AT3G58760

Ankyrin repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
21728144 .. 21732086
3943 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58760.3

Sequence Viewer

Length: 1416 bp
ATGACGATTAAGCCTAAATCGCCGGCGAGATTCAAGCTAGGTAGGCAGTCTTCGCTTGCGCCGGAATCAAGAACCCCGATTGATACGTTAACGGAAGATGAGGACGACGACTTGGCTGCGGCGGCTACAGCTGGGATCGGGGATCCGACGATTCGTTTAATGTATTTAGCCAACGAAGGTGATATCGATGGCATCAATAAGATGCTTGATTCGGGTACTAATGTTGATTACCGTGACATCGATGCCCGTACTGCTCTTCACGTCGCCGCTTGTCAAGGACGAACCGATGTCGTTGAGCTGCTGCTTAGCCGTGGTGCTAAGGTTGATACGAAGGACCGATGGGGTAGTACGCCTCTTGCAGATGCAGTGTATTACAAAAATCATGATGTGATTAAACTTTTGGAGAAACATGGTGCTAAGCCTACGATTGCTCCTATGCATGTCCTAACTGATAAAGAAGTTCCAGAGTACGAGATTCATCCTACAGAGCTTGATTTTTCCAACTCTGTCAAAATTTCAAAGGGTACCTTTAACAAGGCTTCATGGCGTGGAATTGACGTGGCTGTTAAAACCTTTGGAGAGGAAATGTTCACTGATGAAGACAAAGTGAATGCATTTAGGGACGAACTTGCACTGCTTCAAAAGATACGCCATCCGAATGTTGTTCAGTTTCTAGGGGCAGTTACTCAGAGTACCCCCATGATGATTGTCACCGAGTATTTACCAAAGGGAGATCTTCGACAATATCTAGACAGGAAAGGACCTCTAATGCCAGCACACGCAGTGAAGTTCGCCCTTGAAATTGCTAGGGGAATGAATTATTTGCACGAACATAAACCTGAAGCAATAATCCATTGCGACCTAGAACCTCCAAACATACTGCGGGATGATTCGGGACATCTGAAAGTTGCAGACTTTGGAGTCAGCAAGCTGCTGGTAGTTAAGAAGACAGTTAAAAAAGACAGACCTGTTGTTACATGCTTGGACAGTTCATGGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAGATGATAGAAGGTTGTGAACCATTTCATGAGATAGAAGACCGCGAAGTTCCTAAAGCATATATTGAAGATGAACGTCCACCATTCAATGCTCCAACAAAATCATATCCTTTCGGGTTACAAGAGCTAATCCAGGATTGTTGGGACAAAGAAGCATCAAAAAGACCAACATTTAGAGTAATCATCTCTACTTTGGAGTTGATAAGTGATCGAATTGCACGCAAAAGGAGCTGGAAGGTGATGCTAGGAAGATGCCTTCCAAGATTCAGATTGTTTACAAAGCGAGATTATGTGAATCCCGGTGGTAGTAACCGCTCATCAGGCTCATTCAACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.34

Weight (kDa)

6.22

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 116 - 205 3.1e-15 Ankyrin repeats (3 copies)
Ank PF00023 146 - 175 3.1e-07 Ankyrin repeat
PK_Tyr_Ser-Thr PF07714 234 - 487 1.8e-53 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 245 - 484 1.7e-47 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 920
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 1392
AccII CGCG 1 cut(s) 1122
AciI CCGC 6 cut(s) 119, 122, 267, 883, 1120, 1390
AclWI GGATC 3 cut(s) 137, 143, 150
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 861
AdeI CACNNNGTG 1 cut(s) 784
AfaI GTAC 6 cut(s) 217, 250, 349, 470, 526, 694
AgsI TTSAA 7 cut(s) 34, 519, 641, 800, 1145, 1165, 1408
AjiI CACGTC 2 cut(s) 262, 559
AjnI CCWGG 1 cut(s) 1209
AluBI AGCT 7 cut(s) 37, 131, 298, 490, 931, 1204, 1308
AluI AGCT 7 cut(s) 37, 131, 298, 490, 931, 1204, 1308
AlwI GGATC 3 cut(s) 137, 143, 150
ApeKI GCWGC 4 cut(s) 116, 298, 301, 931
ApoI RAATTY 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 1101
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 334, 761
AsuC2I CCSGG 1 cut(s) 1377
AsuHPI GGTGA 3 cut(s) 191, 703, 1327
AvaII GGWCC 2 cut(s) 334, 761
BaeI ACNNNNGTAYC 4 cut(s) 207, 240, 1029, 1062
BamHI GGATCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 524
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 4 cut(s) 42, 606, 953, 1122
BbvI GCAGC 4 cut(s) 103, 285, 288, 918
BccI CCATC 3 cut(s) 182, 333, 660
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 1211
BcnI CCSGG 1 cut(s) 1377
BfaI CTAG 6 cut(s) 38, 674, 749, 807, 863, 1322
BfmI CTRYAG 2 cut(s) 126, 483
BglII AGATCT 1 cut(s) 733
BisI GCNGC 7 cut(s) 117, 120, 123, 267, 299, 302, 932
BlpI GCTNAGC 2 cut(s) 305, 417
BlsI GCNGC 7 cut(s) 118, 121, 124, 268, 300, 303, 933
Bme1390I CCNGG 2 cut(s) 1211, 1377
Bme18I GGWCC 2 cut(s) 334, 761
BmgBI CACGTC 2 cut(s) 262, 559
BmgT120I GGNCC 2 cut(s) 334, 761
BmiI GGNNCC 3 cut(s) 144, 526, 1008
BmrFI CCNGG 2 cut(s) 1211, 1377
BmsI GCATC 7 cut(s) 192, 201, 232, 352, 1241, 1308, 1319
BpiI GAAGAC 4 cut(s) 42, 606, 953, 1122
BpmI CTGGAG 1 cut(s) 993
Bpu10I CCTNAGC 1 cut(s) 318
Bpu1102I GCTNAGC 2 cut(s) 305, 417
BpuMI CCSGG 1 cut(s) 1377
Bsa29I ATCGAT 2 cut(s) 186, 240
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 853
BseBI CCWGG 1 cut(s) 1211
BseCI ATCGAT 2 cut(s) 186, 240
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 3 cut(s) 478, 652, 892
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 1 cut(s) 701
BseXI GCAGC 4 cut(s) 103, 285, 288, 918
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 1122
BshNI GGYRCC 1 cut(s) 524
BshVI ATCGAT 2 cut(s) 186, 240
BsiSI CCGG 3 cut(s) 23, 62, 1377
BslFI GGGAC 3 cut(s) 635, 909, 1235
BsmFI GGGAC 3 cut(s) 635, 909, 1235
BsmI GAATGC 1 cut(s) 616
Bsp143I GATC 4 cut(s) 135, 142, 733, 1285
Bsp1720I GCTNAGC 2 cut(s) 305, 417
BspACI CCGC 6 cut(s) 119, 122, 267, 883, 1120, 1390
BspCNI CTCAG 1 cut(s) 700
BspDI ATCGAT 2 cut(s) 186, 240
BspFNI CGCG 1 cut(s) 1122
BspHI TCATGA 2 cut(s) 382, 1105
BspLI GGNNCC 3 cut(s) 144, 526, 1008
BspPI GGATC 3 cut(s) 137, 143, 150
BspQI GCTCTTC 1 cut(s) 261
BspT107I GGYRCC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 1392
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 4 cut(s) 135, 142, 733, 1285
Bst2UI CCWGG 1 cut(s) 1211
Bst4CI ACNGT 3 cut(s) 233, 952, 989
Bst6I CTCTTC 2 cut(s) 261, 1023
BstC8I GCNNGC 5 cut(s) 24, 57, 774, 929, 1297
BstDEI CTNAG 4 cut(s) 305, 318, 417, 687
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 478, 652, 892
BstFNI CGCG 1 cut(s) 1122
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 4 cut(s) 138, 145, 736, 1288
BstMBI GATC 4 cut(s) 135, 142, 733, 1285
BstMWI GCNNNNNNNGC 8 cut(s) 19, 43, 52, 122, 128, 251, 1305, 1398
BstNI CCWGG 1 cut(s) 1211
BstNSI RCATGY 2 cut(s) 443, 981
BstSCI CCNGG 2 cut(s) 1209, 1375
BstSFI CTRYAG 2 cut(s) 126, 483
BstUI CGCG 1 cut(s) 1122
BstV1I GCAGC 4 cut(s) 103, 285, 288, 918
BstV2I GAAGAC 4 cut(s) 42, 606, 953, 1122
BstX2I RGATCY 2 cut(s) 142, 733
BstYI RGATCY 2 cut(s) 142, 733
Bsu15I ATCGAT 2 cut(s) 186, 240
BsuTUI ATCGAT 2 cut(s) 186, 240
BtgI CCRYGG 1 cut(s) 310
BtrI CACGTC 2 cut(s) 262, 559
BtsCI GGATG 3 cut(s) 478, 652, 892
BtsI GCAGTG 3 cut(s) 372, 632, 789
BtsIMutI CAGTG 4 cut(s) 372, 591, 632, 789
Cac8I GCNNGC 5 cut(s) 24, 57, 774, 929, 1297
CciI TCATGA 2 cut(s) 382, 1105
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 334, 761
ClaI ATCGAT 2 cut(s) 186, 240
Csp6I GTAC 6 cut(s) 216, 249, 348, 469, 525, 693
CviAII CATG 8 cut(s) 383, 410, 440, 543, 700, 978, 993, 1106
CviQI GTAC 6 cut(s) 216, 249, 348, 469, 525, 693
DdeI CTNAG 4 cut(s) 305, 318, 417, 687
DpnI GATC 4 cut(s) 137, 144, 735, 1287
DpnII GATC 4 cut(s) 135, 142, 733, 1285
DraIII CACNNNGTG 1 cut(s) 784
DrdI GACNNNNNNGTC 1 cut(s) 920
DseDI GACNNNNNNGTC 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 261, 1023
EarI CTCTTC 2 cut(s) 261, 1023
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 334, 761
Eco57I CTGAAG 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 1209
EcoRV GATATC 1 cut(s) 184
EcoT22I ATGCAT 2 cut(s) 441, 616
FaeI CATG 8 cut(s) 386, 413, 443, 546, 703, 981, 996, 1109
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 3 cut(s) 635, 909, 1235
FatI CATG 8 cut(s) 382, 409, 439, 542, 699, 977, 992, 1105
FauI CCCGC 1 cut(s) 876
Fnu4HI GCNGC 7 cut(s) 117, 120, 123, 267, 299, 302, 932
FokI GGATG 3 cut(s) 465, 639, 899
Fsp4HI GCNGC 7 cut(s) 117, 120, 123, 267, 299, 302, 932
FspBI CTAG 6 cut(s) 38, 674, 749, 807, 863, 1322
GlaI GCGC 1 cut(s) 60
GluI GCNGC 7 cut(s) 117, 120, 123, 267, 299, 302, 932
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 993
HapII CCGG 3 cut(s) 23, 62, 1377
HhaI GCGC 1 cut(s) 61
Hin1II CATG 8 cut(s) 386, 413, 443, 546, 703, 981, 996, 1109
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 9 cut(s) 30, 65, 151, 209, 475, 890, 921, 1341, 1372
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 3 cut(s) 23, 62, 1377
HphI GGTGA 3 cut(s) 191, 703, 1327
Hpy166II GTNNAC 5 cut(s) 90, 591, 1097, 1157, 1353
Hpy188I TCNGA 5 cut(s) 147, 657, 690, 903, 1346
Hpy188III TCNNGA 7 cut(s) 69, 383, 464, 749, 894, 1010, 1106
Hpy8I GTNNAC 5 cut(s) 90, 591, 1097, 1157, 1353
Hpy99I CGWCG 3 cut(s) 110, 151, 266
HpyAV CCTTC 5 cut(s) 170, 325, 1082, 1306, 1343
HpyCH4III ACNGT 3 cut(s) 233, 952, 989
HpyCH4IV ACGT 4 cut(s) 86, 261, 558, 1153
HpyCH4V TGCA 8 cut(s) 359, 365, 439, 614, 632, 826, 911, 1295
HpyF10VI GCNNNNNNNGC 8 cut(s) 19, 43, 52, 122, 128, 251, 1305, 1398
HpyF3I CTNAG 4 cut(s) 305, 318, 417, 687
HpySE526I ACGT 4 cut(s) 86, 261, 558, 1153
Hsp92II CATG 8 cut(s) 386, 413, 443, 546, 703, 981, 996, 1109
HspAI GCGC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 528
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 135, 142, 733, 1285
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 4 cut(s) 436, 1012, 1174, 1305
Lsp1109I GCAGC 4 cut(s) 103, 285, 288, 918
LweI GCATC 7 cut(s) 192, 201, 232, 352, 1241, 1308, 1319
MaeI CTAG 6 cut(s) 38, 674, 749, 807, 863, 1322
MaeII ACGT 4 cut(s) 86, 261, 558, 1153
MaeIII GTNAC 6 cut(s) 233, 682, 709, 973, 1194, 1385
MalI GATC 4 cut(s) 137, 144, 735, 1287
MbiI CCGCTC 1 cut(s) 1392
MboI GATC 4 cut(s) 135, 142, 733, 1285
MflI RGATCY 2 cut(s) 142, 733
MluCI AATT 5 cut(s) 513, 552, 801, 817, 1290
MlyI GAGTC 1 cut(s) 930
MmeI TCCRAC 3 cut(s) 170, 525, 1196
MnlI CCTC 6 cut(s) 94, 363, 574, 774, 879, 1006
Mph1103I ATGCAT 2 cut(s) 441, 616
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 1101
MseI TTAA 9 cut(s) 9, 89, 158, 393, 531, 567, 942, 954, 1067
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 3 cut(s) 23, 62, 1377
MspR9I CCNGG 2 cut(s) 1211, 1377
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 1211
MvnI CGCG 1 cut(s) 1122
MwoI GCNNNNNNNGC 8 cut(s) 19, 43, 52, 122, 128, 251, 1305, 1398
NaeI GCCGGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 1377
NdeII GATC 4 cut(s) 135, 142, 733, 1285
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 8 cut(s) 386, 413, 443, 546, 703, 981, 996, 1109
NlaIV GGNNCC 3 cut(s) 144, 526, 1008
NmuCI GTSAC 2 cut(s) 233, 709
NsiI ATGCAT 2 cut(s) 441, 616
NspI RCATGY 2 cut(s) 443, 981
PagI TCATGA 2 cut(s) 382, 1105
PciSI GCTCTTC 1 cut(s) 261
PctI GAATGC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 8 cut(s) 30, 65, 151, 209, 475, 890, 1341, 1372
PfoI TCCNGGA 1 cut(s) 1209
PkrI GCNGC 7 cut(s) 118, 121, 124, 268, 300, 303, 933
PleI GAGTC 1 cut(s) 929
PpsI GAGTC 1 cut(s) 929
PpuMI RGGWCCY 1 cut(s) 761
Psp5II RGGWCCY 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 1209
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 1209
PspN4I GGNNCC 3 cut(s) 144, 526, 1008
PspPI GGNCC 2 cut(s) 334, 761
PspPPI RGGWCCY 1 cut(s) 761
PsuI RGATCY 2 cut(s) 142, 733
PvuII CAGCTG 1 cut(s) 131
RsaI GTAC 6 cut(s) 217, 250, 349, 470, 526, 694
RsaNI GTAC 6 cut(s) 216, 249, 348, 469, 525, 693
RseI CAYNNNNRTG 1 cut(s) 657
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 9 cut(s) 9, 89, 158, 393, 531, 567, 942, 954, 1067
SatI GCNGC 7 cut(s) 117, 120, 123, 267, 299, 302, 932
Sau3AI GATC 4 cut(s) 135, 142, 733, 1285
Sau96I GGNCC 2 cut(s) 334, 761
SchI GAGTC 1 cut(s) 930
ScrFI CCNGG 2 cut(s) 1211, 1377
SfaNI GCATC 7 cut(s) 192, 201, 232, 352, 1241, 1308, 1319
SfcI CTRYAG 2 cut(s) 126, 483
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 2 cut(s) 334, 761
SmiMI CAYNNNNRTG 1 cut(s) 657
Sse9I AATT 5 cut(s) 513, 552, 801, 817, 1290
SsiI CCGC 6 cut(s) 119, 122, 267, 883, 1120, 1390
SspMI CTAG 6 cut(s) 38, 674, 749, 807, 863, 1322
StyD4I CCNGG 2 cut(s) 1209, 1375
TaaI ACNGT 3 cut(s) 233, 952, 989
TaiI ACGT 4 cut(s) 89, 264, 561, 1156
TaqI TCGA 4 cut(s) 186, 240, 739, 1288
TaqII GACCGA 1 cut(s) 351
TasI AATT 5 cut(s) 513, 552, 801, 817, 1290
TauI GCSGC 3 cut(s) 122, 125, 269
TfiI GAWTC 8 cut(s) 30, 65, 151, 209, 475, 890, 1341, 1372
Tru1I TTAA 9 cut(s) 9, 89, 158, 393, 531, 567, 942, 954, 1067
Tru9I TTAA 9 cut(s) 9, 89, 158, 393, 531, 567, 942, 954, 1067
TscAI CASTG 4 cut(s) 372, 598, 639, 789
TseFI GTSAC 2 cut(s) 233, 709
TseI GCWGC 4 cut(s) 116, 298, 301, 931
Tsp45I GTSAC 2 cut(s) 233, 709
TspDTI ATGAA 8 cut(s) 467, 531, 612, 830, 981, 1041, 1094, 1164
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 4 cut(s) 372, 598, 639, 789
VpaK11BI GGWCC 2 cut(s) 334, 761
XapI RAATTY 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 748
XceI RCATGY 2 cut(s) 443, 981
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 6 cut(s) 38, 674, 749, 807, 863, 1322
Zsp2I ATGCAT 2 cut(s) 441, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.