Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015202

Physical Location & Seq

Genomic Coordinates Forward (+)

19814124 .. 19815019

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16640.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATCGATCCTAATTCTCCCTCTGCTGAAACCAATGTCCGTGAACTCCCTCAAGCATCCAATGACAAAGTACACAACAGTTACCAGAAGCTGATTATCAAACATGCCCGGTTGAAAAAACTGAGCTTGTGGGGTTGTTCTGGCTTAGATGCTCTATATTTAAACTGCCGAGAACTCAATGATCTGAACTTGAATTATTGCAAAAATTTGTACCCAGAGAGATTGGTGCTTCAGTGCCCCAATTTAGAAAATGTGCATGCATCAGGTTGTCAAGAATTGTTGATTGGGGCCATTCAGAGCCAGGTTGATAACAATGCTGCCGCGGATAACCAATTACCATGTAAGCGCCTAGCTGATGGCTCAAAGAGGGTTGGGGTGCCTCATTTTCTCAGTGCTGAACAGCCATCTGAGGATGATAAGAAGCGAAGAAAGATCGAGAGGCGGCAGTGCAGTGTGCTTGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000278 GO:0000280 GO:0001673 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0016043 GO:0019005 GO:0019538 GO:0019941 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030163 GO:0031146 GO:0031461 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0043073 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051603 GO:0051704 GO:0055047 GO:0061458 GO:0071704 GO:0071840 GO:0140014 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

156

Amino Acids

17.43

Weight (kDa)

8.47

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54650
fragaria_vesca	FvH4_2g22510
malus_domestica	MD05G1205600.v1.1 MD10G1192800.v1.1
prunus_persica	Prupe.8G232000_v2.0.a1
pyrus_communis	pycom05g19170 pycom10g16630 pycom10g16640
rosa_chinensis	RchiOBHm_Chr6g0289551
rosa_laevigata	RLG00000012294
rosa_roxburghii	Rroxscaffold_7G00177870
rosa_rugosa	Rorug06G0204300
rosa_samantha	Rh6AG316000 Rh6CG329000 Rh6DG314700
rosa_wichuraiana	Rw6G027250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	1 cut(s)	323
AciI	CCGC	3 cut(s)	321, 323, 442
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	72, 212
AgsI	TTSAA	2 cut(s)	115, 193
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	3 cut(s)	91, 126, 353
AluI	AGCT	3 cut(s)	91, 126, 353
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	109
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	2 cut(s)	350, 412
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	109
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	349
BisI	GCNGC	3 cut(s)	318, 321, 443
BlsI	GCNGC	3 cut(s)	319, 322, 444
Bme1390I	CCNGG	2 cut(s)	109, 302
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	289, 378
BmrFI	CCNGG	2 cut(s)	109, 302
BmsI	GCATC	3 cut(s)	65, 139, 269
BpuEI	CTTGAG	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	109
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	2 cut(s)	56, 418
BseMII	CTCAG	3 cut(s)	113, 399, 403
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	3, 7, 181, 432
BspACI	CCGC	3 cut(s)	321, 323, 442
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	3 cut(s)	114, 400, 402
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	289, 378
BspPI	GGATC	1 cut(s)	2
BspT107I	GGYRCC	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	3, 7, 181, 432
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	122, 145, 389, 408
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	56, 418
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	4 cut(s)	6, 10, 184, 435
BstMBI	GATC	4 cut(s)	3, 7, 181, 432
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	2 cut(s)	107, 260
BstSCI	CCNGG	2 cut(s)	107, 300
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	56, 418
BtsI	GCAGTG	2 cut(s)	452, 457
BtsIMutI	CAGTG	4 cut(s)	239, 397, 452, 457
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	288
Cfr42I	CCGCGG	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	71, 211
CviAII	CATG	3 cut(s)	104, 257, 339
CviJI	RGCY	8 cut(s)	91, 126, 144, 290, 300, 353, 360, 403
CviKI_1	RGCY	8 cut(s)	91, 126, 144, 290, 300, 353, 360, 403
CviQI	GTAC	2 cut(s)	71, 211
DdeI	CTNAG	4 cut(s)	122, 145, 389, 408
DpnI	GATC	4 cut(s)	5, 9, 183, 434
DpnII	GATC	4 cut(s)	3, 7, 181, 432
DraI	TTTAAA	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	3 cut(s)	107, 260, 342
FaiI	YATR	4 cut(s)	105, 157, 258, 340
FatI	CATG	3 cut(s)	103, 256, 338
Fnu4HI	GCNGC	3 cut(s)	318, 321, 443
FokI	GGATG	2 cut(s)	43, 425
Fsp4HI	GCNGC	3 cut(s)	318, 321, 443
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	318, 321, 443
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	107, 260, 342
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	44, 73
Hpy188I	TCNGA	3 cut(s)	186, 297, 409
Hpy188III	TCNNGA	2 cut(s)	272, 436
Hpy8I	GTNNAC	2 cut(s)	44, 73
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	201, 256, 260, 450
HpyF3I	CTNAG	4 cut(s)	122, 145, 389, 408
Hsp92II	CATG	3 cut(s)	107, 260, 342
HspAI	GCGC	1 cut(s)	346
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	3, 7, 181, 432
LpnPI	CCDG	7 cut(s)	98, 122, 126, 228, 249, 287, 314
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	3 cut(s)	65, 139, 269
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	4 cut(s)	5, 9, 183, 434
MboI	GATC	4 cut(s)	3, 7, 181, 432
MboII	GAAGA	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	6 cut(s)	13, 193, 205, 241, 275, 332
MnlI	CCTC	6 cut(s)	31, 60, 360, 390, 403, 432
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	109, 302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	323
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	3, 7, 181, 432
NlaIII	CATG	3 cut(s)	107, 260, 342
NlaIV	GGNNCC	2 cut(s)	289, 378
NmeAIII	GCCGAG	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	2 cut(s)	107, 260
PaeI	GCATGC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	319, 322, 444
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	289, 378
PspPI	GGNCC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	72, 212
RsaNI	GTAC	2 cut(s)	71, 211
SacII	CCGCGG	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	318, 321, 443
Sau3AI	GATC	4 cut(s)	3, 7, 181, 432
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	109, 302
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	5 cut(s)	93, 128, 268, 306, 355
SfaNI	GCATC	3 cut(s)	65, 139, 269
Sfr303I	CCGCGG	1 cut(s)	324
SgrBI	CCGCGG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	51
SmoI	CTYRAG	1 cut(s)	51
SphI	GCATGC	1 cut(s)	260
Sse9I	AATT	6 cut(s)	13, 193, 205, 241, 275, 332
SsiI	CCGC	3 cut(s)	321, 323, 442
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	107, 300
TaaI	ACNGT	1 cut(s)	80
TaqI	TCGA	2 cut(s)	6, 435
TasI	AATT	6 cut(s)	13, 193, 205, 241, 275, 332
TatI	WGTACW	1 cut(s)	70
TauI	GCSGC	2 cut(s)	323, 445
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	4 cut(s)	239, 397, 452, 457
TseI	GCWGC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	4 cut(s)	239, 397, 452, 457
XapI	RAATTY	1 cut(s)	205
XceI	RCATGY	2 cut(s)	107, 260
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.