Prupe.2G067800_v2.0.a1

Hemerythrin HHE cation binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0020984
Physical Location & Seq
Forward (+)
9665698 .. 9669253
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G067800.1

Sequence Viewer

Length: 1029 bp
ATGGGAATCTGTTTCGGGAAGCGGAAGAAATCGACGGCGGAGATAGTGCCGCAAAACCAGCCGACAACAACCATCCGATTGTACGGCTCCCCAAGAAGCACCGCCTACATCCGAGTCGCCCTCAAATACAAGGCGGCAGCCGTCTCGCTCCGCTGCGTGGTCGACGACACATGCGGCGGTGACGACCACAACGCGAATGAAAATTTGGTTGTAGCCGTGGAGGTGGCCGGTTCATCATCACCCCAGACGGAGAGGGTTTCAGGGCCTCCCAGTACTCTGCTGCAGTTCATAGACACCAGATTCCCGCACCCGCCGCTTCTTCTTCAAATCCGCTCCCCCGAAACGACGTCGTTAGTGGCGGCGGTGGTTAAGCTGACTGAGCTGCAACATAGGAGCGTGACGTGGCACTTGGAGAGGTTGGTGAGGTGGGCGACGGATCTGTTGACACGTCAGAATAAACGCGGAGGAAGAGGAGGAGAGATTGATCCGACGGTGGGGACTGCGCGGATGGAGGTGAGGAAGTTGGGGAGGAGCTACACCCAGCTGTTGGAACTGATGTTGGAACACGCTCAGATGGAGGAGAGGCTCCTCTTCCCTATCTTCAACTTCGCTGATCCAATGATATGTAAGGCTGCAAATGAGGAACATGCAAGGGACCTACCCATCATGAATGGCATCAAAGAAGATATCAAATCCATTGAGGTTATAGACAATGGGAGCCCTGCCTACCAAGAAGCTCTTTCCAACTTTTCCAAGCGCCTTAAATCATTACAGGAGCGTTACAGACAACACTTTCTGGAGGAGGAGAGAGAATTATTACCCTATATGGAGGCAGCTGAGCTGAACAAAGAGCAGCAACAAAGATTATTGGACCAGTGTGTGGATGTGATGCAAGAAACACACTCACATAATTTGTTCATTTTTCTACTTCAAGGGCTCCTCCCTCATGAAGCCATGCACTACTTGGACTTGATCTCTATGTGCAGCAACAAAGAACGGACAGCTTCTATGCTTCAAATGATAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hemerythrin

Protein Analysis

343

Amino Acids

38.84

Weight (kDa)

6.43

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54290
malus_domestica MD07G1059000.v1.1 MD07G1059300.v1.1
prunus_persica Prupe.2G067800_v2.0.a1
pyrus_communis pycom07g04550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AccB7I CCANNNNNTGG 2 cut(s) 547, 880
AccBSI CCGCTC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 194, 462, 505
AclWI GGATC 3 cut(s) 444, 479, 608
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 2 cut(s) 83, 274
AfiI CCNNNNNNNGG 4 cut(s) 157, 494, 547, 880
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 4 cut(s) 326, 604, 932, 1016
AjiI CACGTC 2 cut(s) 402, 449
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 8 cut(s) 373, 382, 534, 544, 737, 836, 841, 1004
AluI AGCT 8 cut(s) 373, 382, 534, 544, 737, 836, 841, 1004
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 3 cut(s) 444, 479, 608
AoxI GGCC 2 cut(s) 225, 263
ApeKI GCWGC 8 cut(s) 137, 153, 280, 382, 632, 833, 853, 984
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 2 cut(s) 505, 759
AspS9I GGNCC 3 cut(s) 263, 655, 871
AsuHPI GGTGA 4 cut(s) 191, 231, 433, 526
AvaII GGWCC 2 cut(s) 655, 871
BanII GRGCYC 2 cut(s) 722, 939
BbvI GCAGC 8 cut(s) 140, 149, 267, 369, 619, 845, 865, 996
BccI CCATC 4 cut(s) 80, 502, 568, 671
BceAI ACGGC 4 cut(s) 51, 100, 125, 200
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 281
BfoI RGCGCY 1 cut(s) 760
BlpI GCTNAGC 1 cut(s) 837
BmcAI AGTACT 1 cut(s) 274
Bme18I GGWCC 2 cut(s) 655, 871
BmgBI CACGTC 2 cut(s) 402, 449
BmgT120I GGNCC 3 cut(s) 263, 655, 871
BmiI GGNNCC 5 cut(s) 88, 587, 656, 719, 938
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 684, 879
BmuI ACTGGG 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 818
Bpu1102I GCTNAGC 1 cut(s) 837
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 494, 547, 880
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 270, 874
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 4 cut(s) 72, 108, 513, 889
BseLI CCNNNNNNNGG 4 cut(s) 157, 494, 547, 880
BseMII CTCAG 3 cut(s) 369, 584, 828
BseNI ACTGG 2 cut(s) 270, 874
BseRI GAGGAG 8 cut(s) 486, 489, 544, 578, 593, 815, 818, 929
BseXI GCAGC 8 cut(s) 140, 149, 267, 369, 619, 845, 865, 996
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 1003
Bsh1236I CGCG 3 cut(s) 194, 462, 505
BshFI GGCC 2 cut(s) 227, 265
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 511, 668
BslI CCNNNNNNNGG 4 cut(s) 157, 494, 547, 880
BsmAI GTCTC 1 cut(s) 148
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 511, 668
BsnI GGCC 2 cut(s) 227, 265
Bsp1286I GDGCHC 2 cut(s) 722, 939
Bsp143I GATC 4 cut(s) 436, 484, 613, 972
Bsp1720I GCTNAGC 1 cut(s) 837
BspANI GGCC 2 cut(s) 227, 265
BspCNI CTCAG 3 cut(s) 370, 583, 829
BspFNI CGCG 3 cut(s) 194, 462, 505
BspHI TCATGA 2 cut(s) 666, 946
BspLI GGNNCC 5 cut(s) 88, 587, 656, 719, 938
BspMAI CTGCAG 1 cut(s) 285
BspPI GGATC 3 cut(s) 444, 479, 608
BsrBI CCGCTC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 2 cut(s) 270, 874
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 4 cut(s) 436, 484, 613, 972
BssNI GRCGYC 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 463, 596
BstACI GRCGYC 1 cut(s) 347
BstDEI CTNAG 3 cut(s) 378, 570, 837
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 72, 108, 513, 889
BstFNI CGCG 3 cut(s) 194, 462, 505
BstH2I RGCGCY 1 cut(s) 760
BstHHI GCGC 2 cut(s) 505, 759
BstKTI GATC 4 cut(s) 439, 487, 616, 975
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 4 cut(s) 436, 484, 613, 972
BstMWI GCNNNNNNNGC 3 cut(s) 58, 313, 379
BstNSI RCATGY 2 cut(s) 174, 650
BstSFI CTRYAG 1 cut(s) 281
BstUI CGCG 3 cut(s) 194, 462, 505
BstV1I GCAGC 8 cut(s) 140, 149, 267, 369, 619, 845, 865, 996
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 2 cut(s) 227, 265
BtgI CCRYGG 1 cut(s) 216
BtrI CACGTC 2 cut(s) 402, 449
BtsCI GGATG 4 cut(s) 72, 108, 513, 889
BtsIMutI CAGTG 1 cut(s) 881
CciI TCATGA 2 cut(s) 666, 946
CfoI GCGC 2 cut(s) 505, 759
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 263, 655, 871
Csp6I GTAC 2 cut(s) 82, 273
CviAII CATG 5 cut(s) 171, 647, 667, 947, 955
CviQI GTAC 2 cut(s) 82, 273
DdeI CTNAG 3 cut(s) 378, 570, 837
DpnI GATC 4 cut(s) 438, 486, 615, 974
DpnII GATC 4 cut(s) 436, 484, 613, 972
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 463, 596
EarI CTCTTC 2 cut(s) 463, 596
EciI GGCGGA 1 cut(s) 53
Eco24I GRGCYC 2 cut(s) 722, 939
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 2 cut(s) 655, 871
EcoO109I RGGNCCY 2 cut(s) 263, 655
EcoRV GATATC 1 cut(s) 688
EcoT38I GRGCYC 2 cut(s) 722, 939
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 5 cut(s) 174, 650, 670, 950, 958
FalI AAGNNNNNCTT 2 cut(s) 723, 755
FaqI GGGAC 2 cut(s) 511, 668
FatI CATG 5 cut(s) 170, 646, 666, 946, 954
FauI CCCGC 2 cut(s) 312, 318
FblI GTMKAC 1 cut(s) 162
FokI GGATG 4 cut(s) 59, 95, 520, 896
FriOI GRGCYC 2 cut(s) 722, 939
GlaI GCGC 2 cut(s) 504, 758
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 1 cut(s) 760
HaeIII GGCC 2 cut(s) 227, 265
HapII CCGG 1 cut(s) 228
HhaI GCGC 2 cut(s) 505, 759
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 5 cut(s) 174, 650, 670, 950, 958
Hin6I GCGC 2 cut(s) 503, 757
HinP1I GCGC 2 cut(s) 503, 757
HincII GTYRAC 2 cut(s) 163, 444
HindII GTYRAC 2 cut(s) 163, 444
HinfI GANTC 3 cut(s) 6, 114, 300
HpaII CCGG 1 cut(s) 228
HphI GGTGA 4 cut(s) 191, 231, 433, 526
Hpy166II GTNNAC 2 cut(s) 163, 444
Hpy188I TCNGA 5 cut(s) 77, 113, 453, 489, 573
Hpy188III TCNNGA 4 cut(s) 16, 667, 797, 947
Hpy8I GTNNAC 2 cut(s) 163, 444
Hpy99I CGWCG 6 cut(s) 37, 167, 349, 352, 436, 493
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 3 cut(s) 347, 401, 448
HpyCH4V TGCA 7 cut(s) 283, 385, 635, 650, 892, 958, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 313, 379
HpyF3I CTNAG 3 cut(s) 378, 570, 837
HpySE526I ACGT 3 cut(s) 347, 401, 448
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 5 cut(s) 174, 650, 670, 950, 958
HspAI GCGC 2 cut(s) 503, 757
Kzo9I GATC 4 cut(s) 436, 484, 613, 972
LmnI GCTCC 9 cut(s) 92, 153, 338, 393, 531, 591, 717, 775, 942
Lsp1109I GCAGC 8 cut(s) 140, 149, 267, 369, 619, 845, 865, 996
LweI GCATC 2 cut(s) 684, 879
MaeII ACGT 3 cut(s) 347, 401, 448
MaeIII GTNAC 3 cut(s) 179, 397, 779
MalI GATC 4 cut(s) 438, 486, 615, 974
MbiI CCGCTC 1 cut(s) 333
MboI GATC 4 cut(s) 436, 484, 613, 972
MboII GAAGA 7 cut(s) 37, 311, 314, 480, 583, 592, 695
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 722, 939
MluCI AATT 4 cut(s) 202, 812, 910, 1023
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 4 cut(s) 512, 528, 540, 768
MseI TTAA 2 cut(s) 369, 762
MspA1I CMGCKG 3 cut(s) 153, 544, 836
MspI CCGG 1 cut(s) 228
MvnI CGCG 3 cut(s) 194, 462, 505
MwoI GCNNNNNNNGC 3 cut(s) 58, 313, 379
NdeII GATC 4 cut(s) 436, 484, 613, 972
NlaIII CATG 5 cut(s) 174, 650, 670, 950, 958
NlaIV GGNNCC 5 cut(s) 88, 587, 656, 719, 938
NmuCI GTSAC 2 cut(s) 179, 397
NspI RCATGY 2 cut(s) 174, 650
PagI TCATGA 2 cut(s) 666, 946
PfeI GAWTC 2 cut(s) 6, 300
PflMI CCANNNNNTGG 2 cut(s) 547, 880
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 655
Psp5II RGGWCCY 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 540
PspN4I GGNNCC 5 cut(s) 88, 587, 656, 719, 938
PspPI GGNCC 3 cut(s) 263, 655, 871
PspPPI RGGWCCY 1 cut(s) 655
PstI CTGCAG 1 cut(s) 285
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 2 cut(s) 544, 836
RsaI GTAC 2 cut(s) 83, 274
RsaNI GTAC 2 cut(s) 82, 273
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 2 cut(s) 369, 762
Sau3AI GATC 4 cut(s) 436, 484, 613, 972
Sau96I GGNCC 3 cut(s) 263, 655, 871
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 123
SduI GDGCHC 2 cut(s) 722, 939
SfaNI GCATC 2 cut(s) 684, 879
SfcI CTRYAG 1 cut(s) 281
SinI GGWCC 2 cut(s) 655, 871
Sse9I AATT 4 cut(s) 202, 812, 910, 1023
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 3 cut(s) 350, 404, 451
TaqI TCGA 2 cut(s) 32, 162
TasI AATT 4 cut(s) 202, 812, 910, 1023
TatI WGTACW 1 cut(s) 272
TauI GCSGC 5 cut(s) 52, 137, 177, 316, 362
TfiI GAWTC 2 cut(s) 6, 300
Tru1I TTAA 2 cut(s) 369, 762
Tru9I TTAA 2 cut(s) 369, 762
TscAI CASTG 1 cut(s) 881
TseFI GTSAC 2 cut(s) 179, 397
TseI GCWGC 8 cut(s) 137, 153, 280, 382, 632, 833, 853, 984
Tsp45I GTSAC 2 cut(s) 179, 397
TspDTI ATGAA 6 cut(s) 213, 222, 277, 683, 907, 963
TspGWI ACGGA 3 cut(s) 263, 449, 1012
TspRI CASTG 1 cut(s) 881
Van91I CCANNNNNTGG 2 cut(s) 547, 880
VpaK11BI GGWCC 2 cut(s) 655, 871
XapI RAATTY 1 cut(s) 202
XceI RCATGY 2 cut(s) 174, 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 162
ZraI GACGTC 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.