Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006182

Physical Location & Seq

Genomic Coordinates Forward (+)

9874079 .. 9876180

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0063500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGCTCAATGCTGACCAGCACCACCTGTGGCTCTGAACCCATCACCATGAAAACGTCGCCGCCGCCCTCCTCCTCCTCAGCTCCAGACCCTTCTTCTCTCCTCGGTTTCGGCTACTCCAAGATCTCCCTCCCTCTCCACCACCCTCACCCCCTTCTCCGCCGCTGCATTTCCGACCCCTACACTCCTCCGGCGCCGCCGCAAACCAACCCATTTCTCTCCGCCGGTCACTCTCCCGATGATCGCAACCCACCCAAGACTTCCTCCCCGTTCCCGACCCACTTCAACTCCTCCCTCCCGCCTCTCCCTCCGCCGCAGGCGCCGACCCTCCGCCGCTCCGTCTCCGATCTCAACCCCTCTCCGGCCAAGACCTTCTCCCGCTCCTCCAGCTCCAACGAGATGTCCGTCGAGACTGACTCCGACACCCCCAATTCCAAGAGGCTGAAGAGGATGAAGGGTCGCCTGAAAGAGATGAGTGAGTGGTGCAGGCAGCTCATGCGTGAAGAAGATTTGGAACAGGATGAAGAACTTGAAATTGGAGCCGGTCAAGATATTCCTGACATTGATGCCACTCAAGATATTCCCAATGATACTTCTACTGAGGATAGCAGTGAGAAAGAATTTTCAGAATCTGTGAGTGTGGAGAAGAAGGATGACTCTCTGGTCATTCACTTCAGGTGCCACTGTGACAAAGCCTATCAGTTCCTTCTCAATGGAGGTGACTGCTACTACAAGCTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

247

Amino Acids

27.31

Weight (kDa)

5.17

Isoelectric Point (pI)

74.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59690 AT3G59690
fragaria_vesca	FvH4_4g10360 FvH4_4g10360 FvH4_4g10360 FvH4_4g10360 FvH4_4g10360 FvH4_4g10360
malus_domestica	MD04G1049400.v1.1 MD13G1257200.v1.1
prunus_persica	Prupe.1G207600_v2.0.a1 Prupe.1G207600_v2.0.a1
pyrus_communis	pycom04g04360 pycom13g26240
rosa_chinensis	RchiOBHm_Chr4g0405911
rosa_laevigata	RLG00000008817
rosa_multiflora	Rmu_sc0001200.1_g000002
rosa_roxburghii	Rroxscaffold_5G00350570
rosa_rugosa	Rorug04G0063300 Rorug04G0063400.1 Rorug04G0063500 Rorug04G0063600
rosa_samantha	Rh4AG134200 Rh4BG129500 Rh4CG142100 Rh4DG128700
rosa_wichuraiana	Rw4G010940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	662
AccB1I	GGYRCC	3 cut(s)	193, 319, 678
AccBSI	CCGCTC	2 cut(s)	336, 381
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	464, 658
AcyI	GRCGYC	2 cut(s)	194, 320
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	286, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	5 cut(s)	6, 83, 390, 493, 736
AluI	AGCT	5 cut(s)	6, 83, 390, 493, 736
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	346, 404
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	2 cut(s)	165, 490
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	196, 322
AsuHPI	GGTGA	3 cut(s)	37, 140, 731
BanI	GGYRCC	3 cut(s)	193, 319, 678
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	152, 502
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	346, 404
BfoI	RGCGCY	2 cut(s)	197, 323
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	9 cut(s)	62, 65, 163, 166, 197, 200, 314, 334, 491
BlsI	GCNGC	9 cut(s)	63, 66, 164, 167, 198, 201, 315, 335, 492
BmiI	GGNNCC	4 cut(s)	195, 321, 541, 680
BmsI	GCATC	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	2 cut(s)	69, 370
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	558
BsaHI	GRCGYC	2 cut(s)	194, 320
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	2 cut(s)	224, 542
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	456, 526, 658
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	93, 591
BseRI	GAGGAG	7 cut(s)	61, 64, 67, 92, 177, 280, 373
BseXI	GCAGC	2 cut(s)	152, 502
BsgI	GTGCAG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	365
BshNI	GGYRCC	3 cut(s)	193, 319, 678
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	191, 225, 362, 543
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	346, 404
BsmBI	CGTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	123, 241, 346
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	2 cut(s)	92, 592
BspLI	GGNNCC	4 cut(s)	195, 321, 541, 680
BspT107I	GGYRCC	3 cut(s)	193, 319, 678
BsrBI	CCGCTC	2 cut(s)	336, 381
BsrFI	RCCGGY	2 cut(s)	224, 542
BssAI	RCCGGY	2 cut(s)	224, 542
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	3 cut(s)	123, 241, 346
BssNI	GRCGYC	2 cut(s)	194, 320
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	1 cut(s)	440
BstACI	GRCGYC	2 cut(s)	194, 320
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	2 cut(s)	318, 488
BstDEI	CTNAG	2 cut(s)	79, 600
BstF5I	GGATG	3 cut(s)	456, 526, 658
BstH2I	RGCGCY	2 cut(s)	197, 323
BstHHI	GCGC	2 cut(s)	196, 322
BstKTI	GATC	3 cut(s)	126, 244, 349
BstMAI	GTCTC	2 cut(s)	346, 404
BstMBI	GATC	3 cut(s)	123, 241, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	319, 387, 496
BstV1I	GCAGC	2 cut(s)	152, 502
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	456, 526, 658
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	616, 682
Cac8I	GCNNGC	2 cut(s)	318, 488
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	2 cut(s)	196, 322
Cfr10I	RCCGGY	2 cut(s)	224, 542
CviAII	CATG	3 cut(s)	49, 496, 739
DdeI	CTNAG	2 cut(s)	79, 600
DinI	GGCGCC	2 cut(s)	195, 321
DpnI	GATC	3 cut(s)	125, 243, 348
DpnII	GATC	3 cut(s)	123, 241, 346
DrdI	GACNNNNNNGTC	1 cut(s)	662
DseDI	GACNNNNNNGTC	1 cut(s)	662
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
EciI	GGCGGA	4 cut(s)	149, 211, 300, 320
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	464, 658
EcoICRI	GAGCTC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	8
EgeI	GGCGCC	2 cut(s)	195, 321
EheI	GGCGCC	2 cut(s)	195, 321
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	3 cut(s)	52, 499, 742
FaiI	YATR	3 cut(s)	50, 497, 740
FatI	CATG	3 cut(s)	48, 495, 738
FauI	CCCGC	2 cut(s)	306, 386
Fnu4HI	GCNGC	9 cut(s)	62, 65, 163, 166, 197, 200, 314, 334, 491
FokI	GGATG	3 cut(s)	463, 533, 665
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	9 cut(s)	62, 65, 163, 166, 197, 200, 314, 334, 491
GlaI	GCGC	2 cut(s)	195, 321
GluI	GCNGC	9 cut(s)	62, 65, 163, 166, 197, 200, 314, 334, 491
GsuI	CTGGAG	2 cut(s)	69, 370
HaeII	RGCGCY	2 cut(s)	197, 323
HaeIII	GGCC	1 cut(s)	365
HapII	CCGG	4 cut(s)	191, 225, 362, 543
HhaI	GCGC	2 cut(s)	196, 322
Hin1I	GRCGYC	2 cut(s)	194, 320
Hin1II	CATG	3 cut(s)	52, 499, 742
Hin6I	GCGC	2 cut(s)	194, 320
HinP1I	GCGC	2 cut(s)	194, 320
HinfI	GANTC	3 cut(s)	416, 629, 656
HpaII	CCGG	4 cut(s)	191, 225, 362, 543
HphI	GGTGA	3 cut(s)	37, 140, 731
Hpy188I	TCNGA	5 cut(s)	37, 175, 346, 421, 628
Hpy188III	TCNNGA	7 cut(s)	86, 236, 274, 409, 548, 557, 575
Hpy99I	CGWCG	2 cut(s)	61, 410
HpyAV	CCTTC	6 cut(s)	102, 164, 382, 448, 643, 716
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	168, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	319, 387, 496
HpyF3I	CTNAG	2 cut(s)	79, 600
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	194, 320
Hsp92II	CATG	3 cut(s)	52, 499, 742
HspAI	GCGC	2 cut(s)	194, 320
KasI	GGCGCC	2 cut(s)	193, 319
Kzo9I	GATC	3 cut(s)	123, 241, 346
LmnI	GCTCC	5 cut(s)	88, 341, 386, 395, 539
Lsp1109I	GCAGC	2 cut(s)	152, 502
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	227, 686, 719
MalI	GATC	3 cut(s)	125, 243, 348
MbiI	CCGCTC	2 cut(s)	336, 381
MboI	GATC	3 cut(s)	123, 241, 346
MboII	GAAGA	6 cut(s)	87, 457, 515, 518, 536, 658
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	430, 534, 620
Mly113I	GGCGCC	2 cut(s)	194, 320
MlyI	GAGTC	2 cut(s)	410, 650
MmeI	TCCRAC	3 cut(s)	198, 417, 444
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	4 cut(s)	191, 225, 362, 543
MwoI	GCNNNNNNNGC	3 cut(s)	319, 387, 496
NarI	GGCGCC	2 cut(s)	194, 320
NdeII	GATC	3 cut(s)	123, 241, 346
NlaIII	CATG	3 cut(s)	52, 499, 742
NlaIV	GGNNCC	4 cut(s)	195, 321, 541, 680
NmuCI	GTSAC	3 cut(s)	227, 686, 719
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	9 cut(s)	63, 66, 164, 167, 198, 201, 315, 335, 492
PleI	GAGTC	2 cut(s)	410, 650
PluTI	GGCGCC	2 cut(s)	197, 323
PpsI	GAGTC	2 cut(s)	410, 650
Psp124BI	GAGCTC	1 cut(s)	8
PspN4I	GGNNCC	4 cut(s)	195, 321, 541, 680
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	8
SatI	GCNGC	9 cut(s)	62, 65, 163, 166, 197, 200, 314, 334, 491
Sau3AI	GATC	3 cut(s)	123, 241, 346
SchI	GAGTC	2 cut(s)	410, 650
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	556
SfoI	GGCGCC	2 cut(s)	195, 321
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	3 cut(s)	430, 534, 620
SspDI	GGCGCC	2 cut(s)	193, 319
SstI	GAGCTC	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	430, 534, 620
TauI	GCSGC	7 cut(s)	64, 67, 165, 199, 202, 316, 336
TfiI	GAWTC	1 cut(s)	629
TscAI	CASTG	2 cut(s)	616, 689
TseFI	GTSAC	3 cut(s)	227, 686, 719
TseI	GCWGC	2 cut(s)	165, 490
Tsp45I	GTSAC	3 cut(s)	227, 686, 719
TspDTI	ATGAA	3 cut(s)	65, 467, 537
TspGWI	ACGGA	2 cut(s)	328, 394
TspRI	CASTG	2 cut(s)	616, 689
XapI	RAATTY	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.