AT3G59690

IQ-domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006182
Physical Location & Seq
Forward (+)
22048557 .. 22051673
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59690.2

Sequence Viewer

Length: 1554 bp
ATGGGGAAGAAAGGAAGTTGGTTTTCTGCAATCAAAAGGGTGTTCACACCACATTCCAAAGAGAAGCAGCTAAGCAACAACAACCAAGAACCAGAGATAAAGAGTGAAAACAAAGAAAAGAAGAAGAAAGGTTTTGGAAAGAAACTAAGGAATGGAGAAACCAATTCATTTCTTCCCATTTTTAGACAGCCTAGTAGTATCGAAAAGATCTTGTCTGAAGCCGAACGAGAGCATAACCTTGTCTTTAGGCCACCAACTCCCACTGATCGAGCAAATTCATCATCAACCTCTGTTGCATCTCCTCTTGTTAGGCCTGCTTCTCCTAAAGTGCCTTCTCAAAGATATGTCTCTTCTCCAAAACCCATTTCCCCAAGAGTTGCTTACCCTCAAGTCCATTATCCGAAGCCCCCTTCTCCAAAGCCGCCTTCTCCAAGAGCGGTTTCGCCTAGGATTGTGCAGCGACGTGAGTTTGTGCATAGACCAGAGCCAAGTCTATTGGTCAAAAATGCTTATGCAATTAAGATTCAAGCAGCTTTTAGAGGTTACATGGCAAGGAGGAGTTTCAGAGCTTTGAAAGGTCTAGTCAGGCTTCAAGGAGTGGTAAGAGGACACAGCGTGAAGCGTCAAACGATGAATGCTATGAAGTATATGCAGCTTTTAGTCCGAGTCCAAACACAAGTCCAGTCACGTCGCATCCAAATGCTCGAAAACCGAGCTAGGAACGATAAAGATGACACGAAATTAGTCTCTAGTCGTATGTCTGACGATTGGGACGATAGCGTGCTGACAAAAGAAGAAAAAGATGTGAGGCTTCATAGGAAGATTGATGCAATGATCAAAAGAGAACGGTCCATGGCCTATGCTTATTCTCACCAGTTATGGAAAAACAGTCCAAAGTCTGCTCAGGACATTAGAACAAGTGGGTTCCCACTTTGGTGGAACTGGGTGGACCGGCAGAAGAATCAAAACCAACCGTTCAGGCTAACACCAACACGACCGAGCCTGAGCCCTCAGCCTCAATCTAGCAACCAAAACCATTTCAGGCTCAACAACAGTTTCGACACGTCAACACCCAATTCATCAAAATCCACATTCGTTACTCCATCTAGACCCATTCATACTCCGCAACCATACAGTAGCAGCGTCTCAAGATACTCACGAGGAGGAGGACGAGCTACACAAGATTCTCCTTTTAAAGATGATGATAGCCTCACAAGCTGTCCTCCATTCTCAGCTCCAAGCTACATGGCTCCAACAGTCTCAGCTAAAGCAAAACTAAGAGCAAACAGCAATCCAAAGGAGAGAATGGACCGTACACCGGTCAGCACAAACGAGAAGAGACGAAGTTCGTTCCCTCTTGGTTCGTTCAAATGGAACAAAGGGTCATTGTTCATGAGCAACAACAGTAACAACAAGGGTCCAGGTTCTTCTTCTTCTGGTGCTGTGGTGCTTGAGAAGCACAAAACCCTCAAATCCGTTGGAAATTTGAGTATTGATTCTACTGTTTCGATGCCTGCAACAATTGGGAGGAGGGCTTTTAACAGATTTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

517

Amino Acids

58.5

Weight (kDa)

10.88

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 382 - 492 3.6e-15 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 437
AciI CCGC 3 cut(s) 422, 437, 1124
AcsI RAATTY 2 cut(s) 274, 1483
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 1 cut(s) 1315
AfiI CCNNNNNNNGG 1 cut(s) 1318
AflIII ACRYGT 1 cut(s) 1062
AgeI ACCGGT 1 cut(s) 1318
AgsI TTSAA 4 cut(s) 527, 574, 593, 1369
AjiI CACGTC 3 cut(s) 464, 689, 1065
AjnI CCWGG 1 cut(s) 1420
AjuI GAANNNNNNNTTGG 6 cut(s) 349, 381, 409, 424, 441, 456
AleI CACNNNNGTG 1 cut(s) 934
Alw26I GTCTC 5 cut(s) 352, 751, 1150, 1264, 1333
AoxI GGCC 3 cut(s) 248, 311, 855
ApeKI GCWGC 5 cut(s) 67, 457, 530, 652, 1140
ApoI RAATTY 2 cut(s) 274, 1483
AsiGI ACCGGT 1 cut(s) 1318
AspA2I CCTAGG 1 cut(s) 446
AspS9I GGNCC 4 cut(s) 849, 949, 1309, 1418
AsuHPI GGTGA 1 cut(s) 863
AvaII GGWCC 4 cut(s) 849, 949, 1309, 1418
AvrII CCTAGG 1 cut(s) 446
BanII GRGCYC 1 cut(s) 1010
BauI CACGAG 1 cut(s) 1158
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 5 cut(s) 79, 469, 542, 664, 1152
BccI CCATC 1 cut(s) 1111
BciT130I CCWGG 1 cut(s) 1422
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 5 cut(s) 352, 751, 1150, 1264, 1333
BfaI CTAG 7 cut(s) 192, 447, 581, 717, 750, 1023, 1107
BglII AGATCT 1 cut(s) 207
BisI GCNGC 6 cut(s) 68, 422, 458, 531, 653, 1141
BlnI CCTAGG 1 cut(s) 446
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 6 cut(s) 69, 423, 459, 532, 654, 1142
Bme1390I CCNGG 1 cut(s) 1422
Bme18I GGWCC 4 cut(s) 849, 949, 1309, 1418
BmgBI CACGTC 3 cut(s) 464, 689, 1065
BmgT120I GGNCC 4 cut(s) 849, 949, 1309, 1418
BmiI GGNNCC 3 cut(s) 926, 1251, 1419
BmrFI CCNGG 1 cut(s) 1422
BmrI ACTGGG 1 cut(s) 952
BmsI GCATC 4 cut(s) 305, 702, 817, 1500
BmuI ACTGGG 1 cut(s) 952
Bpu10I CCTNAGC 3 cut(s) 903, 1004, 1011
Bpu1102I GCTNAGC 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 372, 1132, 1472
BsaJI CCNNGG 2 cut(s) 446, 852
BsaWI WCCGGW 1 cut(s) 1318
Bsc4I CCNNNNNNNGG 1 cut(s) 1318
Bse118I RCCGGY 2 cut(s) 951, 1318
Bse1I ACTGG 3 cut(s) 682, 874, 947
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 1 cut(s) 1422
BseDI CCNNGG 2 cut(s) 446, 852
BseGI GGATG 1 cut(s) 693
BseLI CCNNNNNNNGG 1 cut(s) 1318
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 5 cut(s) 917, 995, 1025, 1245, 1275
BseNI ACTGG 3 cut(s) 682, 874, 947
BseRI GAGGAG 5 cut(s) 291, 571, 1176, 1179, 1543
BseXI GCAGC 5 cut(s) 79, 469, 542, 664, 1152
BsgI GTGCAG 1 cut(s) 476
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 3 cut(s) 250, 313, 857
BshTI ACCGGT 1 cut(s) 1318
BsiEI CGRYCG 1 cut(s) 998
BsiSI CCGG 2 cut(s) 952, 1319
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 1 cut(s) 1318
BsmAI GTCTC 5 cut(s) 352, 751, 1150, 1264, 1333
BsmBI CGTCTC 2 cut(s) 1150, 1333
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 3 cut(s) 250, 313, 857
Bsp1286I GDGCHC 1 cut(s) 1010
Bsp143I GATC 3 cut(s) 207, 265, 834
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 3 cut(s) 422, 437, 1124
BspANI GGCC 3 cut(s) 250, 313, 857
BspCNI CTCAG 5 cut(s) 916, 996, 1024, 1244, 1274
BspHI TCATGA 1 cut(s) 1392
BspLI GGNNCC 3 cut(s) 926, 1251, 1419
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 837
BsrFI RCCGGY 2 cut(s) 951, 1318
BsrI ACTGG 3 cut(s) 682, 874, 947
BssAI RCCGGY 2 cut(s) 951, 1318
BssECI CCNNGG 2 cut(s) 446, 852
BssMI GATC 3 cut(s) 207, 265, 834
BssSI CACGAG 1 cut(s) 1158
BssT1I CCWWGG 2 cut(s) 446, 852
Bst2BI CACGAG 1 cut(s) 1158
Bst2UI CCWGG 1 cut(s) 1422
Bst4CI ACNGT 9 cut(s) 849, 890, 975, 1055, 1136, 1258, 1313, 1406, 1504
Bst6I CTCTTC 2 cut(s) 355, 1331
BstC8I GCNNGC 3 cut(s) 315, 782, 1515
BstDEI CTNAG 8 cut(s) 71, 146, 903, 1004, 1011, 1231, 1261, 1277
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 1 cut(s) 693
BstKTI GATC 3 cut(s) 210, 268, 837
BstMAI GTCTC 5 cut(s) 352, 751, 1150, 1264, 1333
BstMBI GATC 3 cut(s) 207, 265, 834
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 2 cut(s) 1215, 1456
BstNI CCWGG 1 cut(s) 1422
BstSCI CCNGG 1 cut(s) 1420
BstV1I GCAGC 5 cut(s) 79, 469, 542, 664, 1152
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 3 cut(s) 250, 313, 857
BtgI CCRYGG 1 cut(s) 852
BtrI CACGTC 3 cut(s) 464, 689, 1065
BtsCI GGATG 1 cut(s) 693
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 3 cut(s) 315, 782, 1515
CciI TCATGA 1 cut(s) 1392
Cfr10I RCCGGY 2 cut(s) 951, 1318
Cfr13I GGNCC 4 cut(s) 849, 949, 1309, 1418
CseI GACGC 2 cut(s) 611, 1132
Csp6I GTAC 1 cut(s) 1314
CspAI ACCGGT 1 cut(s) 1318
CviAII CATG 4 cut(s) 547, 853, 1246, 1393
CviQI GTAC 1 cut(s) 1314
DdeI CTNAG 8 cut(s) 71, 146, 903, 1004, 1011, 1231, 1261, 1277
DpnI GATC 3 cut(s) 209, 267, 836
DpnII GATC 3 cut(s) 207, 265, 834
DraI TTTAAA 1 cut(s) 1195
DraIII CACNNNGTG 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 355, 1331
EarI CTCTTC 2 cut(s) 355, 1331
Eco130I CCWWGG 2 cut(s) 446, 852
Eco147I AGGCCT 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 1010
Eco47I GGWCC 4 cut(s) 849, 949, 1309, 1418
Eco57I CTGAAG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 1420
EcoT14I CCWWGG 2 cut(s) 446, 852
EcoT38I GRGCYC 1 cut(s) 1010
ErhI CCWWGG 2 cut(s) 446, 852
Esp3I CGTCTC 2 cut(s) 1150, 1333
FaeI CATG 4 cut(s) 550, 856, 1249, 1396
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 785
FatI CATG 4 cut(s) 546, 852, 1245, 1392
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 6 cut(s) 68, 422, 458, 531, 653, 1141
FokI GGATG 1 cut(s) 680
FriOI GRGCYC 1 cut(s) 1010
Fsp4HI GCNGC 6 cut(s) 68, 422, 458, 531, 653, 1141
FspBI CTAG 7 cut(s) 192, 447, 581, 717, 750, 1023, 1107
GluI GCNGC 6 cut(s) 68, 422, 458, 531, 653, 1141
HaeIII GGCC 3 cut(s) 250, 313, 857
HapII CCGG 2 cut(s) 952, 1319
HgaI GACGC 2 cut(s) 611, 1132
Hin1II CATG 4 cut(s) 550, 856, 1249, 1396
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HinfI GANTC 5 cut(s) 523, 666, 961, 1184, 1496
HpaII CCGG 2 cut(s) 952, 1319
HphI GGTGA 1 cut(s) 863
Hpy166II GTNNAC 4 cut(s) 45, 949, 1068, 1316
Hpy188I TCNGA 5 cut(s) 217, 402, 566, 665, 763
Hpy188III TCNNGA 5 cut(s) 905, 1107, 1149, 1158, 1393
Hpy8I GTNNAC 4 cut(s) 45, 949, 1068, 1316
Hpy99I CGWCG 2 cut(s) 465, 693
HpyAV CCTTC 3 cut(s) 342, 420, 435
HpyCH4III ACNGT 9 cut(s) 849, 890, 975, 1055, 1136, 1258, 1313, 1406, 1504
HpyCH4IV ACGT 3 cut(s) 463, 688, 1064
HpyCH4V TGCA 8 cut(s) 29, 296, 457, 475, 515, 652, 830, 1517
HpyF10VI GCNNNNNNNGC 2 cut(s) 1215, 1456
HpyF3I CTNAG 8 cut(s) 71, 146, 903, 1004, 1011, 1231, 1261, 1277
HpySE526I ACGT 3 cut(s) 463, 688, 1064
Hsp92II CATG 4 cut(s) 550, 856, 1249, 1396
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 3 cut(s) 207, 265, 834
LmnI GCTCC 2 cut(s) 1240, 1255
Lsp1109I GCAGC 5 cut(s) 79, 469, 542, 664, 1152
LweI GCATC 4 cut(s) 305, 702, 817, 1500
MaeI CTAG 7 cut(s) 192, 447, 581, 717, 750, 1023, 1107
MaeII ACGT 3 cut(s) 463, 688, 1064
MaeIII GTNAC 4 cut(s) 542, 684, 1096, 1406
MalI GATC 3 cut(s) 209, 267, 836
MbiI CCGCTC 1 cut(s) 437
MboI GATC 3 cut(s) 207, 265, 834
MfeI CAATTG 1 cut(s) 1521
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 1010
MluCI AATT 7 cut(s) 163, 274, 516, 740, 1075, 1483, 1521
MlyI GAGTC 1 cut(s) 675
MmeI TCCRAC 2 cut(s) 1277, 1459
MseI TTAA 3 cut(s) 519, 1194, 1539
MslI CAYNNNNRTG 2 cut(s) 698, 934
MspI CCGG 2 cut(s) 952, 1319
MspR9I CCNGG 1 cut(s) 1422
MunI CAATTG 1 cut(s) 1521
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 1 cut(s) 1422
MwoI GCNNNNNNNGC 2 cut(s) 1215, 1456
NcoI CCATGG 1 cut(s) 852
NdeII GATC 3 cut(s) 207, 265, 834
NlaIII CATG 4 cut(s) 550, 856, 1249, 1396
NlaIV GGNNCC 3 cut(s) 926, 1251, 1419
NmuCI GTSAC 1 cut(s) 684
OliI CACNNNNGTG 1 cut(s) 934
PagI TCATGA 1 cut(s) 1392
PceI AGGCCT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 771
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 4 cut(s) 523, 961, 1184, 1496
PinAI ACCGGT 1 cut(s) 1318
PkrI GCNGC 6 cut(s) 69, 423, 459, 532, 654, 1142
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 1420
PspGI CCWGG 1 cut(s) 1420
PspN4I GGNNCC 3 cut(s) 926, 1251, 1419
PspPI GGNCC 4 cut(s) 849, 949, 1309, 1418
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 1315
RsaNI GTAC 1 cut(s) 1314
RseI CAYNNNNRTG 2 cut(s) 698, 934
SaqAI TTAA 3 cut(s) 519, 1194, 1539
SatI GCNGC 6 cut(s) 68, 422, 458, 531, 653, 1141
Sau3AI GATC 3 cut(s) 207, 265, 834
Sau96I GGNCC 4 cut(s) 849, 949, 1309, 1418
SchI GAGTC 1 cut(s) 675
ScrFI CCNGG 1 cut(s) 1422
SduI GDGCHC 1 cut(s) 1010
SfaNI GCATC 4 cut(s) 305, 702, 817, 1500
SinI GGWCC 4 cut(s) 849, 949, 1309, 1418
SmiMI CAYNNNNRTG 2 cut(s) 698, 934
SmlI CTYRAG 3 cut(s) 387, 1147, 1451
SmoI CTYRAG 3 cut(s) 387, 1147, 1451
Sse9I AATT 7 cut(s) 163, 274, 516, 740, 1075, 1483, 1521
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 3 cut(s) 422, 437, 1124
SspMI CTAG 7 cut(s) 192, 447, 581, 717, 750, 1023, 1107
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 1 cut(s) 1420
StyI CCWWGG 2 cut(s) 446, 852
TaaI ACNGT 9 cut(s) 849, 890, 975, 1055, 1136, 1258, 1313, 1406, 1504
TaiI ACGT 3 cut(s) 466, 691, 1067
TaqI TCGA 5 cut(s) 201, 268, 705, 1059, 1508
TaqII GACCGA 1 cut(s) 1012
TasI AATT 7 cut(s) 163, 274, 516, 740, 1075, 1483, 1521
TauI GCSGC 1 cut(s) 424
TfiI GAWTC 4 cut(s) 523, 961, 1184, 1496
Tru1I TTAA 3 cut(s) 519, 1194, 1539
Tru9I TTAA 3 cut(s) 519, 1194, 1539
TscAI CASTG 1 cut(s) 268
TseFI GTSAC 1 cut(s) 684
TseI GCWGC 5 cut(s) 67, 457, 530, 652, 1140
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 8 cut(s) 156, 267, 647, 656, 803, 1068, 1106, 1381
TspGWI ACGGA 1 cut(s) 1465
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 4 cut(s) 849, 949, 1309, 1418
XapI RAATTY 2 cut(s) 274, 1483
XbaI TCTAGA 1 cut(s) 1106
XmaJI CCTAGG 1 cut(s) 446
XspI CTAG 7 cut(s) 192, 447, 581, 717, 750, 1023, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.