Rorug02G0423100

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006025
Physical Location & Seq
Forward (+)
54420245 .. 54420697
453 bp
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UTR
Exon/CDS
Intron
Rorug02G0423100.1

Sequence Viewer

Length: 453 bp
ATGTTTAATTCCTGTGAGGAGCTTGTGGTGTTGAAGAAATTTGGGGTGCAATGTAAACCTCGTCGTGCTCCACGAATAATTGAAGTTAACTGGCATCCTCCTCCTTATGGGTATATTAAGGTGAACACTGATGGGGCATGGAAAACTAGCTCGAATAAAGTTGGCTATGGCGGGGTGTTTCGGGATTATAGAGGCAAGGTTCTAGGTGCTTTTTGTTCTAATTTGGACATTGCTAGTTCTGTTGCCGCTGAAGTTATGGCTGTTATCCAAGCTATTGAATTAGCTTGGGTAAGGGAGTGGAAGCATATTTGGTTGGAAGTGGATTCAAAGTTAGTTCTTCACTTCCTTCGCTCTCCTACCTTAGTGGCTTGGCAACTAATTAAGAGTAGAGTGGAGGAACTGCTTGTACCAGATTTCGCAGATGGAGTTTTGCTCTTCTCATATTTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Pkinase_Tyr

Protein Analysis

150

Amino Acids

17.07

Weight (kDa)

8.79

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 42 - 119 7.5e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 171, 246
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 34, 83, 278, 327
AluBI AGCT 4 cut(s) 22, 150, 272, 284
AluI AGCT 4 cut(s) 22, 150, 272, 284
Alw21I GWGCWC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 70
BccI CCATC 2 cut(s) 125, 416
BfaI CTAG 3 cut(s) 147, 203, 234
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmsI GCATC 1 cut(s) 103
BplI GAGNNNNNCTC 2 cut(s) 417, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 95
Bse3DI GCAATG 2 cut(s) 56, 228
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 2 cut(s) 56, 228
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 2 cut(s) 32, 90
BsiHKAI GWGCWC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 70
BspACI CCGC 2 cut(s) 171, 246
BspQI GCTCTTC 1 cut(s) 440
BsrDI GCAATG 2 cut(s) 56, 228
BsrI ACTGG 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 126
Csp6I GTAC 1 cut(s) 407
CviAII CATG 1 cut(s) 138
CviJI RGCY 7 cut(s) 22, 150, 165, 260, 272, 284, 368
CviKI_1 RGCY 7 cut(s) 22, 150, 165, 260, 272, 284, 368
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 270
FaeI CATG 1 cut(s) 141
FaiI YATR 8 cut(s) 108, 114, 139, 168, 189, 257, 306, 442
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 3 cut(s) 147, 203, 234
GluI GCNGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 141
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 1 cut(s) 323
HpaI GTTAAC 1 cut(s) 88
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 56, 88, 124
Hpy188III TCNNGA 2 cut(s) 182, 450
Hpy8I GTNNAC 3 cut(s) 56, 88, 124
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 88
LguI GCTCTTC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 19, 73
LpnPI CCDG 3 cut(s) 25, 76, 423
LweI GCATC 1 cut(s) 103
MaeI CTAG 3 cut(s) 147, 203, 234
MboII GAAGA 3 cut(s) 46, 329, 427
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 6 cut(s) 7, 38, 78, 220, 278, 378
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 6 cut(s) 10, 69, 108, 111, 185, 388
MseI TTAA 4 cut(s) 6, 87, 117, 381
MspA1I CMGCKG 1 cut(s) 248
NlaIII CATG 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 70
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 390, 422
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 440
SaqAI TTAA 4 cut(s) 6, 87, 117, 381
SatI GCNGC 1 cut(s) 246
SduI GDGCHC 1 cut(s) 70
SetI ASST 9 cut(s) 24, 61, 123, 152, 201, 208, 274, 286, 362
SfaNI GCATC 1 cut(s) 103
Sse9I AATT 6 cut(s) 7, 38, 78, 220, 278, 378
SsiI CCGC 2 cut(s) 171, 246
SspMI CTAG 3 cut(s) 147, 203, 234
TaqI TCGA 1 cut(s) 152
TasI AATT 6 cut(s) 7, 38, 78, 220, 278, 378
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 4 cut(s) 6, 87, 117, 381
Tru9I TTAA 4 cut(s) 6, 87, 117, 381
TscAI CASTG 1 cut(s) 133
TspRI CASTG 1 cut(s) 133
XapI RAATTY 1 cut(s) 38
XspI CTAG 3 cut(s) 147, 203, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.