Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006025

Physical Location & Seq

Genomic Coordinates Reverse (-)

12767530 .. 12769912

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1141800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATTGAAACTTTTGATAGTTTCTTAATTGTTCACTTTGGGGTGAGCAAGCTACTGAAAGTTGCAAATACAGTTAAAGAAGACAGACCTGTGACAAGTCAAGACACTTGGAGATATGTGGCTCCAGAGGTTTACAGAAATGAAGAATATGATACTAAAGTGGATGTTTTTTCGTTTGCTTTGATCTTGCAAGAGATGATTGAAGGTTGCATACCATTTTCTACAAAGCCAGAAACAGAAGTTCCTAAAGCATATGTTGCAAATGAGCGCCCACCATTTAGAGCGCCACCAAAGCATTATGCACACGGATTGAAGGAGTTAATCGAGGAGTGTTGGAGTGAGGACCCATTCAAGAGACCATCATTCAAGCAAATAATTAAGAGGTTGGATGACATTAATAACCAGTTTGCTCAAAAAAGATGCTGGAAGGTCACGCCACTTACATGTCTCCAGAATCTCGAGTCCATGGTGAAGAAAGATCGGACGAGTCCAAGCAGCCGTTCATCTTCCTGCTCTACAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Pkinase_Tyr

Protein Analysis

176

Amino Acids

20.36

Weight (kDa)

8.24

Isoelectric Point (pI)

68.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 127	1.1e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 129	4.9e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58760 AT3G58760 AT3G58760 AT3G58760 AT3G58760 AT3G58760
fragaria_vesca	FvH4_6g37800 FvH4_6g37800 FvH4_6g37800 FvH4_6g37800 FvH4_6g37800 FvH4_6g37800
malus_domestica	MD09G1155800.v1.1 MD17G1141800.v1.1
prunus_persica	Prupe.3G170100_v2.0.a1 Prupe.3G170100_v2.0.a1 Prupe.3G170100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0150911
rosa_laevigata	RLG00000020515
rosa_multiflora	Rmu_sc0000185.1_g000017
rosa_roxburghii	Rroxscaffold_2G00096860
rosa_rugosa	Rorug02G0423100
rosa_samantha	Rh2AG483400 Rh2BG495800 Rh2CG469700 Rh2DG506800
rosa_wichuraiana	Rw2G039620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	5 cut(s)	8, 203, 313, 352, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	349, 452
Ama87I	CYCGRG	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	495
AseI	ATTAAT	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	270, 286
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	55, 481
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BarI	GAAGNNNNNNTAC	2 cut(s)	195, 227
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	507
BccI	CCATC	1 cut(s)	367
BceAI	ACGGC	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	349, 452
BfoI	RGCGCY	2 cut(s)	271, 287
BisI	GCNGC	1 cut(s)	496
BlsI	GCNGC	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	343
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	123, 345
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	108, 434
BsaI	GGTCTC	1 cut(s)	349
BsaJI	CCNNGG	1 cut(s)	465
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	2 cut(s)	169, 394
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	349, 452
Bso31I	GGTCTC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	183, 478
Bsp19I	CCATGG	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	123, 345
BspTNI	GGTCTC	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	2 cut(s)	183, 478
BssT1I	CCWWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	73
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	169, 394
BstH2I	RGCGCY	2 cut(s)	271, 287
BstHHI	GCGC	2 cut(s)	270, 286
BstKTI	GATC	2 cut(s)	186, 481
BstMAI	GTCTC	2 cut(s)	349, 452
BstMBI	GATC	2 cut(s)	183, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 292
BstNSI	RCATGY	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	507
BstV2I	GAAGAC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	169, 394
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	2 cut(s)	270, 286
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	2 cut(s)	444, 466
CviJI	RGCY	4 cut(s)	52, 122, 229, 498
CviKI_1	RGCY	4 cut(s)	52, 122, 229, 498
DpnI	GATC	2 cut(s)	185, 480
DpnII	GATC	2 cut(s)	183, 478
Eco130I	CCWWGG	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	343
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	2 cut(s)	447, 469
FaiI	YATR	8 cut(s)	117, 150, 212, 253, 255, 300, 445, 467
FatI	CATG	2 cut(s)	443, 465
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	496
FokI	GGATG	2 cut(s)	176, 401
Fsp4HI	GCNGC	1 cut(s)	496
GlaI	GCGC	2 cut(s)	269, 285
GluI	GCNGC	1 cut(s)	496
GsuI	CTGGAG	2 cut(s)	108, 434
HaeII	RGCGCY	2 cut(s)	271, 287
HhaI	GCGC	2 cut(s)	270, 286
Hin1II	CATG	2 cut(s)	447, 469
Hin6I	GCGC	2 cut(s)	268, 284
HinP1I	GCGC	2 cut(s)	268, 284
HinfI	GANTC	3 cut(s)	454, 461, 487
HphI	GGTGA	2 cut(s)	55, 481
Hpy166II	GTNNAC	2 cut(s)	34, 133
Hpy188I	TCNGA	1 cut(s)	483
Hpy188III	TCNNGA	5 cut(s)	101, 125, 352, 451, 458
Hpy8I	GTNNAC	2 cut(s)	34, 133
HpyAV	CCTTC	3 cut(s)	197, 307, 421
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	5 cut(s)	65, 190, 210, 260, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 292
Hsp92II	CATG	2 cut(s)	447, 469
HspAI	GCGC	2 cut(s)	268, 284
Kzo9I	GATC	2 cut(s)	183, 478
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	7 cut(s)	102, 138, 243, 409, 416, 464, 523
Lsp1109I	GCAGC	1 cut(s)	507
LweI	GCATC	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	91, 430
MalI	GATC	2 cut(s)	185, 480
MboI	GATC	2 cut(s)	183, 478
MboII	GAAGA	4 cut(s)	92, 155, 484, 498
MluCI	AATT	2 cut(s)	27, 375
MlyI	GAGTC	2 cut(s)	470, 496
MmeI	TCCRAC	2 cut(s)	314, 366
MnlI	CCTC	4 cut(s)	121, 319, 334, 375
MseI	TTAA	5 cut(s)	26, 75, 320, 378, 396
MslI	CAYNNNNRTG	1 cut(s)	442
MwoI	GCNNNNNNNGC	2 cut(s)	257, 292
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	183, 478
NlaIII	CATG	2 cut(s)	447, 469
NlaIV	GGNNCC	2 cut(s)	123, 345
NmuCI	GTSAC	2 cut(s)	91, 430
NspI	RCATGY	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	458
PciI	ACATGT	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	497
PleI	GAGTC	2 cut(s)	469, 495
PpsI	GAGTC	2 cut(s)	469, 495
PpuMI	RGGWCCY	1 cut(s)	343
PscI	ACATGT	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	123, 345
PspPI	GGNCC	1 cut(s)	343
PspPPI	RGGWCCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	442
SaqAI	TTAA	5 cut(s)	26, 75, 320, 378, 396
SatI	GCNGC	1 cut(s)	496
Sau3AI	GATC	2 cut(s)	183, 478
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	2 cut(s)	470, 496
SetI	ASST	6 cut(s)	54, 91, 132, 208, 386, 432
SfaNI	GCATC	1 cut(s)	410
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	343
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	27, 375
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	324, 459
TasI	AATT	2 cut(s)	27, 375
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	5 cut(s)	26, 75, 320, 378, 396
Tru9I	TTAA	5 cut(s)	26, 75, 320, 378, 396
TseFI	GTSAC	2 cut(s)	91, 430
TseI	GCWGC	1 cut(s)	495
Tsp45I	GTSAC	2 cut(s)	91, 430
TspDTI	ATGAA	2 cut(s)	156, 492
TspGWI	ACGGA	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.