AT3G63088

glutathione peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020832
Physical Location & Seq
Forward (+)
23313004 .. 23313388
385 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63088.1

Sequence Viewer

Length: 147 bp
ATGGCAGGGACAGTAGTATTGAGATGCTGCACTAGTGTAACCAAGGTTAGGACATGGAAAAGATGTTCGAAGCAGATAAAGGAGCAAAGGGCTCGTCTTTACATCATCTGGAAATGTGCTGTCTTTCTTCTCTCCTCCCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00480 ko00590 ko04918 map00480 map00590 map04918
Pfam Domains
Protein Families
GSHPx

Protein Analysis

48

Amino Acids

5.61

Weight (kDa)

10.07

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 27 - 45 4.7e-11 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63088
fragaria_vesca FvH4_2g23871
prunus_persica Prupe.1G150500_v2.0.a1 Prupe.8G244200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291491

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 48
AhlI ACTAGT 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
ApeKI GCWGC 1 cut(s) 27
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AsuII TTCGAA 1 cut(s) 68
BanII GRGCYC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmsI GCATC 1 cut(s) 14
Bpu14I TTCGAA 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 42
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 14
BsgI GTGCAG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 14
CviAII CATG 2 cut(s) 54, 140
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 57, 143
FaiI YATR 2 cut(s) 55, 141
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 53, 139
Fnu4HI GCNGC 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 33
FspEI CC 8 cut(s) 29, 34, 40, 55, 65, 73, 74, 94
GluI GCNGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 57, 143
Hpy188III TCNNGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 30
Hsp92II CATG 2 cut(s) 57, 143
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 1 cut(s) 94
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 94
MnlI CCTC 1 cut(s) 145
NlaIII CATG 2 cut(s) 57, 143
NspV TTCGAA 1 cut(s) 68
PkrI GCNGC 1 cut(s) 29
SatI GCNGC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 94
SetI ASST 1 cut(s) 48
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 68
SgeI CNNG 6 cut(s) 18, 45, 55, 66, 105, 121
SpeI ACTAGT 1 cut(s) 32
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 68
TseI GCWGC 1 cut(s) 27
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.