Rorug04G0063600

IQ-DOMAIN 14-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006182
Physical Location & Seq
Forward (+)
9891945 .. 9892526
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0063600.1

Sequence Viewer

Length: 582 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACATCTATTTTTGGTTCGTGAACCAAAGGGCTGGGGAGAAGCAGAATAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAGTTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTTAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGAAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

193

Amino Acids

21.51

Weight (kDa)

6.16

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 2.7e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 394
Acc36I ACCTGC 3 cut(s) 78, 160, 394
AciI CCGC 2 cut(s) 82, 402
AclWI GGATC 4 cut(s) 188, 363, 382, 463
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 2 cut(s) 220, 492
AhlI ACTAGT 1 cut(s) 512
AluBI AGCT 3 cut(s) 130, 193, 500
AluI AGCT 3 cut(s) 130, 193, 500
AlwI GGATC 4 cut(s) 188, 363, 382, 463
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 335
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 427
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 480, 513
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 394
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 6, 155
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 2 cut(s) 173, 522
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 579
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 2 cut(s) 15, 254
BsgI GTGCAG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
BspACI CCGC 2 cut(s) 82, 402
BspLI GGNNCC 2 cut(s) 6, 155
BspMI ACCTGC 3 cut(s) 78, 160, 394
BspPI GGATC 4 cut(s) 188, 363, 382, 463
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
Bst4CI ACNGT 1 cut(s) 163
Bst6I CTCTTC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 496
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 7 cut(s) 109, 183, 213, 311, 358, 377, 458
BstMBI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
BstMWI GCNNNNNNNGC 2 cut(s) 79, 401
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 180, 374, 455
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 3 cut(s) 180, 374, 455
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 3 cut(s) 78, 160, 394
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 301, 350, 466, 532, 553
CviJI RGCY 6 cut(s) 53, 130, 193, 254, 316, 500
CviKI_1 RGCY 6 cut(s) 53, 130, 193, 254, 316, 500
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 496
DpnI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 457
DpnII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 153
FaeI CATG 7 cut(s) 73, 296, 304, 353, 469, 535, 556
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 349, 465, 531, 552
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 44, 299
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 480, 513
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 2 cut(s) 19, 258
GsuI CTGGAG 2 cut(s) 173, 522
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 296, 304, 353, 469, 535, 556
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 244, 279, 424
Hpy188I TCNGA 2 cut(s) 111, 286
Hpy188III TCNNGA 2 cut(s) 220, 241
Hpy8I GTNNAC 3 cut(s) 244, 279, 424
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 304, 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 401
HpyF3I CTNAG 1 cut(s) 496
Hsp92II CATG 7 cut(s) 73, 296, 304, 353, 469, 535, 556
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
LmnI GCTCC 2 cut(s) 84, 127
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 2 cut(s) 480, 513
MaeIII GTNAC 1 cut(s) 334
MalI GATC 7 cut(s) 108, 182, 212, 310, 357, 376, 457
MboI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
MboII GAAGA 4 cut(s) 369, 390, 484, 581
MflI RGATCY 3 cut(s) 180, 374, 455
MhlI GDGCHC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 7 cut(s) 22, 29, 131, 171, 346, 497, 557
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 2 cut(s) 366, 423
MspA1I CMGCKG 2 cut(s) 193, 404
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 401
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
NlaIII CATG 7 cut(s) 73, 296, 304, 353, 469, 535, 556
NlaIV GGNNCC 2 cut(s) 6, 155
NspI RCATGY 1 cut(s) 73
PaqCI CACCTGC 2 cut(s) 78, 394
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 2 cut(s) 15, 254
PspN4I GGNNCC 2 cut(s) 6, 155
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 502, 534
PsuI RGATCY 3 cut(s) 180, 374, 455
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 366, 423
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 7 cut(s) 106, 180, 210, 308, 355, 374, 455
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 300
SetI ASST 7 cut(s) 92, 132, 155, 174, 195, 388, 502
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 512
SsiI CCGC 2 cut(s) 82, 402
SspMI CTAG 2 cut(s) 480, 513
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 1 cut(s) 213
TfiI GAWTC 2 cut(s) 94, 117
Tru1I TTAA 2 cut(s) 366, 423
Tru9I TTAA 2 cut(s) 366, 423
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 4 cut(s) 281, 476, 541, 548
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 2 cut(s) 480, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.