FvH4_2g23871

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0020832
Physical Location & Seq
Reverse (-)
19504145 .. 19504682
538 bp
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UTR
Exon/CDS
Intron
FvH4_2g23871.t1

Sequence Viewer

Length: 309 bp
ATGACCCCTCCAAAGGGCCAACCAGAGGCCAACATATGTCAACCACCACCACACATAATGTTCTCTCCTCTCTCACCTCACACTTCTCCTTCTCCACTCTCCCTCAATATCTCAAATAATCCAGTTGGTATTGTATTTGATTCTATGGCTACTGCCGGCAACGAAATCCCGACGAGGAGGAGCAGAAGTAGTAGAAGAAGCACTAGTACTTTGAAGGTTGGCTCATTGGGAAGGTGTTTGAAAGAGCAGAGGGGAAGGCTTTACATCATGTGGAGATGCACTGTCATGCTTCTGTGTTGGGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

103

Amino Acids

11.32

Weight (kDa)

9.78

Isoelectric Point (pI)

89.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 81 - 99 1.8e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63088
fragaria_vesca FvH4_2g23871
prunus_persica Prupe.1G150500_v2.0.a1 Prupe.8G244200_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291491

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 3 cut(s) 13, 14, 25
AgsI TTSAA 2 cut(s) 214, 241
AhlI ACTAGT 1 cut(s) 203
AoxI GGCC 2 cut(s) 16, 27
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BcuI ACTAGT 1 cut(s) 203
BfaI CTAG 1 cut(s) 204
BmcAI AGTACT 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 14, 25
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 13, 14, 25
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 3 cut(s) 57, 190, 193
BshFI GGCC 2 cut(s) 18, 29
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 3 cut(s) 13, 14, 25
BsnI GGCC 2 cut(s) 18, 29
BspANI GGCC 2 cut(s) 18, 29
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 157
BstF5I GGATG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 18, 29
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 268, 286
CviJI RGCY 5 cut(s) 18, 29, 149, 222, 259
CviKI_1 RGCY 5 cut(s) 18, 29, 149, 222, 259
CviQI GTAC 1 cut(s) 207
FaeI CATG 2 cut(s) 271, 289
FaiI YATR 6 cut(s) 35, 37, 56, 146, 269, 287
FatI CATG 2 cut(s) 267, 285
FauNDI CATATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 204
HaeIII GGCC 2 cut(s) 18, 29
HapII CCGG 1 cut(s) 156
Hin1II CATG 2 cut(s) 271, 289
HincII GTYRAC 1 cut(s) 41
HindII GTYRAC 1 cut(s) 41
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 41
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 4 cut(s) 99, 208, 225, 249
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 279
Hsp92II CATG 2 cut(s) 271, 289
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 36, 135, 169
LweI GCATC 1 cut(s) 266
MaeI CTAG 1 cut(s) 204
MboII GAAGA 1 cut(s) 207
MnlI CCTC 8 cut(s) 18, 19, 78, 87, 113, 168, 171, 243
MroNI GCCGGC 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 1 cut(s) 156
NaeI GCCGGC 1 cut(s) 157
NdeI CATATG 1 cut(s) 35
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 2 cut(s) 271, 289
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 284
Sau96I GGNCC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 208
SetI ASST 3 cut(s) 79, 219, 236
SfaNI GCATC 1 cut(s) 266
SgeI CNNG 8 cut(s) 35, 134, 168, 181, 186, 216, 280, 298
SmiMI CAYNNNNRTG 1 cut(s) 284
SpeI ACTAGT 1 cut(s) 203
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 283
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 286
TspRI CASTG 1 cut(s) 286
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.