AT3G54290

Hemerythrin HHE cation binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020984
Physical Location & Seq
Reverse (-)
20104352 .. 20106215
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54290.1

Sequence Viewer

Length: 1053 bp
ATGGGAACCTGCTTCTCCAGCTCAACTAAATCCACGGCTGAGATCTCTCCCTTTGACCTCGTCGTCAAACCTCCTCCTCCTTCCGCCGCCGCCACCGCACCACCAACCCAACGAATCCCCACCGCGAAAACAGAAACATCGACGGTGAGCTTCACCGCAACAGTGAGATTATACGGACCACCTAACAGTCTAGTGACGTCGTATCTCCGTTTCGCTCTTCTCCACAAGAAAGTTCCGCTCCGTTTCGTTCCATCGGAAGACCAAAAACCGACGATTCAAGTCGGATCGGAGACTGTATCAGGTTCTCGAGAGGTTCTTCTCCGTTACATCGAGGATAAGTTCCCAGAGCCGCGTTTGATGATTTGGAAGTTTAATCTGGAAGGCTTCGACGAAGCGACTCCATTGATAGTGAAGATGATTTGGCTTCAGCATAGGAGTATGTTGTGGCATATGGAGAGGATGTTGAGATGGTCGGAGGATCTGGCGGCGCGTGGAGGTAAAAAAGCGGTGGATCCGTCTGTGGGAACACCGAAGATGGAGATTAGGAAATTTGCAAAGAGTTATACTCATTTACAGGAGCTTATGCTCGAACATGCTCAAATGGAAGAGAGAATCTTGTTCCCTGTTCTTGAATCTGTTGATCGAGGGATGTGTAAAAGTGCAAATGAAGAACATGGGAGAGAATTACCAATGATGAATGGTATCAAAGAAGATATCAAATCTATTGGAGTTTTGGATTCTGGGATTTGTTCAGAAGCTCTCTTTAGTCTTGCTTCTCGTTTCAAATCATTGCAGATGATGTGTAAAACACATTTTGAAGAGGAAGAGAAAGATTTATTGCCAATGGTGGAAGCTGCAGAAATGGGGAAAGAGAAGCAGAAGAAATTGATGAATCAAAGCTTAGAAGTTATGAGTGGGACTCATTCTAACTCGTTTGATTTCCTACTAGAAGGTCTCACTCCACAAGAAGCTATGCAGTATATTGACTTGCTCATGACATTTGGTGATCCAAATCTTATCTCATCTTTTCTCTGCTCTGATGTTGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemerythrin

Protein Analysis

350

Amino Acids

39.45

Weight (kDa)

5.73

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hemerythrin PF01814 136 - 283 8.4e-14 Hemerythrin HHE cation binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54290
malus_domestica MD07G1059000.v1.1 MD07G1059300.v1.1
prunus_persica Prupe.2G067800_v2.0.a1
pyrus_communis pycom07g04550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AatII GACGTC 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 238
AccII CGCG 3 cut(s) 125, 352, 490
AclWI GGATC 5 cut(s) 292, 486, 506, 519, 1001
AcsI RAATTY 1 cut(s) 548
AcuI CTGAAG 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 4 cut(s) 278, 632, 784, 818
AluBI AGCT 7 cut(s) 21, 150, 580, 758, 854, 900, 971
AluI AGCT 7 cut(s) 21, 150, 580, 758, 854, 900, 971
Alw26I GTCTC 2 cut(s) 284, 959
AlwI GGATC 5 cut(s) 292, 486, 506, 519, 1001
Ama87I CYCGRG 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 854
ApoI RAATTY 1 cut(s) 548
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 145, 157, 1016
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 841
BccI CCATC 3 cut(s) 259, 462, 529
BceAI ACGGC 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 284, 959
BfaI CTAG 2 cut(s) 191, 947
BfmI CTRYAG 1 cut(s) 855
BfuAI ACCTGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 42
BisI GCNGC 5 cut(s) 87, 90, 350, 486, 855
BlsI GCNGC 5 cut(s) 88, 91, 351, 487, 856
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 7, 513
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 4 cut(s) 550, 582, 904, 936
BsaBI GATNNNNATC 1 cut(s) 1011
BsaHI GRCGYC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 959
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 788
Bse8I GATNNNNATC 1 cut(s) 1011
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 465, 654
BseJI GATNNNNATC 1 cut(s) 1011
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMI GCAATG 1 cut(s) 788
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 63, 66
BseXI GCAGC 1 cut(s) 841
Bsh1236I CGCG 3 cut(s) 125, 352, 490
BsiHKCI CYCGRG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 2 cut(s) 284, 959
BsmFI GGGAC 1 cut(s) 931
Bso31I GGTCTC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 3 cut(s) 125, 352, 490
BspHI TCATGA 1 cut(s) 993
BspLI GGNNCC 2 cut(s) 7, 513
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 5 cut(s) 292, 486, 506, 519, 1001
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
BssNI GRCGYC 1 cut(s) 197
Bst4CI ACNGT 4 cut(s) 145, 163, 188, 295
Bst6I CTCTTC 4 cut(s) 222, 600, 813, 819
BstACI GRCGYC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 39, 901
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 465, 654
BstFNI CGCG 3 cut(s) 125, 352, 490
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 6 cut(s) 45, 287, 481, 514, 643, 1009
BstMAI GTCTC 2 cut(s) 284, 959
BstMBI GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 18, 95
BstNSI RCATGY 1 cut(s) 596
BstSFI CTRYAG 1 cut(s) 855
BstUI CGCG 3 cut(s) 125, 352, 490
BstV1I GCAGC 1 cut(s) 841
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 3 cut(s) 42, 478, 511
BstYI RGATCY 3 cut(s) 42, 478, 511
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 465, 654
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 993
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 176
CviAII CATG 3 cut(s) 593, 674, 994
DdeI CTNAG 2 cut(s) 39, 901
DpnI GATC 6 cut(s) 44, 286, 480, 513, 642, 1008
DpnII GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
Eam1104I CTCTTC 4 cut(s) 222, 600, 813, 819
EarI CTCTTC 4 cut(s) 222, 600, 813, 819
EciI GGCGGA 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 715
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 306
EcoRV GATATC 1 cut(s) 715
FaeI CATG 3 cut(s) 596, 677, 997
FaqI GGGAC 1 cut(s) 931
FatI CATG 3 cut(s) 592, 673, 993
FauNDI CATATG 1 cut(s) 450
Fnu4HI GCNGC 5 cut(s) 87, 90, 350, 486, 855
FokI GGATG 2 cut(s) 472, 661
Fsp4HI GCNGC 5 cut(s) 87, 90, 350, 486, 855
FspBI CTAG 2 cut(s) 191, 947
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 87, 90, 350, 486, 855
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 3 cut(s) 596, 677, 997
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 1 cut(s) 898
HinfI GANTC 8 cut(s) 114, 274, 397, 612, 632, 737, 892, 919
HphI GGTGA 3 cut(s) 145, 157, 1016
Hpy166II GTNNAC 1 cut(s) 1048
Hpy188I TCNGA 6 cut(s) 256, 284, 289, 475, 754, 1039
Hpy188III TCNNGA 5 cut(s) 306, 308, 377, 629, 994
Hpy8I GTNNAC 1 cut(s) 1048
Hpy99I CGWCG 5 cut(s) 65, 145, 202, 274, 392
HpyAV CCTTC 3 cut(s) 90, 374, 944
HpyCH4III ACNGT 4 cut(s) 145, 163, 188, 295
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 5 cut(s) 554, 662, 793, 857, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 95
HpyF3I CTNAG 2 cut(s) 39, 901
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 3 cut(s) 596, 677, 997
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 243, 577
LpnPI CCDG 9 cut(s) 22, 31, 285, 357, 362, 467, 560, 636, 726
Lsp1109I GCAGC 1 cut(s) 841
MaeI CTAG 2 cut(s) 191, 947
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 193, 323
MalI GATC 6 cut(s) 44, 286, 480, 513, 642, 1008
MbiI CCGCTC 1 cut(s) 238
MboI GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
MflI RGATCY 3 cut(s) 42, 478, 511
MluCI AATT 3 cut(s) 548, 683, 884
MlyI GAGTC 2 cut(s) 391, 913
MmeI TCCRAC 2 cut(s) 262, 453
MseI TTAA 1 cut(s) 372
MvnI CGCG 3 cut(s) 125, 352, 490
MwoI GCNNNNNNNGC 2 cut(s) 18, 95
NdeI CATATG 1 cut(s) 450
NdeII GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
NlaIII CATG 3 cut(s) 596, 677, 997
NlaIV GGNNCC 2 cut(s) 7, 513
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 306
PagI TCATGA 1 cut(s) 993
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 6 cut(s) 114, 274, 612, 632, 737, 892
PflFI GACNNNGTC 1 cut(s) 59
PkrI GCNGC 5 cut(s) 88, 91, 351, 487, 856
PleI GAGTC 2 cut(s) 391, 913
PpsI GAGTC 2 cut(s) 391, 913
PspN4I GGNNCC 2 cut(s) 7, 513
PspPI GGNCC 1 cut(s) 176
PstI CTGCAG 1 cut(s) 859
PsuI RGATCY 3 cut(s) 42, 478, 511
PsyI GACNNNGTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 5 cut(s) 87, 90, 350, 486, 855
Sau3AI GATC 6 cut(s) 42, 284, 478, 511, 640, 1006
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 2 cut(s) 391, 913
SfcI CTRYAG 1 cut(s) 855
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 176
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 3 cut(s) 548, 683, 884
SspMI CTAG 2 cut(s) 191, 947
TaaI ACNGT 4 cut(s) 145, 163, 188, 295
TaiI ACGT 1 cut(s) 200
TaqI TCGA 6 cut(s) 140, 307, 330, 387, 588, 643
TasI AATT 3 cut(s) 548, 683, 884
TauI GCSGC 4 cut(s) 89, 92, 352, 488
TfiI GAWTC 6 cut(s) 114, 274, 612, 632, 737, 892
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 854
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 681, 710, 905
TspGWI ACGGA 5 cut(s) 189, 197, 230, 311, 504
TspRI CASTG 1 cut(s) 168
Tth111I GACNNNGTC 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 176
XapI RAATTY 1 cut(s) 548
XceI RCATGY 1 cut(s) 596
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 2 cut(s) 191, 947
ZraI GACGTC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.