AT3G54650

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20225730 .. 20229214
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G54650.1

Sequence Viewer

Length: 1782 bp
ATGCAACCTCAGCCGCATATTTCTCCGAACACCGCAACTGCCGCGATCTCAGCCGCGCTTGAATCTCAGCGCAGTAGAAAAAACCGAGGAAGTTACAATTGCGGTAGATGTGGTCAACCTAAGAAAGGCCATGTCTGTCTTTTAACTGCTCCACCTGATATTCCCACTACTCCGATCGCTTCTGAGCCAGTGAGCTGCATCTCCGCCGCCGCATCTTCTTCCCGTTCTACTGTCTTATCTTTAACAGCGGCGCCGTCATCGCGACAGACCTTCACTCACTTACGCCGAGCTTTATCGTTCGATGACGTCGATGCGCGTAATTCACTCGATGAATCCGATCTGGATGCTGCATCGATGGATCTGGATCTACAATTGGATACGGATATTGTTCAGCCTGGGAGGTTTCATGCGGTGGGTTTATGGGAGGTGCTTAAGCGGCTACCTCCGTCTAGTTTACTGATGGCGGCTAGGGTTTGCAAAGGATGGAGAGAGACATCGAGGAAGATGTGGAAAGCGGCTGAGGAGCTTCGGATTAGGGTTCCGGAGAGAGCTCAGATTGGATACATTGGATCCTTATTACAAAAATGTCCTCGACTTATTAGACTCTCACTTAAAATCGAGAGTGATTTTGACGCGACGACTCTGGCTTGCATTGCATTTTCTTGTCCTAACCTGGAGGTTTTGGAGATTACAACTTCGGGTGCAGCTGTCAATAGGATTTCTGGGGATGAGCTGAGTCGGTTTGTTGCTAATAAACGAGGACTAACAAGCCTTAAGATGGAAGGATGTTCCAATTTGGGAGGATTTTCCCTCTCTTCATCAAGCCTCTCCACTCTTTGGCTCTCGGATCTTCATTCTCTCTCAAAGATGATCTTCAACTGTCCAAATCTTACGGAAATATCACTTGAATTTTCTCGCCAAGAAGATGATTCAACTGATCTTGTAACAATGGTTGATGGTTTGGGAAGGACTTGCACTAGATTGCAGAACATCCATATAGCCTCTTTGAAGCTTTCACATACTGTTGTACTTTCTCTTACTGCTGTGAATTTCAGGTATTTGAGAATGCTCTCGCTAGTTCTTGGAATAAATATCACTGATGCATCTGTAGCTGCCATTTCCTCAGGTTACAAAAACCTTGAACTGCTTGATCTGAGTGGTTCCAGCATTACTGATACTGGCCTCGGGATGATCTGCGATGTCTTACCTGATACACTCTCAAAATTACTTGTTGCTCTTTGTCCCAACATTACATCAAGTGGCATTCAATTTGCTACTGCTCAATTGCCCCTTCTTGAGCTGATGGATTGTGGCATGACTGTCTCTGATCCCAACTCAGATAATCCGACCTTTGTAGAGAATCCAAGTCCACATAAAACACCAGGCTACAATCAAAAGATGTTTATCAAACATAAACGGCTGAAGAAACTTAGTTTGTGGGGATGCTCCAGTTTGGACGCTTTGTTCCTAAACTGCCCAGAGCTCATGGACTTGAACTTGAACTTATGCAGTAATTTGCATCCGGAGAGTCTGGTGCTACAATGTCCAAAGTTACAACTTGTGTACGCATCAGGATGTCAAGGCCTATTGACCGGAGCTATCCGAAAACAGGTTTCTGAAAACTTCTCGGCTGGTGAGAACCATATGCCACGGAAACGCTTGGCTGATGCATCTAAAAGGATTCAAGCTTTACCTTCATTATACCAAGAAACAAGGGAAGATGGTATTTATGCAGGGAAGAGAAGGAAGTTGGAGAAAGAAATGTGTACCATTATACATTAA

Protein Analysis

593

Amino Acids

64.77

Weight (kDa)

8.31

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015202)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54650
fragaria_vesca FvH4_2g22510
malus_domestica MD05G1205600.v1.1 MD10G1192800.v1.1
prunus_persica Prupe.8G232000_v2.0.a1
pyrus_communis pycom05g19170 pycom10g16630 pycom10g16640
rosa_chinensis RchiOBHm_Chr6g0289551
rosa_laevigata RLG00000012294
rosa_roxburghii Rroxscaffold_7G00177870
rosa_rugosa Rorug06G0204300
rosa_samantha Rh6AG316000 Rh6CG329000 Rh6DG314700
rosa_wichuraiana Rw6G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 250
AccB7I CCANNNNNTGG 1 cut(s) 837
AccII CGCG 5 cut(s) 44, 56, 262, 316, 635
AccIII TCCGGA 2 cut(s) 541, 1522
AclWI GGATC 6 cut(s) 366, 372, 564, 577, 855, 1322
AcsI RAATTY 2 cut(s) 908, 1048
AcuI CTGAAG 1 cut(s) 1442
AcyI GRCGYC 2 cut(s) 251, 306
AfaI GTAC 3 cut(s) 1029, 1565, 1768
AfiI CCNNNNNNNGG 4 cut(s) 125, 778, 837, 1609
AflII CTTAAG 2 cut(s) 431, 773
AjnI CCWGG 3 cut(s) 394, 672, 1381
AloI GAACNNNNNNTCC 2 cut(s) 1448, 1480
Alw21I GWGCWC 2 cut(s) 553, 1485
Alw26I GTCTC 2 cut(s) 485, 1327
AlwI GGATC 6 cut(s) 366, 372, 564, 577, 855, 1322
Ama87I CYCGRG 1 cut(s) 1184
Aor13HI TCCGGA 2 cut(s) 541, 1522
AoxI GGCC 3 cut(s) 127, 1180, 1582
ApeKI GCWGC 4 cut(s) 195, 347, 704, 1112
ApoI RAATTY 2 cut(s) 908, 1048
AspLEI GCGC 4 cut(s) 58, 72, 253, 316
AsuHPI GGTGA 1 cut(s) 1646
AvaI CYCGRG 1 cut(s) 1184
AxyI CCTNAGG 1 cut(s) 1123
BamHI GGATCC 1 cut(s) 569
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 2 cut(s) 553, 1485
Bbv12I GWGCWC 2 cut(s) 553, 1485
BbvCI CCTCAGC 2 cut(s) 9, 519
BbvI GCAGC 4 cut(s) 182, 334, 716, 1099
BccI CCATC 7 cut(s) 349, 454, 477, 772, 950, 1297, 1715
BceAI ACGGC 2 cut(s) 238, 1433
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BciT130I CCWGG 3 cut(s) 396, 674, 1383
BciVI GTATCC 2 cut(s) 370, 554
BcoDI GTCTC 2 cut(s) 485, 1327
BfaI CTAG 4 cut(s) 450, 468, 978, 1076
BfmI CTRYAG 1 cut(s) 1107
BfoI RGCGCY 1 cut(s) 254
BfrI CTTAAG 2 cut(s) 431, 773
BfuI GTATCC 2 cut(s) 370, 554
Bme1390I CCNGG 3 cut(s) 396, 674, 1383
BmeT110I CYCGRG 1 cut(s) 1184
BmiI GGNNCC 4 cut(s) 252, 540, 571, 1162
BmrFI CCNGG 3 cut(s) 396, 674, 1383
BpmI CTGGAG 2 cut(s) 695, 1432
Bpu10I CCTNAGC 2 cut(s) 9, 519
BpuEI CTTGAG 1 cut(s) 1316
Bsa29I ATCGAT 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 363, 1403
BsaHI GRCGYC 2 cut(s) 251, 306
BsaJI CCNNGG 4 cut(s) 85, 395, 1183, 1649
BsaWI WCCGGW 3 cut(s) 541, 1522, 1592
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 778, 837, 1609
Bse1I ACTGG 3 cut(s) 188, 1183, 1449
Bse21I CCTNAGG 1 cut(s) 1123
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 2 cut(s) 363, 1403
BseAI TCCGGA 2 cut(s) 541, 1522
BseBI CCWGG 3 cut(s) 396, 674, 1383
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 4 cut(s) 85, 395, 1183, 1649
BseGI GGATG 9 cut(s) 349, 488, 733, 791, 990, 1194, 1448, 1519, 1580
BseJI GATNNNNATC 2 cut(s) 363, 1403
BseLI CCNNNNNNNGG 4 cut(s) 125, 778, 837, 1609
BseMI GCAATG 1 cut(s) 651
BseNI ACTGG 3 cut(s) 188, 1183, 1449
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 4 cut(s) 182, 334, 716, 1099
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 5 cut(s) 44, 56, 262, 316, 635
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 129, 1182, 1584
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 553, 1485
BsiHKCI CYCGRG 1 cut(s) 1184
BsiSI CCGG 3 cut(s) 542, 1523, 1593
BslFI GGGAC 1 cut(s) 1227
BslI CCNNNNNNNGG 4 cut(s) 125, 778, 837, 1609
BsmAI GTCTC 2 cut(s) 485, 1327
BsmFI GGGAC 1 cut(s) 1227
BsmI GAATGC 2 cut(s) 1071, 1263
BsnI GGCC 3 cut(s) 129, 1182, 1584
BsoBI CYCGRG 1 cut(s) 1184
Bsp1286I GDGCHC 2 cut(s) 553, 1485
Bsp13I TCCGGA 2 cut(s) 541, 1522
Bsp68I TCGCGA 1 cut(s) 262
BspANI GGCC 3 cut(s) 129, 1182, 1584
BspDI ATCGAT 1 cut(s) 353
BspEI TCCGGA 2 cut(s) 541, 1522
BspFNI CGCG 5 cut(s) 44, 56, 262, 316, 635
BspLI GGNNCC 4 cut(s) 252, 540, 571, 1162
BspPI GGATC 6 cut(s) 366, 372, 564, 577, 855, 1322
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 2 cut(s) 431, 773
BsrDI GCAATG 1 cut(s) 651
BsrI ACTGG 3 cut(s) 188, 1183, 1449
BssECI CCNNGG 4 cut(s) 85, 395, 1183, 1649
BssNI GRCGYC 2 cut(s) 251, 306
Bst2UI CCWGG 3 cut(s) 396, 674, 1383
Bst4CI ACNGT 4 cut(s) 232, 881, 1024, 1321
Bst6I CTCTTC 2 cut(s) 820, 1733
BstACI GRCGYC 2 cut(s) 251, 306
BstAFI CTTAAG 2 cut(s) 431, 773
BstC8I GCNNGC 1 cut(s) 649
BstDSI CCRYGG 1 cut(s) 1649
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 9 cut(s) 349, 488, 733, 791, 990, 1194, 1448, 1519, 1580
BstFNI CGCG 5 cut(s) 44, 56, 262, 316, 635
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 4 cut(s) 58, 72, 253, 316
BstMAI GTCTC 2 cut(s) 485, 1327
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 259, 436, 653, 1109
BstNI CCWGG 3 cut(s) 396, 674, 1383
BstSCI CCNGG 3 cut(s) 394, 672, 1381
BstSFI CTRYAG 1 cut(s) 1107
BstUI CGCG 5 cut(s) 44, 56, 262, 316, 635
BstV1I GCAGC 4 cut(s) 182, 334, 716, 1099
BstX2I RGATCY 4 cut(s) 358, 364, 569, 847
BstYI RGATCY 4 cut(s) 358, 364, 569, 847
Bsu15I ATCGAT 1 cut(s) 353
Bsu36I CCTNAGG 1 cut(s) 1123
BsuI GTATCC 2 cut(s) 370, 554
BsuRI GGCC 3 cut(s) 129, 1182, 1584
BsuTUI ATCGAT 1 cut(s) 353
BtgI CCRYGG 1 cut(s) 1649
BtgZI GCGATG 2 cut(s) 243, 1212
BtsCI GGATG 9 cut(s) 349, 488, 733, 791, 990, 1194, 1448, 1519, 1580
BtsIMutI CAGTG 2 cut(s) 195, 1095
BtuMI TCGCGA 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 649
CfoI GCGC 4 cut(s) 58, 72, 253, 316
ClaI ATCGAT 1 cut(s) 353
CseI GACGC 2 cut(s) 641, 1466
Csp6I GTAC 3 cut(s) 1028, 1564, 1767
CviAII CATG 4 cut(s) 131, 407, 1315, 1486
CviQI GTAC 3 cut(s) 1028, 1564, 1767
DinI GGCGCC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 820, 1733
EarI CTCTTC 2 cut(s) 820, 1733
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 2 cut(s) 551, 1483
Eco147I AGGCCT 1 cut(s) 1584
Eco24I GRGCYC 2 cut(s) 553, 1485
Eco53kI GAGCTC 2 cut(s) 551, 1483
Eco57I CTGAAG 1 cut(s) 1442
Eco81I CCTNAGG 1 cut(s) 1123
Eco88I CYCGRG 1 cut(s) 1184
EcoICRI GAGCTC 2 cut(s) 551, 1483
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoRII CCWGG 3 cut(s) 394, 672, 1381
EcoT22I ATGCAT 2 cut(s) 1105, 1672
EcoT38I GRGCYC 2 cut(s) 553, 1485
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
FaeI CATG 4 cut(s) 134, 410, 1318, 1489
FalI AAGNNNNNCTT 2 cut(s) 857, 889
FaqI GGGAC 1 cut(s) 1227
FatI CATG 4 cut(s) 130, 406, 1314, 1485
FauNDI CATATG 1 cut(s) 1644
FokI GGATG 9 cut(s) 356, 495, 740, 798, 977, 1201, 1455, 1506, 1587
FriOI GRGCYC 2 cut(s) 553, 1485
FspBI CTAG 4 cut(s) 450, 468, 978, 1076
GlaI GCGC 4 cut(s) 57, 71, 252, 315
GsuI CTGGAG 2 cut(s) 695, 1432
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 3 cut(s) 129, 1182, 1584
HapII CCGG 3 cut(s) 542, 1523, 1593
HgaI GACGC 2 cut(s) 641, 1466
HhaI GCGC 4 cut(s) 58, 72, 253, 316
Hin1I GRCGYC 2 cut(s) 251, 306
Hin1II CATG 4 cut(s) 134, 410, 1318, 1489
Hin6I GCGC 4 cut(s) 56, 70, 251, 314
HinP1I GCGC 4 cut(s) 56, 70, 251, 314
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 2 cut(s) 1010, 1686
HinfI GANTC 9 cut(s) 62, 332, 603, 640, 736, 929, 1360, 1528, 1681
HpaII CCGG 3 cut(s) 542, 1523, 1593
HphI GGTGA 1 cut(s) 1646
Hpy166II GTNNAC 5 cut(s) 116, 455, 1370, 1564, 1767
Hpy188III TCNNGA 9 cut(s) 261, 341, 362, 542, 619, 1186, 1295, 1523, 1572
Hpy8I GTNNAC 5 cut(s) 116, 455, 1370, 1564, 1767
Hpy99I CGWCG 2 cut(s) 311, 640
HpyAV CCTTC 6 cut(s) 280, 776, 960, 1301, 1704, 1737
HpyCH4III ACNGT 4 cut(s) 232, 881, 1024, 1321
HpyCH4IV ACGT 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 259, 436, 653, 1109
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 2 cut(s) 251, 306
Hsp92II CATG 4 cut(s) 134, 410, 1318, 1489
HspAI GCGC 4 cut(s) 56, 70, 251, 314
KasI GGCGCC 1 cut(s) 250
Kpn2I TCCGGA 2 cut(s) 541, 1522
LmnI GCTCC 4 cut(s) 154, 523, 1451, 1595
Lsp1109I GCAGC 4 cut(s) 182, 334, 716, 1099
MaeI CTAG 4 cut(s) 450, 468, 978, 1076
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 92, 943, 1127, 1551
MfeI CAATTG 3 cut(s) 97, 371, 1283
MflI RGATCY 4 cut(s) 358, 364, 569, 847
MhlI GDGCHC 2 cut(s) 553, 1485
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 4 cut(s) 597, 634, 745, 1537
MmeI TCCRAC 2 cut(s) 1370, 1731
Mph1103I ATGCAT 2 cut(s) 1105, 1672
MroI TCCGGA 2 cut(s) 541, 1522
MseI TTAA 6 cut(s) 143, 242, 432, 612, 774, 1780
MslI CAYNNNNRTG 1 cut(s) 1573
MspA1I CMGCKG 2 cut(s) 248, 707
MspCI CTTAAG 2 cut(s) 431, 773
MspI CCGG 3 cut(s) 542, 1523, 1593
MspR9I CCNGG 3 cut(s) 396, 674, 1383
MunI CAATTG 3 cut(s) 97, 371, 1283
Mva1269I GAATGC 2 cut(s) 1071, 1263
MvaI CCWGG 3 cut(s) 396, 674, 1383
MvnI CGCG 5 cut(s) 44, 56, 262, 316, 635
MwoI GCNNNNNNNGC 7 cut(s) 10, 41, 50, 259, 436, 653, 1109
NarI GGCGCC 1 cut(s) 251
NdeI CATATG 1 cut(s) 1644
NlaIII CATG 4 cut(s) 134, 410, 1318, 1489
NlaIV GGNNCC 4 cut(s) 252, 540, 571, 1162
NmeAIII GCCGAG 2 cut(s) 311, 1607
NruI TCGCGA 1 cut(s) 262
NsiI ATGCAT 2 cut(s) 1105, 1672
PceI AGGCCT 1 cut(s) 1584
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 333
PctI GAATGC 2 cut(s) 1071, 1263
PfeI GAWTC 5 cut(s) 62, 332, 929, 1360, 1681
PflMI CCANNNNNTGG 1 cut(s) 837
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 4 cut(s) 597, 634, 744, 1536
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 4 cut(s) 597, 634, 744, 1536
Psp124BI GAGCTC 2 cut(s) 553, 1485
Psp6I CCWGG 3 cut(s) 394, 672, 1381
PspGI CCWGG 3 cut(s) 394, 672, 1381
PspN4I GGNNCC 4 cut(s) 252, 540, 571, 1162
PsuI RGATCY 4 cut(s) 358, 364, 569, 847
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 707
RruI TCGCGA 1 cut(s) 262
RsaI GTAC 3 cut(s) 1029, 1565, 1768
RsaNI GTAC 3 cut(s) 1028, 1564, 1767
RseI CAYNNNNRTG 1 cut(s) 1573
SacI GAGCTC 2 cut(s) 553, 1485
SaqAI TTAA 6 cut(s) 143, 242, 432, 612, 774, 1780
SchI GAGTC 4 cut(s) 597, 634, 745, 1537
ScrFI CCNGG 3 cut(s) 396, 674, 1383
SduI GDGCHC 2 cut(s) 553, 1485
SfcI CTRYAG 1 cut(s) 1107
SfoI GGCGCC 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 1573
SmlI CTYRAG 3 cut(s) 431, 773, 1295
SmoI CTYRAG 3 cut(s) 431, 773, 1295
SseBI AGGCCT 1 cut(s) 1584
SspDI GGCGCC 1 cut(s) 250
SspMI CTAG 4 cut(s) 450, 468, 978, 1076
SstI GAGCTC 2 cut(s) 553, 1485
StuI AGGCCT 1 cut(s) 1584
StyD4I CCNGG 3 cut(s) 394, 672, 1381
TaaI ACNGT 4 cut(s) 232, 881, 1024, 1321
TaiI ACGT 1 cut(s) 309
TaqI TCGA 7 cut(s) 300, 309, 327, 353, 497, 592, 618
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 9 cut(s) 16, 44, 56, 209, 212, 251, 439, 467, 518
TfiI GAWTC 5 cut(s) 62, 332, 929, 1360, 1681
Tru1I TTAA 6 cut(s) 143, 242, 432, 612, 774, 1780
Tru9I TTAA 6 cut(s) 143, 242, 432, 612, 774, 1780
TscAI CASTG 2 cut(s) 195, 1102
TseI GCWGC 4 cut(s) 195, 347, 704, 1112
TspDTI ATGAA 5 cut(s) 345, 395, 807, 842, 1686
TspGWI ACGGA 4 cut(s) 395, 435, 908, 1666
TspRI CASTG 2 cut(s) 195, 1102
Van91I CCANNNNNTGG 1 cut(s) 837
Vha464I CTTAAG 2 cut(s) 431, 773
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 2 cut(s) 908, 1048
XspI CTAG 4 cut(s) 450, 468, 978, 1076
ZraI GACGTC 1 cut(s) 307
Zsp2I ATGCAT 2 cut(s) 1105, 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.