGGAGACCTTAGTTCTTTTTATCTTCCATCTATTCCATACATCTCTGAATGGTCCTCTAGCGGTCCTGTATAAATTCTTGGACTACTTCAGTAAATTTGATTGGGACAACTATTGTATCAGCTTGAATGGTCCAGTTCGCATATCCTCACTTCCTGAACTCTTGGCTGAGATGCCAGATAATGGTGGGGGTGATCTATTGCTCAGTAGTGAATTTCTCAGGAGTTGTGTGGATAGGTTCTCAGTTCCTTCAAGGGGATATGAGACAAATTATAGAACTTTCCAGCCAAAGCATCTTAATATAGTTGATCCACTTAAAGAAAATAACAACCTTGGCAGAAGTGTGAGTAAAGGAAACTTTTACCGAATAAGGAGCGCTTTCACATATGGTGCTCGAAAACTAGGGCGCATCCTTTCCCAGCCAGAAGAGAACATTGATGATGAGATTAGAAAGTTCTTCTCAAACACATTGGACAGGCATGGAAGTGGACAGAGGCCGGATGTCCAAGATCCTATTCCATTATCCAGATATGATGGGTTTGGTTCTGCATTGGGTTCAGAGTTGCAAGAAGATAAAGCAGTTTATGAATCTGAATCTGCTTATTCAACTGGCTTGGTTGGGGATTCTGGGTTAAATCATGAGGGATCTTGGGATGGTGGAGATACAAATATTAATGTACCTGGTCAAGTTACAAATGGTCCATCCAAAAGTGATGCAGAGTTAGTATCCCCAACAATGTTTCCGGAAATAGAGGGTTCCTCAAACGGAATTGCTGTTTCAGAGTGCCGCCTAGTTGGGGATGCAAAAGACCTAGCTACCTCCAGATTTCATGACCTTACAATTTCAAATGATGCTCAGAAACCATCCCCGTCCAAAGGTGAGATGAGTATGTTTCCTTTGTGTAAAACACAACTTGCACCTCATCTTTATTTCTCTCACTCATCAATGGGAAATGGGAACGTTAGTAATGGAGATGAAGATCACGAACTGCCAGAAAGCTTTGGATCAGCTGAGAATGGGGTTGGTAACCAGGATGAGAATCAATCAGCTTGTAATCAGGAGTCTTTGGCTCCTGTTGGACAAAAGCACCAACTTTCACGCTTGCATTCCATTGTGGGTTCATCTGAAGACTTTTATCCTAGTTATTCTGGTTATCGGATGCCAATTAGCACTACTGGAAGTCCTGAAACTTCTAACCCTTTGTCTGATCTCAGTGGGGAATATGATAGTCACTTACATAACCTACGTTATGGCCGTTCATGCTATGCATACGAGCTCAATGCAGTCCATCATCCCGTGCAGCCTCCAATGCCCTCACAGTACCAGAGAAGTAAGTCATGGGATGTAAGTCGACAGTCTGTGCAGCTCAGACAGAATGCATTTTCACCAATGAGTCCCAATGGTGTTGTCCCTAGACAAGCATTTTACCATTTGAACCCACCAATGCTACCTAATGGTGCTGGGTTTGGTATGGAGGAGATGCCAAAACCACGAGGAACTGGAACATACTTTCCCAATACGAACCATTACAGAGATAGGCCCATGACAACAAGGGGAAGAAATCAAGCACCAGTGAGGGCTCCTCGTAACAATGGCCATGCCATGATACCACCTCCAGAAAATAATTTTCCTGACAGAAACAGTCGTGAGCTATCACAAGCCCAAATGCCTCTTCAAAAAGGTGGGGGAAAGTTTGGTTCTCCAGATAGCCCCACCAACTCCCCTCGAATGAAAGCATATCCCAATGCCAATGGGTCAATACATCCTTCTGATCGAATTGTAGAATTTGGGTCAGTTGAGCATGTGCCATTAGAGGCAACTCCCAGTGGCAGGCAAACAAACTCGGGATCATCATCCAGTCAAAATTCCAGTGTTGGCCAAGCCTCAACAAACTCGGAATTGGGTACAGATCAAGATAGGATTTCTGTGCAGTCATACCGTTTGAAAGATGAAGATGATTTCCCACCGTTATCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0042221 GO:0045013 GO:0045892 GO:0045934 GO:0045990 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061984 GO:0061985 GO:0065007 GO:0070887 GO:0071496 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

877

Amino Acids

96.61

Weight (kDa)

5.62

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	51 - 170	3e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	183 - 375	1.7e-99	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37160 AT2G37160 AT3G53390
fragaria_vesca	FvH4_6g15710 FvH4_6g15710
malus_domestica	MD04G1099900.v1.1 MD12G1120000.v1.1
prunus_persica	Prupe.6G238200_v2.0.a1
pyrus_communis	pycom04g09500 pycom12g11890
rosa_chinensis	RchiOBHm_Chr3g0469411
rosa_laevigata	RLG00000024351
rosa_multiflora	Rmu_sc0005274.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411910
rosa_rugosa	Rorug03G0101600
rosa_samantha	Rh3AG150600 Rh3BG174300 Rh3CG165300 Rh3DG201100
rosa_wichuraiana	Rw3G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AccB1I	GGYRCC	2 cut(s)	38, 623
AccB7I	CCANNNNNTGG	1 cut(s)	836
AccBSI	CCGCTC	2 cut(s)	137, 193
AccI	GTMKAC	1 cut(s)	2005
AccIII	TCCGGA	1 cut(s)	1396
AciI	CCGC	6 cut(s)	117, 130, 137, 193, 716, 1441
AclI	AACGTT	1 cut(s)	1614
AclWI	GGATC	6 cut(s)	277, 956, 1157, 1306, 1666, 2509
AcoI	YGGCCR	4 cut(s)	351, 1906, 2248, 2530
AcsI	RAATTY	6 cut(s)	615, 728, 749, 866, 2438, 2518
AcuI	CTGAAG	3 cut(s)	302, 727, 1800
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	6 cut(s)	125, 276, 514, 1332, 1976, 2560
AfeI	AGCGCT	1 cut(s)	1030
AfiI	CCNNNNNNNGG	7 cut(s)	102, 126, 836, 908, 1450, 1529, 2484
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	1333, 1683
AjuI	GAANNNNNNNTTGG	4 cut(s)	1152, 1184, 2310, 2342
AloI	GAACNNNNNNTCC	2 cut(s)	2149, 2181
Alw21I	GWGCWC	2 cut(s)	1048, 1932
Alw26I	GTCTC	3 cut(s)	190, 653, 911
AlwI	GGATC	6 cut(s)	277, 956, 1157, 1306, 1666, 2509
Ama87I	CYCGRG	1 cut(s)	2497
Aor13HI	TCCGGA	1 cut(s)	1396
Aor51HI	AGCGCT	1 cut(s)	1030
AoxI	GGCC	9 cut(s)	14, 56, 204, 351, 1148, 1906, 2192, 2248, 2530
ApeKI	GCWGC	3 cut(s)	398, 1954, 2017
ApoI	RAATTY	6 cut(s)	615, 728, 749, 866, 2438, 2518
AseI	ATTAAT	1 cut(s)	1326
AspLEI	GCGC	3 cut(s)	41, 1031, 1062
AspS9I	GGNCC	6 cut(s)	169, 707, 718, 785, 1352, 2193
AsuHPI	GGTGA	4 cut(s)	424, 857, 1544, 2031
AvaI	CYCGRG	1 cut(s)	2497
AvaII	GGWCC	5 cut(s)	169, 707, 718, 785, 1352
BaeGI	GKGCMC	1 cut(s)	628
BaeI	ACNNNNGTAYC	2 cut(s)	754, 787
BalI	TGGCCA	3 cut(s)	353, 2250, 2532
BanI	GGYRCC	2 cut(s)	38, 623
BanII	GRGCYC	2 cut(s)	1932, 2236
BauI	CACGAG	1 cut(s)	2145
BbsI	GAAGAC	3 cut(s)	60, 290, 1788
Bbv12I	GWGCWC	2 cut(s)	1048, 1932
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	385, 1966, 2029
BccI	CCATC	8 cut(s)	293, 636, 690, 1181, 1301, 1363, 1525, 1950
BceAI	ACGGC	4 cut(s)	26, 52, 191, 1893
BcgI	CGANNNNNNTGC	6 cut(s)	413, 447, 521, 555, 1916, 1950
BciT130I	CCWGG	2 cut(s)	1335, 1685
BciVI	GTATCC	1 cut(s)	1390
BcoDI	GTCTC	3 cut(s)	190, 653, 911
BfaI	CTAG	6 cut(s)	713, 1055, 1445, 1466, 1794, 2067
BfoI	RGCGCY	2 cut(s)	42, 1032
BfuAI	ACCTGC	1 cut(s)	523
BfuI	GTATCC	1 cut(s)	1390
BglI	GCCNNNNNGGC	1 cut(s)	549
BisI	GCNGC	4 cut(s)	399, 1441, 1955, 2018
BlsI	GCNGC	4 cut(s)	400, 1442, 1956, 2019
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	1335, 1685
Bme18I	GGWCC	5 cut(s)	169, 707, 718, 785, 1352
BmeT110I	CYCGRG	1 cut(s)	2497
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	6 cut(s)	169, 707, 718, 785, 1352, 2193
BmiI	GGNNCC	5 cut(s)	40, 625, 1411, 1725, 2235
BmrFI	CCNGG	2 cut(s)	1335, 1685
BmrI	ACTGGG	1 cut(s)	2472
BmsI	GCATC	8 cut(s)	816, 955, 1071, 1357, 1444, 1495, 1803, 2124
BmuI	ACTGGG	1 cut(s)	2472
BpiI	GAAGAC	3 cut(s)	60, 290, 1788
BplI	GAGNNNNNCTC	4 cut(s)	1397, 1429, 2221, 2253
BpmI	CTGGAG	3 cut(s)	1459, 2253, 2340
Bpu10I	CCTNAGC	3 cut(s)	27, 165, 438
BpuEI	CTTGAG	1 cut(s)	548
BsaBI	GATNNNNATC	4 cut(s)	309, 1632, 1692, 2506
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	17, 985
BsaWI	WCCGGW	1 cut(s)	1396
Bsc4I	CCNNNNNNNGG	7 cut(s)	102, 126, 836, 908, 1450, 1529, 2484
Bse8I	GATNNNNATC	4 cut(s)	309, 1632, 1692, 2506
BseAI	TCCGGA	1 cut(s)	1396
BseBI	CCWGG	2 cut(s)	1335, 1685
BseDI	CCNNGG	2 cut(s)	17, 985
BseJI	GATNNNNATC	4 cut(s)	309, 1632, 1692, 2506
BseLI	CCNNNNNNNGG	7 cut(s)	102, 126, 836, 908, 1450, 1529, 2484
BseRI	GAGGAG	5 cut(s)	65, 155, 356, 2144, 2226
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	385, 1966, 2029
BseYI	CCCAGC	2 cut(s)	1071, 2114
BsgI	GTGCAG	4 cut(s)	443, 1973, 2036, 2603
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	9 cut(s)	16, 58, 206, 353, 1150, 1908, 2194, 2250, 2532
BshNI	GGYRCC	2 cut(s)	38, 623
BsiEI	CGRYCG	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	1048, 1932
BsiHKCI	CYCGRG	1 cut(s)	2497
BsiSI	CCGG	3 cut(s)	296, 1151, 1397
BslFI	GGGAC	3 cut(s)	773, 2034, 2048
BslI	CCNNNNNNNGG	7 cut(s)	102, 126, 836, 908, 1450, 1529, 2484
BsmAI	GTCTC	3 cut(s)	190, 653, 911
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	3 cut(s)	773, 2034, 2048
BsmI	GAATGC	2 cut(s)	1759, 2035
BsnI	GGCC	9 cut(s)	16, 58, 206, 353, 1150, 1908, 2194, 2250, 2532
Bso31I	GGTCTC	1 cut(s)	653
BsoBI	CYCGRG	1 cut(s)	2497
Bsp1286I	GDGCHC	4 cut(s)	628, 1048, 1932, 2236
Bsp13I	TCCGGA	1 cut(s)	1396
BspACI	CCGC	6 cut(s)	117, 130, 137, 193, 716, 1441
BspANI	GGCC	9 cut(s)	16, 58, 206, 353, 1150, 1908, 2194, 2250, 2532
BspEI	TCCGGA	1 cut(s)	1396
BspHI	TCATGA	2 cut(s)	1291, 1483
BspLI	GGNNCC	5 cut(s)	40, 625, 1411, 1725, 2235
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	6 cut(s)	277, 956, 1157, 1306, 1666, 2509
BspT107I	GGYRCC	2 cut(s)	38, 623
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	2 cut(s)	137, 193
BssECI	CCNNGG	2 cut(s)	17, 985
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	2145
BssT1I	CCWWGG	1 cut(s)	985
Bst2BI	CACGAG	1 cut(s)	2145
Bst2UI	CCWGG	2 cut(s)	1335, 1685
Bst4CI	ACNGT	6 cut(s)	635, 1974, 2010, 2297, 2594, 2622
Bst6I	CTCTTC	2 cut(s)	1074, 2331
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	1757, 2486
BstEII	GGTNACC	1 cut(s)	1679
BstH2I	RGCGCY	2 cut(s)	42, 1032
BstHHI	GCGC	3 cut(s)	41, 1031, 1062
BstMAI	GTCTC	3 cut(s)	190, 653, 911
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 143, 549, 1914, 1963
BstNI	CCWGG	2 cut(s)	1335, 1685
BstNSI	RCATGY	1 cut(s)	2459
BstPI	GGTNACC	1 cut(s)	1679
BstSCI	CCNGG	2 cut(s)	1333, 1683
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	3 cut(s)	385, 1966, 2029
BstV2I	GAAGAC	3 cut(s)	60, 290, 1788
BstX2I	RGATCY	2 cut(s)	1162, 1298
BstYI	RGATCY	2 cut(s)	1162, 1298
BsuI	GTATCC	1 cut(s)	1390
BsuRI	GGCC	9 cut(s)	16, 58, 206, 353, 1150, 1908, 2194, 2250, 2532
BtrI	CACGTC	1 cut(s)	184
BtsIMutI	CAGTG	5 cut(s)	347, 1873, 2232, 2485, 2530
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	1757, 2486
CciI	TCATGA	2 cut(s)	1291, 1483
CfoI	GCGC	3 cut(s)	41, 1031, 1062
Cfr13I	GGNCC	6 cut(s)	169, 707, 718, 785, 1352, 2193
CseI	GACGC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	1333
Csp6I	GTAC	6 cut(s)	124, 275, 513, 1331, 1975, 2559
CviAII	CATG	9 cut(s)	1133, 1292, 1484, 1914, 1992, 2197, 2252, 2257, 2456
CviQI	GTAC	6 cut(s)	124, 275, 513, 1331, 1975, 2559
DinI	GGCGCC	1 cut(s)	40
DraI	TTTAAA	1 cut(s)	568
EaeI	YGGCCR	4 cut(s)	351, 1906, 2248, 2530
Eam1104I	CTCTTC	2 cut(s)	1074, 2331
EarI	CTCTTC	2 cut(s)	1074, 2331
EciI	GGCGGA	2 cut(s)	106, 145
Ecl136II	GAGCTC	1 cut(s)	1930
Eco130I	CCWWGG	1 cut(s)	985
Eco147I	AGGCCT	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	1932, 2236
Eco31I	GGTCTC	1 cut(s)	653
Eco32I	GATATC	1 cut(s)	642
Eco47I	GGWCC	5 cut(s)	169, 707, 718, 785, 1352
Eco47III	AGCGCT	1 cut(s)	1030
Eco53kI	GAGCTC	1 cut(s)	1930
Eco57I	CTGAAG	3 cut(s)	302, 727, 1800
Eco88I	CYCGRG	1 cut(s)	2497
Eco91I	GGTNACC	1 cut(s)	1679
EcoICRI	GAGCTC	1 cut(s)	1930
EcoO65I	GGTNACC	1 cut(s)	1679
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	1333, 1683
EcoRV	GATATC	1 cut(s)	642
EcoT14I	CCWWGG	1 cut(s)	985
EcoT22I	ATGCAT	2 cut(s)	1924, 2035
EcoT38I	GRGCYC	2 cut(s)	1932, 2236
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	985
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	9 cut(s)	1136, 1295, 1487, 1917, 1995, 2200, 2255, 2260, 2459
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FaqI	GGGAC	3 cut(s)	773, 2034, 2048
FatI	CATG	9 cut(s)	1132, 1291, 1483, 1913, 1991, 2196, 2251, 2256, 2455
FauNDI	CATATG	2 cut(s)	649, 1039
FblI	GTMKAC	1 cut(s)	2005
Fnu4HI	GCNGC	4 cut(s)	399, 1441, 1955, 2018
FriOI	GRGCYC	2 cut(s)	1932, 2236
Fsp4HI	GCNGC	4 cut(s)	399, 1441, 1955, 2018
FspBI	CTAG	6 cut(s)	713, 1055, 1445, 1466, 1794, 2067
GlaI	GCGC	3 cut(s)	40, 1030, 1061
GluI	GCNGC	4 cut(s)	399, 1441, 1955, 2018
GsaI	CCCAGC	2 cut(s)	1075, 2118
GsuI	CTGGAG	3 cut(s)	1459, 2253, 2340
HaeII	RGCGCY	2 cut(s)	42, 1032
HaeIII	GGCC	9 cut(s)	16, 58, 206, 353, 1150, 1908, 2194, 2250, 2532
HapII	CCGG	3 cut(s)	296, 1151, 1397
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	3 cut(s)	41, 1031, 1062
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	9 cut(s)	1136, 1295, 1487, 1917, 1995, 2200, 2255, 2260, 2459
Hin6I	GCGC	3 cut(s)	39, 1029, 1060
HinP1I	GCGC	3 cut(s)	39, 1029, 1060
HincII	GTYRAC	1 cut(s)	2006
HindII	GTYRAC	1 cut(s)	2006
HindIII	AAGCTT	2 cut(s)	446, 1651
HinfI	GANTC	8 cut(s)	344, 610, 1241, 1247, 1277, 1693, 1715, 2047
HpaII	CCGG	3 cut(s)	296, 1151, 1397
HphI	GGTGA	4 cut(s)	424, 857, 1544, 2031
Hpy166II	GTNNAC	2 cut(s)	1142, 2006
Hpy8I	GTNNAC	2 cut(s)	1142, 2006
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	6 cut(s)	192, 196, 409, 499, 912, 2430
HpyCH4III	ACNGT	6 cut(s)	635, 1974, 2010, 2297, 2594, 2622
HpyCH4IV	ACGT	7 cut(s)	183, 219, 287, 515, 571, 1614, 1900
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 143, 549, 1914, 1963
HpySE526I	ACGT	7 cut(s)	183, 219, 287, 515, 571, 1614, 1900
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	9 cut(s)	1136, 1295, 1487, 1917, 1995, 2200, 2255, 2260, 2459
HspAI	GCGC	3 cut(s)	39, 1029, 1060
KasI	GGCGCC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	1396
LmnI	GCTCC	3 cut(s)	1026, 1729, 2239
Lsp1109I	GCAGC	3 cut(s)	385, 1966, 2029
LweI	GCATC	8 cut(s)	816, 955, 1071, 1357, 1444, 1495, 1803, 2124
MabI	ACCWGGT	1 cut(s)	1333
MaeI	CTAG	6 cut(s)	713, 1055, 1445, 1466, 1794, 2067
MaeII	ACGT	7 cut(s)	183, 219, 287, 515, 571, 1614, 1900
MaeIII	GTNAC	5 cut(s)	345, 1342, 1679, 1883, 2240
MbiI	CCGCTC	2 cut(s)	137, 193
MflI	RGATCY	2 cut(s)	1162, 1298
MhlI	GDGCHC	4 cut(s)	628, 1048, 1932, 2236
MlsI	TGGCCA	3 cut(s)	353, 2250, 2532
MluNI	TGGCCA	3 cut(s)	353, 2250, 2532
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	4 cut(s)	353, 619, 1724, 2056
MmeI	TCCRAC	1 cut(s)	1711
Mox20I	TGGCCA	3 cut(s)	353, 2250, 2532
Mph1103I	ATGCAT	2 cut(s)	1924, 2035
MroI	TCCGGA	1 cut(s)	1396
MscI	TGGCCA	3 cut(s)	353, 2250, 2532
MseI	TTAA	8 cut(s)	428, 444, 567, 588, 951, 969, 1286, 1326
MslI	CAYNNNNRTG	1 cut(s)	1137
Msp20I	TGGCCA	3 cut(s)	353, 2250, 2532
MspA1I	CMGCKG	1 cut(s)	1664
MspI	CCGG	3 cut(s)	296, 1151, 1397
MspR9I	CCNGG	2 cut(s)	1335, 1685
Mva1269I	GAATGC	2 cut(s)	1759, 2035
MvaI	CCWGG	2 cut(s)	1335, 1685
MwoI	GCNNNNNNNGC	5 cut(s)	22, 143, 549, 1914, 1963
NarI	GGCGCC	1 cut(s)	39
NdeI	CATATG	2 cut(s)	649, 1039
NlaIII	CATG	9 cut(s)	1136, 1295, 1487, 1917, 1995, 2200, 2255, 2260, 2459
NlaIV	GGNNCC	5 cut(s)	40, 625, 1411, 1725, 2235
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	2 cut(s)	345, 1883
NsiI	ATGCAT	2 cut(s)	1924, 2035
NspI	RCATGY	1 cut(s)	2459
PagI	TCATGA	2 cut(s)	1291, 1483
PceI	AGGCCT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	71, 1906
PctI	GAATGC	2 cut(s)	1759, 2035
PfeI	GAWTC	4 cut(s)	1241, 1247, 1277, 1693
PflFI	GACNNNGTC	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	836
PkrI	GCNGC	4 cut(s)	400, 1442, 1956, 2019
PleI	GAGTC	4 cut(s)	352, 618, 1723, 2055
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	4 cut(s)	352, 618, 1723, 2055
PshBI	ATTAAT	1 cut(s)	1326
Psp124BI	GAGCTC	1 cut(s)	1932
Psp1406I	AACGTT	1 cut(s)	1614
Psp6I	CCWGG	2 cut(s)	1333, 1683
PspEI	GGTNACC	1 cut(s)	1679
PspFI	CCCAGC	2 cut(s)	1071, 2114
PspGI	CCWGG	2 cut(s)	1333, 1683
PspN4I	GGNNCC	5 cut(s)	40, 625, 1411, 1725, 2235
PspPI	GGNCC	6 cut(s)	169, 707, 718, 785, 1352, 2193
PsuI	RGATCY	2 cut(s)	1162, 1298
PsyI	GACNNNGTC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	1664
RsaI	GTAC	6 cut(s)	125, 276, 514, 1332, 1976, 2560
RsaNI	GTAC	6 cut(s)	124, 275, 513, 1331, 1975, 2559
RseI	CAYNNNNRTG	1 cut(s)	1137
SacI	GAGCTC	1 cut(s)	1932
SalI	GTCGAC	1 cut(s)	2004
SaqAI	TTAA	8 cut(s)	428, 444, 567, 588, 951, 969, 1286, 1326
SatI	GCNGC	4 cut(s)	399, 1441, 1955, 2018
Sau96I	GGNCC	6 cut(s)	169, 707, 718, 785, 1352, 2193
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	4 cut(s)	353, 619, 1724, 2056
ScrFI	CCNGG	2 cut(s)	1335, 1685
SduI	GDGCHC	4 cut(s)	628, 1048, 1932, 2236
SexAI	ACCWGGT	1 cut(s)	1333
SfaNI	GCATC	8 cut(s)	816, 955, 1071, 1357, 1444, 1495, 1803, 2124
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	5 cut(s)	169, 707, 718, 785, 1352
SmiMI	CAYNNNNRTG	1 cut(s)	1137
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	6 cut(s)	117, 130, 137, 193, 716, 1441
SspDI	GGCGCC	1 cut(s)	38
SspI	AATATT	3 cut(s)	337, 472, 1324
SspMI	CTAG	6 cut(s)	713, 1055, 1445, 1466, 1794, 2067
SstI	GAGCTC	1 cut(s)	1932
StuI	AGGCCT	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	1333, 1683
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	6 cut(s)	635, 1974, 2010, 2297, 2594, 2622
TaiI	ACGT	7 cut(s)	186, 222, 290, 518, 574, 1617, 1903
TaqI	TCGA	5 cut(s)	613, 1048, 2005, 2380, 2428
TaqII	GACCGA	1 cut(s)	9
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	1443
TfiI	GAWTC	4 cut(s)	1241, 1247, 1277, 1693
Tru1I	TTAA	8 cut(s)	428, 444, 567, 588, 951, 969, 1286, 1326
Tru9I	TTAA	8 cut(s)	428, 444, 567, 588, 951, 969, 1286, 1326
TscAI	CASTG	5 cut(s)	354, 1873, 2232, 2485, 2530
TseFI	GTSAC	2 cut(s)	345, 1883
TseI	GCWGC	3 cut(s)	398, 1954, 2017
Tsp45I	GTSAC	2 cut(s)	345, 1883
TspDTI	ATGAA	7 cut(s)	1254, 1472, 1644, 1764, 1902, 2399, 2619
TspGWI	ACGGA	2 cut(s)	67, 1434
TspRI	CASTG	5 cut(s)	354, 1873, 2232, 2485, 2530
Tth111I	GACNNNGTC	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	5 cut(s)	169, 707, 718, 785, 1352
VspI	ATTAAT	1 cut(s)	1326
XapI	RAATTY	6 cut(s)	615, 728, 749, 866, 2438, 2518
XceI	RCATGY	1 cut(s)	2459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	2005
XspI	CTAG	6 cut(s)	713, 1055, 1445, 1466, 1794, 2067
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	1924, 2035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.